Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold133G34587 Striga asiatica HOM05D000343 ORTHO05D405600 1.8e-48 195.7 102 100.0
SGA_v2.0_scaffold253G45132 Striga asiatica HOM05D000343 ORTHO05D000975 1.1e-08 63.5 34 97.1
Migut.A00779 Erythranthe guttata HOM05D000343 ORTHO05D000975 8.9e-08 60.5 34 91.2
Potri.001G105800 Populus trichocarpa HOM05D000343 ORTHO05D000975 1.5e-07 59.7 34 82.4
Dinv37654 Davidia involucrata HOM05D000343 ORTHO05D000975 2.0e-07 59.3 34 85.3
MSTRG.25596 Avicennia marina HOM05D000343 ORTHO05D000975 2.6e-07 58.9 34 85.3
TWI81G0800 Tripterygium wilfordii HOM05D000343 ORTHO05D000975 2.6e-07 58.9 34 85.3
MD06G1080800 Malus domestica HOM05D000343 ORTHO05D000975 3.4e-07 58.5 34 82.4
Oeu059485.1 Olea europaea HOM05D000343 ORTHO05D000975 3.4e-07 58.5 34 82.4
Prupe.5G097900 Prunus persica HOM05D000343 ORTHO05D000975 3.4e-07 58.5 34 82.4
ECA233G5387 Erigeron canadensis HOM05D000343 ORTHO05D000975 4.4e-07 58.2 34 79.4
MD14G1102600 Malus domestica HOM05D000343 ORTHO05D000975 4.4e-07 58.2 34 82.4
Rhsim02G0227500 Rhododendron simsii HOM05D000343 ORTHO05D000975 5.8e-07 57.8 34 82.4
RhsimUnG0098400 Rhododendron simsii HOM05D000343 ORTHO05D000975 5.8e-07 57.8 34 82.4
FvH4_5g02090 Fragaria vesca HOM05D000343 ORTHO05D000975 7.5e-07 57.4 34 79.4
FAN04G1303 Fragaria x ananassa HOM05D000343 ORTHO05D000975 7.5e-07 57.4 34 79.4
FAN13G1813 Fragaria x ananassa HOM05D000343 ORTHO05D000975 7.5e-07 57.4 34 79.4
FAN18G2702 Fragaria x ananassa HOM05D000343 ORTHO05D000975 7.5e-07 57.4 34 79.4
RcHm_v2.0_Chr7g0198141 Rosa chinensis HOM05D000343 ORTHO05D000975 7.5e-07 57.4 34 79.4
HanXRQChr13g0393281 Helianthus annuus HOM05D000343 ORTHO05D000975 9.8e-07 57.0 34 79.4
HanXRQChr13g0393291 Helianthus annuus HOM05D000343 ORTHO05D000975 9.8e-07 57.0 34 79.4
Lsat_1_v5_gn_6_5920 Lactuca sativa HOM05D000343 ORTHO05D000975 9.8e-07 57.0 34 76.5
PGR042G3785 Punica granatum HOM05D000343 ORTHO05D000975 9.8e-07 57.0 34 82.4
RcHm_v2.0_Chr7g0197781 Rosa chinensis HOM05D000343 ORTHO05D000975 9.8e-07 57.0 34 79.4
Aqoxy7G00353 Aquilegia oxysepala HOM05D000343 ORTHO05D000975 1.3e-06 56.6 34 82.4
ECA233G2101 Erigeron canadensis HOM05D000343 ORTHO05D000975 1.3e-06 56.6 34 76.5
Cpa.g.sc162.49 Carica papaya HOM05D000343 ORTHO05D000975 1.7e-06 56.2 34 79.4
Duzib084G0126 Durio zibethinus HOM05D000343 ORTHO05D000975 1.7e-06 56.2 34 82.4
Duzib205G2061 Durio zibethinus HOM05D000343 ORTHO05D000975 1.7e-06 56.2 34 82.4
Eucgr.E00578 Eucalyptus grandis HOM05D000343 ORTHO05D000975 1.7e-06 56.2 34 79.4
Gohir.D08G200000 Gossypium hirsutum HOM05D000343 ORTHO05D000975 1.7e-06 56.2 34 82.4
Gohir.D08G200050 Gossypium hirsutum HOM05D000343 ORTHO05D000975 1.7e-06 56.2 34 82.4
Gorai.004G210800 Gossypium raimondii HOM05D000343 ORTHO05D000975 1.7e-06 56.2 34 82.4
Manes.01G062700 Manihot esculenta HOM05D000343 ORTHO05D000975 1.7e-06 56.2 34 79.4
Manes.02G023200 Manihot esculenta HOM05D000343 ORTHO05D000975 1.7e-06 56.2 34 82.4
TAR629G2550 Trochodendron aralioides HOM05D000343 ORTHO05D000975 1.7e-06 56.2 34 76.5
GSVIVG01019769001 Vitis vinifera HOM05D000343 ORTHO05D000975 1.7e-06 56.2 34 79.4
Zm00001eb074380 Zea mays HOM05D000343 ORTHO05D000975 1.7e-06 56.2 33 84.8
CSS0042325 Camellia sinensis var. sinensis HOM05D000343 ORTHO05D000975 2.2e-06 55.8 34 76.5
CiPaw.11G136900 Carya illinoinensis HOM05D000343 ORTHO05D000975 2.2e-06 55.8 34 76.5
Ciclev10018819m.g Citrus clementina HOM05D000343 ORTHO05D000975 2.2e-06 55.8 33 78.8
FAN08G3515 Fragaria x ananassa HOM05D000343 ORTHO05D000975 2.2e-06 55.8 34 76.5
RcHm_v2.0_Chr7g0198201 Rosa chinensis HOM05D000343 ORTHO05D000975 2.2e-06 55.8 38 71.1
arahy.Tifrunner.gnm1.ann1.9DR5PQ Arachis hypogaea HOM05D000343 ORTHO05D000975 2.9e-06 55.5 34 79.4
Glyma.08G013600 Glycine max HOM05D000343 ORTHO05D000975 3.7e-06 55.1 34 76.5
Glyma.19G140000 Glycine max HOM05D000343 ORTHO05D000975 3.7e-06 55.1 34 76.5
Lj2A189T32 Lonicera japonica HOM05D000343 ORTHO05D000975 3.7e-06 55.1 34 73.5
Nn1g01487 Nelumbo nucifera HOM05D000343 ORTHO05D000975 3.7e-06 55.1 34 76.5
Os04g0556000 Oryza sativa ssp. japonica HOM05D000343 ORTHO05D000975 3.7e-06 55.1 34 79.4
Phvul.002G288400 Phaseolus vulgaris HOM05D000343 ORTHO05D000975 3.7e-06 55.1 34 76.5
Sc01g0009490 Simmondsia chinensis HOM05D000343 ORTHO05D000975 3.7e-06 55.1 34 79.4
Thecc.03G277000 Theobroma cacao HOM05D000343 ORTHO05D000975 3.7e-06 55.1 34 76.5
arahy.Tifrunner.gnm1.ann1.C06U18 Arachis hypogaea HOM05D000343 ORTHO05D000975 4.9e-06 54.7 34 76.5
arahy.Tifrunner.gnm1.ann1.NXU65W Arachis hypogaea HOM05D000343 ORTHO05D000975 4.9e-06 54.7 34 76.5
Cpa.g.sc74.17 Carica papaya HOM05D000343 ORTHO05D000975 4.9e-06 54.7 34 79.4
HanXRQChr07g0187181 Helianthus annuus HOM05D000343 ORTHO05D000975 4.9e-06 54.7 34 76.5
Potri.003G125600 Populus trichocarpa HOM05D000343 ORTHO05D000975 6.4e-06 54.3 34 73.5
Rhsim02G0227900 Rhododendron simsii HOM05D000343 ORTHO05D000975 6.4e-06 54.3 34 76.5
Sp7g11650 Schrenkiella parvula HOM05D000343 ORTHO05D000975 6.4e-06 54.3 34 76.5
TAR629G3050 Trochodendron aralioides HOM05D000343 ORTHO05D000975 6.4e-06 54.3 34 73.5
MSTRG.11993 Avicennia marina HOM05D000343 ORTHO05D000975 8.3e-06 53.9 34 79.4
DCAR_000605 Daucus carota HOM05D000343 ORTHO05D000975 8.3e-06 53.9 34 73.5
Sabra03G0089100 Salix brachista HOM05D000343 ORTHO05D000975 8.3e-06 53.9 34 73.5


User provided reference genes

Program Settings