Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold131G34372 Striga asiatica HOM05D004289 ORTHO05D005141 4.0e-48 194.5 103 100.0
Migut.B00750 Erythranthe guttata HOM05D004289 ORTHO05D005141 2.6e-31 138.7 104 69.2
MSTRG.20324 Avicennia marina HOM05D004289 ORTHO05D005141 7.1e-29 130.6 103 69.9
Duzib052G0484 Durio zibethinus HOM05D004289 ORTHO05D005141 1.9e-26 122.5 104 59.6
Thecc.02G016600 Theobroma cacao HOM05D004289 ORTHO05D005141 3.6e-25 118.2 104 58.7
Gohir.D02G237200 Gossypium hirsutum HOM05D004289 ORTHO05D005141 3.1e-24 115.2 104 58.7
Gorai.005G265800 Gossypium raimondii HOM05D004289 ORTHO05D005141 3.1e-24 115.2 104 58.7
Gohir.A03G215700 Gossypium hirsutum HOM05D004289 ORTHO05D005141 5.2e-24 114.4 104 57.7
Sabra01G0171700 Salix brachista HOM05D004289 ORTHO05D005141 2.6e-23 112.1 106 59.4
CSS0038337 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 7.6e-23 110.5 106 55.7
Potri.004G226100 Populus trichocarpa HOM05D004289 ORTHO05D005141 1.3e-22 109.8 106 58.5
Nitab4.5_0005169g0070 Nicotiana tabacum HOM05D004289 ORTHO05D005141 2.2e-22 109.0 80 68.8
COL.COLO4_17708 Corchorus olitorius HOM05D004289 ORTHO05D005141 3.8e-22 108.2 104 53.8
RcHm_v2.0_Chr7g0220501 Rosa chinensis HOM05D004289 ORTHO05D005141 4.9e-22 107.8 103 55.3
AUR62028456 Chenopodium quinoa HOM05D004289 ORTHO05D005141 6.4e-22 107.5 106 53.8
MD08G1244000 Malus domestica HOM05D004289 ORTHO05D005141 8.4e-22 107.1 105 56.2
CSS0038950 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 2.4e-21 105.5 104 53.8
Lsat_1_v5_gn_9_119620 Lactuca sativa HOM05D004289 ORTHO05D005141 2.4e-21 105.5 106 54.7
Potri.003G005400 Populus trichocarpa HOM05D004289 ORTHO05D005141 2.4e-21 105.5 94 62.8
Prupe.1G581300 Prunus persica HOM05D004289 ORTHO05D005141 2.4e-21 105.5 105 54.3
GSVIVG01023230001 Vitis vinifera HOM05D004289 ORTHO05D005141 2.4e-21 105.5 102 55.9
AUR62042238 Chenopodium quinoa HOM05D004289 ORTHO05D005141 4.2e-21 104.8 106 53.8
MD15G1438300 Malus domestica HOM05D004289 ORTHO05D005141 7.1e-21 104.0 105 54.3
Oeu058640.2 Olea europaea HOM05D004289 ORTHO05D005141 7.1e-21 104.0 87 62.1
BcaB03g13311 Brassica carinata HOM05D004289 ORTHO05D005141 2.1e-20 102.4 106 58.5
Sc16g0004250 Simmondsia chinensis HOM05D004289 ORTHO05D005141 2.7e-20 102.1 106 56.6
Actinidia38989 Actinidia chinensis HOM05D004289 ORTHO05D005141 3.5e-20 101.7 106 52.8
Nn5g27488 Nelumbo nucifera HOM05D004289 ORTHO05D005141 3.5e-20 101.7 106 50.9
MELO3C016488.2 Cucumis melo HOM05D004289 ORTHO05D005141 4.6e-20 101.3 93 60.2
EL10Ac6g14140 Beta vulgaris HOM05D004289 ORTHO05D005141 6.0e-20 100.9 79 65.8
CARHR009620 Cardamine hirsuta HOM05D004289 ORTHO05D005141 6.0e-20 100.9 106 55.7
Manes.10G116200 Manihot esculenta HOM05D004289 ORTHO05D005141 6.0e-20 100.9 96 60.4
Ciclev10003782m.g Citrus clementina HOM05D004289 ORTHO05D005141 1.7e-19 99.4 79 64.6
Duzib248G0764 Durio zibethinus HOM05D004289 ORTHO05D005141 1.7e-19 99.4 104 53.8
QL09p003196 Quercus lobata HOM05D004289 ORTHO05D005141 2.3e-19 99.0 105 51.4
QL09p004791 Quercus lobata HOM05D004289 ORTHO05D005141 2.3e-19 99.0 105 51.4
Sp1g08260 Schrenkiella parvula HOM05D004289 ORTHO05D005141 2.3e-19 99.0 106 55.7
THA.LOC104823700 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 2.3e-19 99.0 96 56.2
TAR381G0514 Trochodendron aralioides HOM05D004289 ORTHO05D005141 2.3e-19 99.0 103 53.4
TAR628G0462 Trochodendron aralioides HOM05D004289 ORTHO05D005141 2.3e-19 99.0 106 51.9
AT1G09645 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 3.0e-19 98.6 107 55.1
BcaC07g41867 Brassica carinata HOM05D004289 ORTHO05D005141 3.0e-19 98.6 106 54.7
C08p49340 Brassica napus HOM05D004289 ORTHO05D005141 3.0e-19 98.6 106 54.7
ECA236G0617 Erigeron canadensis HOM05D004289 ORTHO05D005141 5.1e-19 97.8 103 56.3
Aa31LG1G5340 Aethionema arabicum HOM05D004289 ORTHO05D005141 8.7e-19 97.1 101 53.5
CiPaw.04G012500 Carya illinoinensis HOM05D004289 ORTHO05D005141 8.7e-19 97.1 91 59.3
Thhalv10009166m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 8.7e-19 97.1 96 57.3
Ah.02g128340 Amaranthus hybridus HOM05D004289 ORTHO05D005141 1.1e-18 96.7 105 52.4
Lsat_1_v5_gn_5_104580 Lactuca sativa HOM05D004289 ORTHO05D005141 1.1e-18 96.7 105 52.4
vmacro19856 Vaccinium macrocarpon HOM05D004289 ORTHO05D005141 1.1e-18 96.7 79 67.1
C08p13100 Brassica napus HOM05D004289 ORTHO05D005141 1.9e-18 95.9 95 55.8
Manes.07G025900 Manihot esculenta HOM05D004289 ORTHO05D005141 1.9e-18 95.9 92 58.7
THA.LOC104816824 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 2.5e-18 95.5 96 57.3
C05p07700 Brassica napus HOM05D004289 ORTHO05D005141 3.3e-18 95.1 96 58.3
Carub.0002s0680 Capsella rubella HOM05D004289 ORTHO05D005141 4.3e-18 94.7 109 54.1
AL1G20190 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 7.3e-18 94.0 96 55.2
BraA06t23844Z Brassica rapa HOM05D004289 ORTHO05D005141 9.6e-18 93.6 103 55.3
Thhalv10023770m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 1.3e-17 93.2 99 53.5
Carub.0001s0900 Capsella rubella HOM05D004289 ORTHO05D005141 1.6e-17 92.8 104 53.8
CiPaw.03G018600 Carya illinoinensis HOM05D004289 ORTHO05D005141 1.6e-17 92.8 103 51.5
HanXRQChr06g0182751 Helianthus annuus HOM05D004289 ORTHO05D005141 2.1e-17 92.4 103 53.4
CARHR054450 Cardamine hirsuta HOM05D004289 ORTHO05D005141 2.8e-17 92.0 102 53.9
Migut.C01335 Erythranthe guttata HOM05D004289 ORTHO05D005141 2.8e-17 92.0 107 52.3
BolC8t52471H Brassica oleracea HOM05D004289 ORTHO05D005141 3.6e-17 91.7 116 50.9
TPR.G34161 Trifolium pratense HOM05D004289 ORTHO05D005141 3.6e-17 91.7 107 53.3
A06p06330 Brassica napus HOM05D004289 ORTHO05D005141 4.8e-17 91.3 87 58.6
FAN18G0926 Fragaria x ananassa HOM05D004289 ORTHO05D005141 4.8e-17 91.3 100 52.0
MD08G1216400 Malus domestica HOM05D004289 ORTHO05D005141 4.8e-17 91.3 92 58.7
GSVIVG01025943001 Vitis vinifera HOM05D004289 ORTHO05D005141 4.8e-17 91.3 101 52.5
FAN10G0807 Fragaria x ananassa HOM05D004289 ORTHO05D005141 6.2e-17 90.9 105 53.3
MBI06_g06694_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 8.1e-17 90.5 95 51.6
AL1G67510 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 1.4e-16 89.7 109 54.1
BolC8t48938H Brassica oleracea HOM05D002143 ORTHO05D002260 1.8e-16 89.4 86 54.7
BolC5t29521H Brassica oleracea HOM05D004289 ORTHO05D005141 2.4e-16 89.0 75 64.0
Sp2g05730 Schrenkiella parvula HOM05D004289 ORTHO05D005141 3.1e-16 88.6 93 53.8
Atru.chr6.550 Acer truncatum HOM05D004289 ORTHO05D005141 4.0e-16 88.2 56 76.8
ClCG08G000420 Citrullus lanatus HOM05D004289 ORTHO05D005141 4.0e-16 88.2 102 51.0
MELO3C022208.2 Cucumis melo HOM05D004289 ORTHO05D005141 4.0e-16 88.2 103 51.5
CsaV3_5G040360 Cucumis sativus L. HOM05D004289 ORTHO05D005141 4.0e-16 88.2 103 51.5
unitig_748.g7732 Utricularia gibba HOM05D004289 ORTHO05D005141 4.0e-16 88.2 103 51.5
SalBow7G0958 Salvia bowleyana HOM05D004289 ORTHO05D005141 5.3e-16 87.8 73 57.5
MD05G1210300 Malus domestica HOM05D004289 ORTHO05D005141 9.0e-16 87.0 91 56.0
BraA08t35355Z Brassica rapa HOM05D002143 ORTHO05D002260 1.2e-15 86.7 76 60.5
Aqoxy5G00854 Aquilegia oxysepala HOM05D004289 ORTHO05D005141 1.5e-15 86.3 106 47.2
AT1G57765 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 1.5e-15 86.3 108 49.1
MBI17_g24966_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 1.5e-15 86.3 69 60.9
MD15G1403500 Malus domestica HOM05D004289 ORTHO05D005141 1.5e-15 86.3 86 54.7
Sopen11g012540 Solanum pennellii HOM05D004289 ORTHO05D005141 2.0e-15 85.9 86 54.7
PGSC0003DMG400025523 Solanum tuberosum HOM05D004289 ORTHO05D005141 2.0e-15 85.9 91 52.7
ATR1136G135 Amborella trichopoda HOM05D004289 ORTHO05D005141 2.6e-15 85.5 80 57.5
Prupe.1G549500 Prunus persica HOM05D004289 ORTHO05D005141 3.4e-15 85.1 96 53.1
Peaxi162Scf00688g00334 Petunia axillaris HOM05D004289 ORTHO05D005141 5.8e-15 84.3 104 48.1
TWI14G0848 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 5.8e-15 84.3 97 47.4
unitig_32.g11200 Utricularia gibba HOM05D004289 ORTHO05D005141 5.8e-15 84.3 88 52.3
HPP92_002618 Vanilla planifolia HOM05D004289 ORTHO05D005141 5.8e-15 84.3 106 44.3
Eucgr.I02780 Eucalyptus grandis HOM05D004289 ORTHO05D005141 7.6e-15 84.0 107 48.6
PSO017G2658 Papaver somniferum HOM05D004289 ORTHO05D005141 7.6e-15 84.0 107 46.7
arahy.Tifrunner.gnm1.ann1.291MDK Arachis hypogaea HOM05D004289 ORTHO05D005141 1.3e-14 83.2 94 51.1
Medtr4g032200 Medicago truncatula HOM05D004289 ORTHO05D005141 1.3e-14 83.2 98 49.0
HPP92_002677 Vanilla planifolia HOM05D004289 ORTHO05D005141 1.7e-14 82.8 101 45.5
VMungo0540G0867 Vigna mungo HOM05D004289 ORTHO05D005141 1.7e-14 82.8 103 51.5
Cc02_g23340 Coffea canephora HOM05D004289 ORTHO05D005141 2.2e-14 82.4 106 47.2
Lj3g0023226 Lotus japonicus HOM05D004289 ORTHO05D005141 2.2e-14 82.4 97 47.4
RcHm_v2.0_Chr7g0229261 Rosa chinensis HOM05D004289 ORTHO05D005141 2.2e-14 82.4 95 47.4
FAN13G3078 Fragaria x ananassa HOM05D004289 ORTHO05D005141 2.9e-14 82.0 97 52.6
FvH4_5g28260 Fragaria vesca HOM05D004289 ORTHO05D005141 3.8e-14 81.6 56 69.6
MBI18_g30384_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 3.8e-14 81.6 80 53.8
Zm00001eb288300 Zea mays HOM05D004289 ORTHO05D005141 3.8e-14 81.6 88 51.1
Potri.019G077100 Populus trichocarpa HOM05D004289 ORTHO05D005141 4.9e-14 81.3 90 48.9
Sabra19G0088300 Salix brachista HOM05D004289 ORTHO05D005141 4.9e-14 81.3 92 48.9
FvH4_5g32580 Fragaria vesca HOM05D004289 ORTHO05D005141 8.4e-14 80.5 97 51.5
Nitab4.5_0029023g0010 Nicotiana tabacum HOM05D004289 ORTHO05D005141 1.4e-13 79.7 93 50.5
PSO170G0294 Papaver somniferum HOM05D004289 ORTHO05D005141 1.4e-13 79.7 107 44.9
HanXRQChr03g0067991 Helianthus annuus HOM05D004289 ORTHO05D005141 4.2e-13 78.2 85 48.2
RcHm_v2.0_Chr5g0063911 Rosa chinensis HOM05D004289 ORTHO05D005141 4.2e-13 78.2 74 54.1
TWI23G1156 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 7.1e-13 77.4 100 45.0
Glyma.08G237900 Glycine max HOM05D004289 ORTHO05D005141 9.3e-13 77.0 97 47.4
Phvul.006G220000 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 9.3e-13 77.0 102 47.1
QL02p100957 Quercus lobata HOM05D004289 ORTHO05D005141 9.3e-13 77.0 98 45.9
arahy.Tifrunner.gnm1.ann1.M3EZX1 Arachis hypogaea HOM05D004289 ORTHO05D005141 1.2e-12 76.6 89 50.6
Os05g0419600 Oryza sativa ssp. japonica HOM05D004289 ORTHO05D005141 1.2e-12 76.6 87 50.6
VMungo0540G1552 Vigna mungo HOM05D004289 ORTHO05D005141 1.2e-12 76.6 91 48.4
RcHm_v2.0_Chr3g0495521 Rosa chinensis HOM05D004289 ORTHO05D005141 2.1e-12 75.9 74 54.1
SalBow7G1625 Salvia bowleyana HOM05D004289 ORTHO05D005141 3.5e-12 75.1 78 55.1
Sed0006384 Sechium edule HOM05D004289 ORTHO05D005141 3.5e-12 75.1 58 67.2
THA.LOC104820335 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 3.5e-12 75.1 94 45.7
Haze_10030 Corylus avellana HOM05D004289 ORTHO05D005141 4.6e-12 74.7 72 56.9
TPR.G2097 Trifolium pratense HOM05D004289 ORTHO05D005141 4.6e-12 74.7 50 74.0
Cfa008122 Carpinus fangiana HOM05D000042 ORTHO05D000028 7.8e-12 73.9 71 54.9
Cc10_g09380 Coffea canephora HOM05D004289 ORTHO05D005141 1.0e-11 73.6 104 46.2
Psat7g226600 Pisum sativum HOM05D004289 ORTHO05D005141 1.0e-11 73.6 87 49.4
Sed0020386 Sechium edule HOM05D004289 ORTHO05D005141 1.0e-11 73.6 95 48.4
Gohir.D04G177000 Gossypium hirsutum HOM05D004289 ORTHO05D005141 1.3e-11 73.2 103 40.8
Gorai.012G169900 Gossypium raimondii HOM05D004289 ORTHO05D005141 1.3e-11 73.2 103 40.8
Oeu048223.2 Olea europaea HOM05D004289 ORTHO05D005141 1.3e-11 73.2 102 45.1
Zm00001eb349170 Zea mays HOM05D004289 ORTHO05D005141 1.3e-11 73.2 88 47.7
Phvul.011G000300 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 1.7e-11 72.8 97 45.4
Aa31LG2G11220 Aethionema arabicum HOM05D004289 ORTHO05D005141 2.3e-11 72.4 92 51.1
arahy.Tifrunner.gnm1.ann1.2Z03QX Arachis hypogaea HOM05D004289 ORTHO05D005141 2.3e-11 72.4 103 44.7
Nitab4.5_0000016g0420 Nicotiana tabacum HOM05D004289 ORTHO05D005141 2.3e-11 72.4 93 48.4
Gohir.A04G133900 Gossypium hirsutum HOM05D004289 ORTHO05D005141 3.9e-11 71.6 103 39.8
Haze_13910 Corylus avellana HOM05D002143 ORTHO05D002260 1.1e-10 70.1 84 48.8
FAN04G1595 Fragaria x ananassa HOM05D004289 ORTHO05D005141 1.1e-10 70.1 91 48.4
Actinidia01613 Actinidia chinensis HOM05D000487 ORTHO05D000405 1.9e-10 69.3 84 48.8
PGR042G0739 Punica granatum HOM05D004289 ORTHO05D005141 1.9e-10 69.3 96 49.0
Lalb_Chr15g0090801 Lupinus albus HOM05D004289 ORTHO05D005141 2.5e-10 68.9 92 47.8
FAN18G1872 Fragaria x ananassa HOM05D004289 ORTHO05D005141 7.3e-10 67.4 89 48.3
CDE08G0453 Ceratophyllum demersum HOM05D004289 ORTHO05D005141 9.6e-10 67.0 95 42.1
Glyma.16G002000 Glycine max HOM05D004289 ORTHO05D005141 2.1e-09 65.9 93 46.2
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 2.1e-09 65.9 70 45.7
Lalb_Chr18g0061091 Lupinus albus HOM05D004289 ORTHO05D005141 4.8e-09 64.7 92 43.5
CiPaw.05G003600 Carya illinoinensis HOM05D004289 ORTHO05D005141 1.1e-08 63.5 72 52.8
Glyma.12G165600 Glycine max HOM05D004289 ORTHO05D005141 9.0e-08 60.5 93 46.2
DCAR_001703 Daucus carota HOM05D004289 ORTHO05D005141 1.2e-07 60.1 103 39.8
PSO339G1720 Papaver somniferum HOM05D004061 ORTHO05D004693 4.5e-07 58.2 58 56.9
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 1.7e-06 56.2 68 44.1
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 1.7e-06 56.2 68 44.1
Actinidia05286 Actinidia chinensis HOM05D004061 ORTHO05D004693 2.9e-06 55.5 75 42.7
PSO384G5009 Papaver somniferum HOM05D004061 ORTHO05D004693 2.9e-06 55.5 58 55.2
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 3.8e-06 55.1 90 37.8
Lj1g0024664 Lotus japonicus HOM05D004061 ORTHO05D004693 3.8e-06 55.1 64 48.4
Nitab4.5_0000202g0310 Nicotiana tabacum HOM05D004061 ORTHO05D004693 4.9e-06 54.7 74 37.8
Sopen01g045750 Solanum pennellii HOM05D004289 ORTHO05D005141 4.9e-06 54.7 106 34.9
SalBow6G5095 Salvia bowleyana HOM05D004289 ORTHO05D005141 6.4e-06 54.3 105 39.0
Zm00001eb346430 Zea mays HOM05D004061 ORTHO05D004693 6.4e-06 54.3 76 44.7
EL10Ac7g17278 Beta vulgaris HOM05D004061 ORTHO05D004693 8.4e-06 53.9 66 39.4
Carub.0005s2006 Capsella rubella HOM05D004061 ORTHO05D004693 8.4e-06 53.9 88 34.1
AUR62041005 Chenopodium quinoa HOM05D004061 ORTHO05D004693 8.4e-06 53.9 66 47.0


User provided reference genes

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