Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold131G34487 Striga asiatica HOM05D000504 ORTHO05D000403 2.5e-127 458.8 231 100.0
SGA_v2.0_scaffold236G43729 Striga asiatica HOM05D001569 ORTHO05D020569 2.6e-15 86.7 78 59.0
SGA_v2.0_scaffold205G41787 Striga asiatica HOM05D000504 ORTHO05D000403 2.9e-14 83.2 104 51.0
SGA_v2.0_scaffold143G35758 Striga asiatica HOM05D000504 ORTHO05D000403 3.8e-14 82.8 99 50.5
Dinv34532 Davidia involucrata HOM05D001569 ORTHO05D001723 1.1e-08 64.7 65 58.5
Potri.012G113500 Populus trichocarpa HOM05D001569 ORTHO05D001723 1.1e-08 64.7 65 56.9
Cc00_g13050 Coffea canephora HOM05D001569 ORTHO05D001723 1.4e-08 64.3 65 56.9
QL09p027349 Quercus lobata HOM05D001569 ORTHO05D001723 1.8e-08 63.9 65 56.9
SGA_v2.0_scaffold60G20849 Striga asiatica HOM05D001569 ORTHO05D001723 1.8e-08 63.9 65 56.9
Peaxi162Scf00304g00091 Petunia axillaris HOM05D001569 ORTHO05D001723 2.4e-08 63.5 65 56.9
Actinidia13624 Actinidia chinensis HOM05D001569 ORTHO05D001316 3.1e-08 63.2 66 56.1
Dinv16895 Davidia involucrata HOM05D001569 ORTHO05D001723 4.1e-08 62.8 65 56.9
Actinidia31762 Actinidia chinensis HOM05D001569 ORTHO05D001723 5.3e-08 62.4 65 55.4
unitig_46.g18757 Utricularia gibba HOM05D001569 ORTHO05D001723 5.3e-08 62.4 65 55.4
CSS0034454 Camellia sinensis var. sinensis HOM05D001569 ORTHO05D001723 6.9e-08 62.0 65 53.8
ClCG01G004910 Citrullus lanatus HOM05D001569 ORTHO05D001723 6.9e-08 62.0 65 53.8
ClCG07G017180 Citrullus lanatus HOM05D001569 ORTHO05D001723 6.9e-08 62.0 65 53.8
MELO3C005444.2 Cucumis melo HOM05D001569 ORTHO05D001723 6.9e-08 62.0 65 53.8
CsaV3_4G004380 Cucumis sativus L. HOM05D001569 ORTHO05D001723 6.9e-08 62.0 65 53.8
Rhsim09G0188300 Rhododendron simsii HOM05D001569 ORTHO05D001723 6.9e-08 62.0 65 58.5
vmacro09931 Vaccinium macrocarpon HOM05D001569 ORTHO05D001723 6.9e-08 62.0 65 58.5
GSVIVG01024481001 Vitis vinifera HOM05D001569 ORTHO05D001723 6.9e-08 62.0 65 55.4
Nn1g00764 Nelumbo nucifera HOM05D001569 ORTHO05D001723 9.0e-08 61.6 65 53.8
Potri.015G111000 Populus trichocarpa HOM05D001569 ORTHO05D001723 9.0e-08 61.6 65 55.4
Sed0016010 Sechium edule HOM05D001569 ORTHO05D001723 9.0e-08 61.6 65 53.8
unitig_37.g12483 Utricularia gibba HOM05D001569 ORTHO05D001723 9.0e-08 61.6 65 53.8
Nn6g33761 Nelumbo nucifera HOM05D001569 ORTHO05D001723 1.2e-07 61.2 65 52.3
Nitab4.5_0002236g0060 Nicotiana tabacum HOM05D001569 ORTHO05D001723 1.2e-07 61.2 65 56.9
Nitab4.5_0002359g0020 Nicotiana tabacum HOM05D001569 ORTHO05D001723 1.2e-07 61.2 65 55.4
Nitab4.5_0004099g0020 Nicotiana tabacum HOM05D001569 ORTHO05D001723 1.2e-07 61.2 65 55.4
Actinidia01033 Actinidia chinensis HOM05D001569 ORTHO05D001723 1.5e-07 60.8 65 52.3
CSS0007238 Camellia sinensis var. sinensis HOM05D001569 ORTHO05D001723 1.5e-07 60.8 65 52.3
MELO3C017628.2 Cucumis melo HOM05D001569 ORTHO05D001723 1.5e-07 60.8 65 52.3
Migut.F00544 Erythranthe guttata HOM05D001569 ORTHO05D001723 1.5e-07 60.8 65 53.8
Hma1.2p1_1014F.1_g247890 Hydrangea macrophylla HOM05D001569 ORTHO05D001723 1.5e-07 60.8 65 55.4
Hma1.2p1_2647F.1_g326060 Hydrangea macrophylla HOM05D001569 ORTHO05D001723 1.5e-07 60.8 65 55.4
Oeu030872.1 Olea europaea HOM05D001569 ORTHO05D001723 1.5e-07 60.8 65 53.8
SalBow3G1905 Salvia bowleyana HOM05D001569 ORTHO05D001723 1.5e-07 60.8 65 53.8
Solyc03g094010.3 Solanum lycopersicum HOM05D001569 ORTHO05D001723 1.5e-07 60.8 65 53.8
PGSC0003DMG400008344 Solanum tuberosum HOM05D001569 ORTHO05D001723 1.5e-07 60.8 65 53.8
MSTRG.149 Avicennia marina HOM05D001569 ORTHO05D001723 2.0e-07 60.5 65 52.3
Cpa.g.sc13.219 Carica papaya HOM05D001569 ORTHO05D001723 2.0e-07 60.5 65 53.8
FAN03G0798 Fragaria x ananassa HOM05D001569 ORTHO05D001723 2.0e-07 60.5 65 53.8
Sabra12G0082700 Salix brachista HOM05D001569 ORTHO05D001723 2.0e-07 60.5 65 53.8
CiPaw.08G042800 Carya illinoinensis HOM05D001569 ORTHO05D001723 2.6e-07 60.1 65 52.3
ECA233G4663 Erigeron canadensis HOM05D001569 ORTHO05D001723 2.6e-07 60.1 66 53.0
Eucgr.A02935 Eucalyptus grandis HOM05D001569 ORTHO05D001723 2.6e-07 60.1 65 52.3
FvH4_7g26540 Fragaria vesca HOM05D001569 ORTHO05D001723 2.6e-07 60.1 65 52.3
FAN06G2931 Fragaria x ananassa HOM05D001569 ORTHO05D001723 2.6e-07 60.1 65 52.3
Sed0011156 Sechium edule HOM05D001569 ORTHO05D001723 2.6e-07 60.1 65 50.8
Ciclev10031681m.g Citrus clementina HOM05D001569 ORTHO05D001723 3.4e-07 59.7 65 50.8
CsaV3_5G005130 Cucumis sativus L. HOM05D001569 ORTHO05D001723 3.4e-07 59.7 65 52.3
Migut.F01211 Erythranthe guttata HOM05D001569 ORTHO05D001723 3.4e-07 59.7 65 52.3
Nitab4.5_0000103g0200 Nicotiana tabacum HOM05D001569 ORTHO05D001723 3.4e-07 59.7 65 53.8
SMO292G0022 Selaginella moellendorffii HOM05D001569 ORTHO05D020569 3.4e-07 59.7 54 61.1
SMO302G0001 Selaginella moellendorffii HOM05D001569 ORTHO05D020569 3.4e-07 59.7 54 61.1
SMO302G0050 Selaginella moellendorffii HOM05D001569 ORTHO05D020569 3.4e-07 59.7 54 61.1
Sopen03g024860 Solanum pennellii HOM05D001569 ORTHO05D001723 3.4e-07 59.7 65 52.3
Peaxi162Scf00167g01019 Petunia axillaris HOM05D001569 ORTHO05D001723 4.5e-07 59.3 65 52.3
Prupe.2G269800 Prunus persica HOM05D001569 ORTHO05D001723 4.5e-07 59.3 65 52.3
Sabra15G0132800 Salix brachista HOM05D001569 ORTHO05D001723 4.5e-07 59.3 65 53.8
SalBow2G0929 Salvia bowleyana HOM05D001569 ORTHO05D001723 4.5e-07 59.3 65 52.3
DCAR_020164 Daucus carota HOM05D001569 ORTHO05D001723 5.9e-07 58.9 65 52.3
RcHm_v2.0_Chr1g0373211 Rosa chinensis HOM05D001569 ORTHO05D001723 5.9e-07 58.9 65 52.3
PGR042G2945 Punica granatum HOM05D001569 ORTHO05D001723 7.7e-07 58.5 65 52.3
TWI14G1182 Tripterygium wilfordii HOM05D001569 ORTHO05D001723 7.7e-07 58.5 65 52.3
HPP92_020917 Vanilla planifolia HOM05D001569 ORTHO05D001723 7.7e-07 58.5 65 52.3
GSVIVG01024475001 Vitis vinifera HOM05D001569 ORTHO05D001723 7.7e-07 58.5 65 52.3
Aa31LG3G18950 Aethionema arabicum HOM05D001569 ORTHO05D001723 1.0e-06 58.2 65 52.3
CARHR205710 Cardamine hirsuta HOM05D001569 ORTHO05D001723 1.0e-06 58.2 65 52.3
DCAR_014646 Daucus carota HOM05D001569 ORTHO05D001723 1.0e-06 58.2 67 50.7
Sp6g35430 Schrenkiella parvula HOM05D001569 ORTHO05D001723 1.0e-06 58.2 65 52.3
Sc09g0008000 Simmondsia chinensis HOM05D001569 ORTHO05D001723 1.0e-06 58.2 65 52.3
Atru.chr6.1974 Acer truncatum HOM05D001569 ORTHO05D001723 1.3e-06 57.8 65 50.8
CANSAT56G1247 Cannabis sativa HOM05D001569 ORTHO05D001723 1.3e-06 57.8 65 50.8
HanXRQChr05g0144391 Helianthus annuus HOM05D001569 ORTHO05D001723 1.3e-06 57.8 65 52.3
HanXRQChr08g0223371 Helianthus annuus HOM05D001569 ORTHO05D001723 1.3e-06 57.8 65 53.8
Peaxi162Scf00073g00181 Petunia axillaris HOM05D001569 ORTHO05D001723 1.3e-06 57.8 65 52.3
CiPaw.07G182900 Carya illinoinensis HOM05D001569 ORTHO05D001723 1.7e-06 57.4 65 50.8
Thhalv10013680m.g Eutrema salsugineum HOM05D001569 ORTHO05D001723 1.7e-06 57.4 65 52.3
Nitab4.5_0014508g0010 Nicotiana tabacum HOM05D001569 ORTHO05D001723 1.7e-06 57.4 65 52.3
CAN.G503.23 Capsicum annuum HOM05D001569 ORTHO05D001723 2.2e-06 57.0 65 50.8
COL.COLO4_37306 Corchorus olitorius HOM05D001569 ORTHO05D001723 2.2e-06 57.0 65 50.8
Duzib068G1148 Durio zibethinus HOM05D001569 ORTHO05D001723 2.2e-06 57.0 65 50.8
Manes.14G041300 Manihot esculenta HOM05D001569 ORTHO05D001723 2.2e-06 57.0 65 52.3
PSO063G3246 Papaver somniferum HOM05D001569 ORTHO05D001723 2.2e-06 57.0 65 49.2
PSO782G4299 Papaver somniferum HOM05D001569 ORTHO05D001723 2.2e-06 57.0 65 49.2
SMO361G0637 Selaginella moellendorffii HOM05D001569 ORTHO05D001723 2.2e-06 57.0 65 52.3
Thecc.03G145200 Theobroma cacao HOM05D001569 ORTHO05D001723 2.2e-06 57.0 65 50.8
AL6G17740 Arabidopsis lyrata HOM05D001569 ORTHO05D001723 2.9e-06 56.6 65 50.8
AT5G07440 Arabidopsis thaliana HOM05D001569 ORTHO05D001723 2.9e-06 56.6 65 50.8
BcaB05g21617 Brassica carinata HOM05D001569 ORTHO05D001723 2.9e-06 56.6 65 50.8
C02p03130 Brassica napus HOM05D001569 ORTHO05D001723 2.9e-06 56.6 65 50.8
BolC2t06275H Brassica oleracea HOM05D001569 ORTHO05D001723 2.9e-06 56.6 65 50.8
BraA02t04919Z Brassica rapa HOM05D001569 ORTHO05D001723 2.9e-06 56.6 65 50.8
BcaC06g32438 Brassica carinata HOM05D001569 ORTHO05D001723 3.8e-06 56.2 65 50.8
Gohir.D03G104800 Gossypium hirsutum HOM05D001569 ORTHO05D001723 3.8e-06 56.2 65 49.2
Gorai.003G110800 Gossypium raimondii HOM05D001569 ORTHO05D001723 3.8e-06 56.2 65 49.2
Solyc05g052100.3 Solanum lycopersicum HOM05D001569 ORTHO05D001723 3.8e-06 56.2 65 50.8
Sopen05g030640 Solanum pennellii HOM05D001569 ORTHO05D001723 3.8e-06 56.2 65 50.8
DCAR_018071 Daucus carota HOM05D001569 ORTHO05D001723 5.0e-06 55.8 65 49.2
Duzib084G0990 Durio zibethinus HOM05D001569 ORTHO05D001723 5.0e-06 55.8 65 49.2
Lj1A972T39 Lonicera japonica HOM05D001569 ORTHO05D001723 5.0e-06 55.8 65 50.8
Lj1A973T45 Lonicera japonica HOM05D001569 ORTHO05D001723 5.0e-06 55.8 65 50.8
SMO226G0003 Selaginella moellendorffii HOM05D001569 ORTHO05D001723 5.0e-06 55.8 65 49.2
SMO361G0311 Selaginella moellendorffii HOM05D001569 ORTHO05D001723 5.0e-06 55.8 65 49.2
SEGI_41245 Sequoiadendron giganteum HOM05D001569 ORTHO05D001723 5.0e-06 55.8 65 50.8
TWI23G0258 Tripterygium wilfordii HOM05D001569 ORTHO05D001723 5.0e-06 55.8 65 50.8
TAR272G0004 Trochodendron aralioides HOM05D001569 ORTHO05D001723 5.0e-06 55.8 65 49.2
TAR375G1107 Trochodendron aralioides HOM05D001569 ORTHO05D001723 5.0e-06 55.8 65 49.2
Carub.0006s0641 Capsella rubella HOM05D001569 ORTHO05D001723 6.5e-06 55.5 65 49.2
Lsat_1_v5_gn_8_11521 Lactuca sativa HOM05D001569 ORTHO05D001723 6.5e-06 55.5 65 52.3
Medtr5g013470 Medicago truncatula HOM05D001569 ORTHO05D001723 6.5e-06 55.5 65 49.2
SGA_v2.0_scaffold44G16593 Striga asiatica HOM05D001569 ORTHO05D001723 6.5e-06 55.5 33 81.8
BcaB01g05702 Brassica carinata HOM05D001569 ORTHO05D001723 8.5e-06 55.1 65 49.2
BcaB01g06039 Brassica carinata HOM05D001569 ORTHO05D001723 8.5e-06 55.1 65 49.2
BcaC06g32475 Brassica carinata HOM05D001569 ORTHO05D001723 8.5e-06 55.1 65 49.2
A03p03260 Brassica napus HOM05D001569 ORTHO05D001723 8.5e-06 55.1 65 49.2
A10p29180 Brassica napus HOM05D001569 ORTHO05D001723 8.5e-06 55.1 65 49.2
C03p03690 Brassica napus HOM05D001569 ORTHO05D001723 8.5e-06 55.1 65 49.2
C09p69570 Brassica napus HOM05D001569 ORTHO05D001723 8.5e-06 55.1 65 49.2
BolC3t12907H Brassica oleracea HOM05D001569 ORTHO05D001723 8.5e-06 55.1 65 49.2
BolC9t59700H Brassica oleracea HOM05D001569 ORTHO05D001723 8.5e-06 55.1 65 49.2
BraA03t09678Z Brassica rapa HOM05D001569 ORTHO05D001723 8.5e-06 55.1 65 49.2
BraA10t44965Z Brassica rapa HOM05D001569 ORTHO05D001723 8.5e-06 55.1 65 49.2
CAN.G297.13 Capsicum annuum HOM05D001569 ORTHO05D001723 8.5e-06 55.1 65 49.2
Ca_24612_v3 Cicer arietinum L. HOM05D001569 ORTHO05D001723 8.5e-06 55.1 65 49.2
Lj8C49T14 Lonicera japonica HOM05D001569 ORTHO05D001723 8.5e-06 55.1 65 52.3
Lj2g0026992 Lotus japonicus HOM05D001569 ORTHO05D001723 8.5e-06 55.1 65 47.7
MD01G1174400 Malus domestica HOM05D001569 ORTHO05D001723 8.5e-06 55.1 65 50.8
MD07G1241100 Malus domestica HOM05D001569 ORTHO05D001723 8.5e-06 55.1 65 49.2
Manes.06G129700 Manihot esculenta HOM05D001569 ORTHO05D001723 8.5e-06 55.1 65 49.2
THA.LOC104801660 Tarenaya hassleriana HOM05D001569 ORTHO05D001723 8.5e-06 55.1 65 49.2


User provided reference genes

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