Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold1337G53918 Striga asiatica HOM05D059031 ORTHO05D400859 3.6e-82 308.1 152 100.0
SGA_v2.0_scaffold79G25622 Striga asiatica HOM05D059031 ORTHO05D404869 8.5e-55 217.2 103 98.1
SGA_v2.0_scaffold192G40607 Striga asiatica HOM05D000147 ORTHO05D002016 2.6e-11 72.8 58 72.4
COL.COLO4_30261 Corchorus olitorius HOM05D000147 ORTHO05D002016 4.6e-08 62.0 58 62.1
MD01G1211300 Malus domestica HOM05D000147 ORTHO05D002016 4.6e-08 62.0 57 63.2
Prupe.2G303900 Prunus persica HOM05D000147 ORTHO05D002016 5.9e-08 61.6 57 61.4
DCAR_010646 Daucus carota HOM05D000147 ORTHO05D002016 7.8e-08 61.2 58 58.6
Gohir.A11G013100 Gossypium hirsutum HOM05D000147 ORTHO05D002016 7.8e-08 61.2 57 61.4
Gohir.D11G013400 Gossypium hirsutum HOM05D000147 ORTHO05D002016 7.8e-08 61.2 57 61.4
Gorai.007G013700 Gossypium raimondii HOM05D000147 ORTHO05D002016 7.8e-08 61.2 57 61.4
Peaxi162Scf00057g00020 Petunia axillaris HOM05D000147 ORTHO05D002016 1.0e-07 60.8 58 60.3
Sabra12G0024100 Salix brachista HOM05D000147 ORTHO05D002016 1.0e-07 60.8 58 60.3
MD07G1282000 Malus domestica HOM05D000147 ORTHO05D002016 1.3e-07 60.5 57 61.4
SalBow4G3216 Salvia bowleyana HOM05D000147 ORTHO05D002016 1.3e-07 60.5 58 60.3
ClCG01G000810 Citrullus lanatus HOM05D000147 ORTHO05D002016 1.7e-07 60.1 57 63.2
CsaV3_5G000950 Cucumis sativus L. HOM05D000147 ORTHO05D002016 1.7e-07 60.1 57 63.2
MELO3C005849.2 Cucumis melo HOM05D000147 ORTHO05D002016 2.3e-07 59.7 51 68.6
Sc13g0009350 Simmondsia chinensis HOM05D000147 ORTHO05D002016 2.3e-07 59.7 58 56.9
Migut.F00263 Erythranthe guttata HOM05D000147 ORTHO05D002016 3.0e-07 59.3 57 59.6
Potri.012G035400 Populus trichocarpa HOM05D000147 ORTHO05D002016 3.0e-07 59.3 58 58.6
Sed0026252 Sechium edule HOM05D000147 ORTHO05D002016 3.0e-07 59.3 57 61.4
CANSAT21G0096 Cannabis sativa HOM05D000147 ORTHO05D002016 3.9e-07 58.9 58 58.6
CiPaw.05G260200 Carya illinoinensis HOM05D000147 ORTHO05D002016 3.9e-07 58.9 57 59.6
Haze_00077 Corylus avellana HOM05D000147 ORTHO05D002016 3.9e-07 58.9 58 58.6
Sed0021442 Sechium edule HOM05D000147 ORTHO05D002016 3.9e-07 58.9 58 60.3
MSTRG.8484 Avicennia marina HOM05D000147 ORTHO05D002016 5.0e-07 58.5 57 56.1
EL10Ac3g05380 Beta vulgaris HOM05D000147 ORTHO05D002016 5.0e-07 58.5 54 59.3
Cfa016325 Carpinus fangiana HOM05D000147 ORTHO05D002016 5.0e-07 58.5 58 58.6
AUR62021080 Chenopodium quinoa HOM05D000147 ORTHO05D002016 5.0e-07 58.5 58 60.3
AUR62031451 Chenopodium quinoa HOM05D000147 ORTHO05D002016 5.0e-07 58.5 58 60.3
FvH4_7g30620 Fragaria vesca HOM05D000147 ORTHO05D002016 5.0e-07 58.5 57 57.9
FAN01G1431 Fragaria x ananassa HOM05D000147 ORTHO05D002016 5.0e-07 58.5 57 57.9
FAN06G0726 Fragaria x ananassa HOM05D000147 ORTHO05D002016 5.0e-07 58.5 57 57.9
FAN06G3549 Fragaria x ananassa HOM05D000147 ORTHO05D002016 5.0e-07 58.5 57 57.9
FAN10G0808 Fragaria x ananassa HOM05D000147 ORTHO05D002016 5.0e-07 58.5 57 57.9
FAN10G3905 Fragaria x ananassa HOM05D000147 ORTHO05D002016 5.0e-07 58.5 57 57.9
Manes.14G020400 Manihot esculenta HOM05D000147 ORTHO05D002016 5.0e-07 58.5 56 58.9
Oeu019241.1 Olea europaea HOM05D000147 ORTHO05D002016 5.0e-07 58.5 57 59.6
SalBow2G0799 Salvia bowleyana HOM05D000147 ORTHO05D002016 5.0e-07 58.5 54 61.1
VMungo0464G1063 Vigna mungo HOM05D000147 ORTHO05D002016 5.0e-07 58.5 58 56.9
Lj2g0027562 Lotus japonicus HOM05D000147 ORTHO05D002016 6.6e-07 58.2 57 57.9
Nitab4.5_0008026g0030 Nicotiana tabacum HOM05D000147 ORTHO05D002016 6.6e-07 58.2 58 56.9
Phvul.004G102900 Phaseolus vulgaris HOM05D000147 ORTHO05D002016 6.6e-07 58.2 58 55.2
Hund11703 Selenicereus undatus HOM05D000147 ORTHO05D002016 6.6e-07 58.2 58 56.9
Potri.015G026900 Populus trichocarpa HOM05D000147 ORTHO05D002016 8.6e-07 57.8 58 55.2
Sabra15G0019700 Salix brachista HOM05D000147 ORTHO05D002016 8.6e-07 57.8 58 55.2
Sabra15G0022600 Salix brachista HOM05D000147 ORTHO05D002016 8.6e-07 57.8 58 55.2
THA.LOC104825121 Tarenaya hassleriana HOM05D000147 ORTHO05D002016 8.6e-07 57.8 58 56.9
Cc02_g02160 Coffea canephora HOM05D000147 ORTHO05D002016 1.1e-06 57.4 57 57.9
DCAR_020290 Daucus carota HOM05D000147 ORTHO05D002016 1.1e-06 57.4 58 55.2
Lsat_1_v5_gn_9_57081 Lactuca sativa HOM05D000147 ORTHO05D002016 1.1e-06 57.4 58 56.9
Oeu022001.1 Olea europaea HOM05D000147 ORTHO05D002016 1.1e-06 57.4 57 57.9
THA.LOC104811940 Tarenaya hassleriana HOM05D000147 ORTHO05D002016 1.1e-06 57.4 49 63.3
CAN.G926.6 Capsicum annuum HOM05D000147 ORTHO05D002016 1.5e-06 57.0 58 55.2
Ca_05044_v3 Cicer arietinum L. HOM05D000147 ORTHO05D002016 1.5e-06 57.0 57 56.1
Hma1.2p1_0327F.1_g126570 Hydrangea macrophylla HOM05D000147 ORTHO05D002016 1.5e-06 57.0 57 57.9
QL09p012083 Quercus lobata HOM05D000147 ORTHO05D002016 1.5e-06 57.0 56 57.1
PGSC0003DMG400019963 Solanum tuberosum HOM05D000147 ORTHO05D002016 1.5e-06 57.0 58 56.9
Ah.07g206320 Amaranthus hybridus HOM05D000147 ORTHO05D002016 1.9e-06 56.6 58 58.6
Migut.F01065 Erythranthe guttata HOM05D000147 ORTHO05D002016 1.9e-06 56.6 55 58.2
Glyma.16G173700 Glycine max HOM05D000147 ORTHO05D002016 1.9e-06 56.6 57 56.1
vmacro10091 Vaccinium macrocarpon HOM05D000147 ORTHO05D002016 1.9e-06 56.6 58 58.6
Aa31sc139G10 Aethionema arabicum HOM05D000147 ORTHO05D002016 2.5e-06 56.2 58 55.2
Carub.0008s1305 Capsella rubella HOM05D000147 ORTHO05D002016 2.5e-06 56.2 58 56.9
Cpa.g.sc3.10 Carica papaya HOM05D000147 ORTHO05D002016 2.5e-06 56.2 56 57.1
DCAR_008899 Daucus carota HOM05D000147 ORTHO05D002016 2.5e-06 56.2 58 53.4
ECA232G2094 Erigeron canadensis HOM05D000147 ORTHO05D002016 2.5e-06 56.2 56 57.1
Medtr6g033740 Medicago truncatula HOM05D000147 ORTHO05D002016 2.5e-06 56.2 54 57.4
Oeu008847.1 Olea europaea HOM05D000147 ORTHO05D002016 2.5e-06 56.2 58 55.2
arahy.Tifrunner.gnm1.ann1.FDXU13 Arachis hypogaea HOM05D000147 ORTHO05D002016 3.3e-06 55.8 57 56.1
arahy.Tifrunner.gnm1.ann1.YP5MKI Arachis hypogaea HOM05D000147 ORTHO05D002016 3.3e-06 55.8 57 56.1
CsaV3_1G023090 Cucumis sativus L. HOM05D000147 ORTHO05D001254 3.3e-06 55.8 32 87.5
Glyma.09G127000 Glycine max HOM05D000147 ORTHO05D002016 3.3e-06 55.8 57 56.1
Glyma.16G174900 Glycine max HOM05D000147 ORTHO05D001254 3.3e-06 55.8 56 57.1
Glyma.20G163900 Glycine max HOM05D000147 ORTHO05D002016 3.3e-06 55.8 57 52.6
Manes.06G154400 Manihot esculenta HOM05D000147 ORTHO05D002016 3.3e-06 55.8 57 54.4
Nitab4.5_0001748g0070 Nicotiana tabacum HOM05D000147 ORTHO05D002016 3.3e-06 55.8 58 55.2
PGR142G0841 Punica granatum HOM05D000147 ORTHO05D002016 3.3e-06 55.8 57 54.4
Hund04808 Selenicereus undatus HOM05D000147 ORTHO05D002016 3.3e-06 55.8 58 56.9
Solyc03g007760.3 Solanum lycopersicum HOM05D000147 ORTHO05D002016 3.3e-06 55.8 54 59.3
Sopen03g003680 Solanum pennellii HOM05D000147 ORTHO05D002016 3.3e-06 55.8 54 59.3
TWI23G0275 Tripterygium wilfordii HOM05D000147 ORTHO05D002016 3.3e-06 55.8 58 51.7
Dinv44129 Davidia involucrata HOM05D000147 ORTHO05D002016 4.3e-06 55.5 57 54.4
Thhalv10012687m.g Eutrema salsugineum HOM05D000147 ORTHO05D002016 4.3e-06 55.5 57 57.9
Lalb_Chr03g0035071 Lupinus albus HOM05D000147 ORTHO05D002016 4.3e-06 55.5 57 54.4
Thecc.03G188200 Theobroma cacao HOM05D000147 ORTHO05D002016 4.3e-06 55.5 57 56.1
GSVIVG01028790001 Vitis vinifera HOM05D000147 ORTHO05D002016 4.3e-06 55.5 57 59.6
MSTRG.8692 Avicennia marina HOM05D000147 ORTHO05D002016 5.6e-06 55.1 59 55.9
Duzib205G0436 Durio zibethinus HOM05D000147 ORTHO05D002016 5.6e-06 55.1 57 56.1
Glyma.05G212900 Glycine max HOM05D000147 ORTHO05D002016 5.6e-06 55.1 59 57.6
Glyma.16G174200 Glycine max HOM05D000147 ORTHO05D001254 5.6e-06 55.1 57 54.4
Gohir.D12G255100 Gossypium hirsutum HOM05D000147 ORTHO05D002016 5.6e-06 55.1 57 54.4
Gorai.008G272700 Gossypium raimondii HOM05D000147 ORTHO05D002016 5.6e-06 55.1 57 54.4
SGA_v2.0_scaffold55G19718 Striga asiatica HOM05D000147 ORTHO05D002016 5.6e-06 55.1 57 54.4
unitig_747.g21857 Utricularia gibba HOM05D000147 ORTHO05D002016 5.6e-06 55.1 57 54.4
GSVIVG01028792001 Vitis vinifera HOM05D000147 ORTHO05D002016 5.6e-06 55.1 57 56.1
Atru.chr1.325 Acer truncatum HOM05D000147 ORTHO05D002016 7.3e-06 54.7 57 54.4
CSS0040841 Camellia sinensis var. sinensis HOM05D000147 ORTHO05D002016 7.3e-06 54.7 51 60.8
Gohir.A12G254466 Gossypium hirsutum HOM05D000147 ORTHO05D002016 7.3e-06 54.7 57 54.4
Psat1g104240 Pisum sativum HOM05D000147 ORTHO05D002016 7.3e-06 54.7 54 57.4
BcaC06g32652 Brassica carinata HOM05D000147 ORTHO05D002016 9.5e-06 54.3 58 53.4
A03p57650 Brassica napus HOM05D000147 ORTHO05D002016 9.5e-06 54.3 58 53.4
C07p55860 Brassica napus HOM05D000147 ORTHO05D002016 9.5e-06 54.3 58 53.4
BraA03t14831Z Brassica rapa HOM05D000147 ORTHO05D002016 9.5e-06 54.3 58 53.4
CARHR265830 Cardamine hirsuta HOM05D000147 ORTHO05D002016 9.5e-06 54.3 58 55.2
CDE02G2188 Ceratophyllum demersum HOM05D000147 ORTHO05D002016 9.5e-06 54.3 58 56.9
Duzib068G0668 Durio zibethinus HOM05D000147 ORTHO05D002016 9.5e-06 54.3 57 54.4
Potri.001G097600 Populus trichocarpa HOM05D000147 ORTHO05D002016 9.5e-06 54.3 52 59.6
Sp6g15050 Schrenkiella parvula HOM05D000147 ORTHO05D002016 9.5e-06 54.3 52 61.5
TPR.G36615 Trifolium pratense HOM05D000147 ORTHO05D002016 9.5e-06 54.3 56 55.4


User provided reference genes

Program Settings