Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold131G34402 Striga asiatica HOM05D005910 ORTHO05D007088 2.8e-100 368.6 189 100.0
SGA_v2.0_scaffold472G52090 Striga asiatica HOM05D005910 ORTHO05D007088 5.8e-29 131.7 82 86.6
SGA_v2.0_scaffold69G23042 Striga asiatica HOM05D005910 ORTHO05D007088 1.9e-16 90.1 54 92.6
MSTRG.19925 Avicennia marina HOM05D005910 ORTHO05D007088 2.5e-11 73.2 52 78.8
Migut.J01866 Erythranthe guttata HOM05D005910 ORTHO05D007088 2.5e-11 73.2 52 78.8
unitig_26.g10040 Utricularia gibba HOM05D005910 ORTHO05D007088 1.6e-10 70.5 55 78.2
Oeu057587.1 Olea europaea HOM05D005910 ORTHO05D007088 2.5e-08 63.2 52 75.0
Sed0016712 Sechium edule HOM05D005910 ORTHO05D007088 2.5e-08 63.2 54 70.4
CSS0007798 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 7.4e-08 61.6 54 70.4
COL.COLO4_29362 Corchorus olitorius HOM05D005910 ORTHO05D007088 2.2e-07 60.1 54 70.4
DCAR_019862 Daucus carota HOM05D005910 ORTHO05D007088 2.2e-07 60.1 54 66.7
Gohir.D09G124900 Gossypium hirsutum HOM05D005910 ORTHO05D007088 2.2e-07 60.1 54 70.4
Gorai.006G143800 Gossypium raimondii HOM05D005910 ORTHO05D007088 2.2e-07 60.1 54 70.4
Thecc.05G175100 Theobroma cacao HOM05D005910 ORTHO05D007088 2.2e-07 60.1 54 70.4
CANSAT64G0849 Cannabis sativa HOM05D005910 ORTHO05D007088 2.8e-07 59.7 54 68.5
Duzib106G1486 Durio zibethinus HOM05D005910 ORTHO05D007088 2.8e-07 59.7 54 70.4
PGR142G2565 Punica granatum HOM05D005910 ORTHO05D007088 3.7e-07 59.3 54 68.5
BcaB04g21099 Brassica carinata HOM05D005910 ORTHO05D007088 4.8e-07 58.9 54 68.5
Hma1.2p1_0124F.1_g058350 Hydrangea macrophylla HOM05D005910 ORTHO05D007088 4.8e-07 58.9 54 72.2
MD12G1054500 Malus domestica HOM05D005910 ORTHO05D007088 4.8e-07 58.9 54 68.5
Rhsim04G0093900 Rhododendron simsii HOM05D005910 ORTHO05D007088 4.8e-07 58.9 55 69.1
GSVIVG01033465001 Vitis vinifera HOM05D005910 ORTHO05D007088 4.8e-07 58.9 54 68.5
BolC1t05270H Brassica oleracea HOM05D005910 ORTHO05D007088 6.3e-07 58.5 54 68.5
BraA01t04144Z Brassica rapa HOM05D005910 ORTHO05D007088 6.3e-07 58.5 54 68.5
CARHR206550 Cardamine hirsuta HOM05D005910 ORTHO05D007088 6.3e-07 58.5 54 72.2
CiPaw.10G025100 Carya illinoinensis HOM05D005910 ORTHO05D007088 8.2e-07 58.2 54 66.7
Cc06_g15530 Coffea canephora HOM05D005910 ORTHO05D007088 8.2e-07 58.2 54 66.7
Dinv16345 Davidia involucrata HOM05D005910 ORTHO05D007088 8.2e-07 58.2 54 70.4
Actinidia38597 Actinidia chinensis HOM05D005910 ORTHO05D007088 1.1e-06 57.8 54 66.7
FvH4_6g21840 Fragaria vesca HOM05D005910 ORTHO05D007088 1.1e-06 57.8 54 64.8
FAN02G0902 Fragaria x ananassa HOM05D005910 ORTHO05D007088 1.1e-06 57.8 54 64.8
FAN05G0623 Fragaria x ananassa HOM05D005910 ORTHO05D007088 1.1e-06 57.8 54 64.8
FAN14G5103 Fragaria x ananassa HOM05D005910 ORTHO05D007088 1.1e-06 57.8 54 64.8
Gohir.A09G128900 Gossypium hirsutum HOM05D005910 ORTHO05D007088 1.1e-06 57.8 54 68.5
QL07p024560 Quercus lobata HOM05D005910 ORTHO05D007088 1.1e-06 57.8 59 59.3
Atru.chr8.1156 Acer truncatum HOM05D005910 ORTHO05D007088 1.4e-06 57.4 54 68.5
AL6G16750 Arabidopsis lyrata HOM05D005910 ORTHO05D007088 1.4e-06 57.4 54 70.4
BcaC09g48209 Brassica carinata HOM05D005910 ORTHO05D007088 1.4e-06 57.4 54 66.7
CARHR086590 Cardamine hirsuta HOM05D005910 ORTHO05D007088 1.4e-06 57.4 54 66.7
Thhalv10022159m.g Eutrema salsugineum HOM05D005910 ORTHO05D007088 1.4e-06 57.4 54 66.7
Psat3g091080 Pisum sativum HOM05D005910 ORTHO05D007088 1.4e-06 57.4 52 71.2
Rhsim04G0095300 Rhododendron simsii HOM05D005910 ORTHO05D007088 1.4e-06 57.4 54 63.0
Sp3g10260 Schrenkiella parvula HOM05D005910 ORTHO05D007088 1.4e-06 57.4 54 66.7
TWI77G0716 Tripterygium wilfordii HOM05D005910 ORTHO05D007088 1.4e-06 57.4 54 64.8
AL3G23640 Arabidopsis lyrata HOM05D005910 ORTHO05D007088 1.8e-06 57.0 54 66.7
AT3G12030 Arabidopsis thaliana HOM05D005910 ORTHO05D007088 1.8e-06 57.0 54 66.7
AT5G06660 Arabidopsis thaliana HOM05D005910 ORTHO05D007088 1.8e-06 57.0 54 70.4
Carub.0003s1137 Capsella rubella HOM05D005910 ORTHO05D007088 1.8e-06 57.0 54 66.7
Carub.0006s0554 Capsella rubella HOM05D005910 ORTHO05D007088 1.8e-06 57.0 54 64.8
CiPaw.09G028200 Carya illinoinensis HOM05D005910 ORTHO05D007088 1.8e-06 57.0 54 64.8
Dinv24042 Davidia involucrata HOM05D005910 ORTHO05D007088 1.8e-06 57.0 54 68.5
Lsat_1_v5_gn_2_56160 Lactuca sativa HOM05D005910 ORTHO05D007088 1.8e-06 57.0 52 71.2
Solyc10g079000.1 Solanum lycopersicum HOM05D005910 ORTHO05D007088 1.8e-06 57.0 52 65.4
Sopen10g029620 Solanum pennellii HOM05D005910 ORTHO05D007088 1.8e-06 57.0 52 65.4
PGSC0003DMG400011451 Solanum tuberosum HOM05D005910 ORTHO05D007088 1.8e-06 57.0 52 65.4
Manes.09G037701 Manihot esculenta HOM05D005910 ORTHO05D007088 2.4e-06 56.6 54 66.7
THA.LOC104799285 Tarenaya hassleriana HOM05D005910 ORTHO05D007088 2.4e-06 56.6 54 66.7
ClCG10G017690 Citrullus lanatus HOM05D005910 ORTHO05D007088 3.1e-06 56.2 54 66.7
Thhalv10016091m.g Eutrema salsugineum HOM05D005910 ORTHO05D007088 3.1e-06 56.2 54 70.4
Pp3c21_11350 Physcomitrium patens HOM05D005910 ORTHO05D007088 3.1e-06 56.2 54 64.8
SMO367G0437 Selaginella moellendorffii HOM05D005910 ORTHO05D007088 3.1e-06 56.2 54 66.7
MELO3C009607.2 Cucumis melo HOM05D005910 ORTHO05D007088 4.1e-06 55.8 54 64.8
CsaV3_3G038630 Cucumis sativus L. HOM05D005910 ORTHO05D007088 4.1e-06 55.8 54 64.8
CAN.G960.19 Capsicum annuum HOM05D005910 ORTHO05D007088 5.3e-06 55.5 52 63.5
Cpa.g.sc85.46 Carica papaya HOM05D005910 ORTHO05D007088 5.3e-06 55.5 54 66.7
Ca_08246_v3 Cicer arietinum L. HOM05D005910 ORTHO05D007088 5.3e-06 55.5 52 69.2
Glyma.16G043900 Glycine max HOM05D005910 ORTHO05D007088 5.3e-06 55.5 52 69.2
Glyma.19G108300 Glycine max HOM05D005910 ORTHO05D007088 5.3e-06 55.5 52 69.2
Lalb_Chr14g0364291 Lupinus albus HOM05D005910 ORTHO05D007088 5.3e-06 55.5 52 69.2
Medtr7g085050 Medicago truncatula HOM05D005910 ORTHO05D007088 5.3e-06 55.5 52 69.2
Phvul.001G097100 Phaseolus vulgaris HOM05D005910 ORTHO05D007088 5.3e-06 55.5 52 69.2
RcHm_v2.0_Chr3g0479191 Rosa chinensis HOM05D005910 ORTHO05D007088 5.3e-06 55.5 54 66.7
TPR.G5912 Trifolium pratense HOM05D005910 ORTHO05D007088 5.3e-06 55.5 52 69.2
VMungo1383G3424 Vigna mungo HOM05D005910 ORTHO05D007088 5.3e-06 55.5 52 69.2
Aa31LG3G5420 Aethionema arabicum HOM05D005910 ORTHO05D007088 6.9e-06 55.1 54 64.8
Prupe.7G082200 Prunus persica HOM05D005910 ORTHO05D007088 6.9e-06 55.1 54 66.7
Mapoly0107s0023 Marchantia polymorpha HOM05D005910 ORTHO05D007088 9.0e-06 54.7 54 70.4
Sp6g36210 Schrenkiella parvula HOM05D005910 ORTHO05D007088 9.0e-06 54.7 54 66.7


User provided reference genes

Program Settings