Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold130G34359 Striga asiatica HOM05D005299 ORTHO05D006621 3.7e-210 734.6 354 100.0
MSTRG.15054 Avicennia marina HOM05D005299 ORTHO05D006621 4.0e-156 555.1 351 75.2
Migut.M00515 Erythranthe guttata HOM05D005299 ORTHO05D006621 4.9e-154 548.1 358 72.9
SalBow8G4073 Salvia bowleyana HOM05D005299 ORTHO05D006621 2.5e-150 535.8 346 72.0
Oeu006146.1 Olea europaea HOM05D005299 ORTHO05D006621 6.2e-149 531.2 349 71.1
CSS0023426 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 2.3e-135 486.1 349 65.0
CAN.G585.55 Capsicum annuum HOM05D005299 ORTHO05D006621 7.6e-131 471.1 349 62.5
Cc05_g09280 Coffea canephora HOM05D005299 ORTHO05D006621 4.2e-129 465.3 349 61.9
Ciclev10031926m.g Citrus clementina HOM05D005299 ORTHO05D006621 1.6e-128 463.4 349 61.9
Sopen07g029300 Solanum pennellii HOM05D005299 ORTHO05D006621 7.8e-128 461.1 349 61.3
Hma1.2p1_0036F.1_g023590 Hydrangea macrophylla HOM05D005299 ORTHO05D006621 1.0e-127 460.7 349 59.3
Nitab4.5_0001675g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 1.0e-127 460.7 340 62.6
Lj1P624T16 Lonicera japonica HOM05D005299 ORTHO05D006621 1.9e-126 456.4 334 63.5
Nitab4.5_0001402g0040 Nicotiana tabacum HOM05D005299 ORTHO05D006621 1.6e-125 453.4 352 57.4
QL08p043914 Quercus lobata HOM05D005299 ORTHO05D006621 2.1e-125 453.0 322 63.4
Solyc07g055940.3 Solanum lycopersicum HOM05D005299 ORTHO05D006621 6.2e-125 451.4 340 61.2
Peaxi162Scf00154g00511 Petunia axillaris HOM05D005299 ORTHO05D006621 1.1e-124 450.7 317 65.0
Rhsim06G0118500 Rhododendron simsii HOM05D005299 ORTHO05D006621 1.4e-124 450.3 347 58.8
Haze_13488 Corylus avellana HOM05D005299 ORTHO05D006621 2.4e-124 449.5 351 58.4
Atru.chr11.1755 Acer truncatum HOM05D005299 ORTHO05D006621 5.8e-123 444.9 349 60.2
Prupe.3G170900 Prunus persica HOM05D005299 ORTHO05D006621 9.9e-123 444.1 350 58.9
Cfa022915 Carpinus fangiana HOM05D005299 ORTHO05D006621 4.9e-122 441.8 349 57.3
RcHm_v2.0_Chr2g0151151 Rosa chinensis HOM05D005299 ORTHO05D006621 4.9e-122 441.8 350 58.9
Thecc.01G160700 Theobroma cacao HOM05D005299 ORTHO05D006621 1.9e-121 439.9 324 61.7
PGSC0003DMG400017296 Solanum tuberosum HOM05D005299 ORTHO05D006621 2.4e-121 439.5 324 61.7
CAN.G1191.5 Capsicum annuum HOM05D005299 ORTHO05D006621 9.3e-121 437.6 338 59.2
unitig_747.g21613 Utricularia gibba HOM05D005299 ORTHO05D006621 9.3e-121 437.6 348 59.2
Gohir.A05G378300 Gossypium hirsutum HOM05D005299 ORTHO05D006621 1.6e-120 436.8 332 60.5
Gorai.012G042000 Gossypium raimondii HOM05D005299 ORTHO05D006621 3.5e-120 435.6 332 60.2
Glyma.14G027500 Glycine max HOM05D005299 ORTHO05D006621 4.6e-120 435.3 339 59.3
Eucgr.K01197 Eucalyptus grandis HOM05D005299 ORTHO05D006621 6.0e-120 434.9 351 59.0
COL.COLO4_33736 Corchorus olitorius HOM05D005299 ORTHO05D006621 1.0e-119 434.1 324 61.7
FvH4_6g38090 Fragaria vesca HOM05D005299 ORTHO05D006621 1.0e-119 434.1 350 58.9
FAN14G2921 Fragaria x ananassa HOM05D005299 ORTHO05D006621 1.0e-119 434.1 350 58.9
FAN02G4296 Fragaria x ananassa HOM05D005299 ORTHO05D006621 1.3e-119 433.7 350 58.9
Gohir.D04G037200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 3.0e-119 432.6 332 59.6
FAN05G0697 Fragaria x ananassa HOM05D005299 ORTHO05D006621 5.1e-119 431.8 350 58.6
Phvul.008G190800 Phaseolus vulgaris HOM05D005299 ORTHO05D006621 5.1e-119 431.8 339 58.4
Cpa.g.sc50.76 Carica papaya HOM05D005299 ORTHO05D006621 6.7e-119 431.4 340 58.8
LjContig00310g0013825 Lotus japonicus HOM05D005299 ORTHO05D006621 8.7e-119 431.0 337 57.9
GSVIVG01000796001 Vitis vinifera HOM05D005299 ORTHO05D006621 2.8e-117 426.0 316 63.0
ClCG02G018370 Citrullus lanatus HOM05D005299 ORTHO05D006621 3.7e-117 425.6 329 60.2
Duzib187G1515 Durio zibethinus HOM05D005299 ORTHO05D006621 3.7e-117 425.6 349 57.9
MD09G1154100 Malus domestica HOM05D005299 ORTHO05D006621 4.8e-117 425.2 351 56.7
MBI07_g30205_MAGBIO Magnolia biondii HOM05D005299 ORTHO05D006621 2.4e-116 422.9 352 59.1
DCAR_009793 Daucus carota HOM05D005299 ORTHO05D006621 4.0e-116 422.2 349 55.3
PGR142G4033 Punica granatum HOM05D005299 ORTHO05D006621 4.0e-116 422.2 329 59.0
Potri.002G168500 Populus trichocarpa HOM05D005299 ORTHO05D006621 1.2e-115 420.6 334 58.1
CANSAT64G0352 Cannabis sativa HOM05D005299 ORTHO05D006621 2.0e-115 419.9 349 57.3
MELO3C019690.2 Cucumis melo HOM05D005299 ORTHO05D006621 2.0e-115 419.9 335 58.8
Gorai.012G042100 Gossypium raimondii HOM05D005299 ORTHO05D006621 2.6e-115 419.5 329 59.6
Lsat_1_v5_gn_8_32101 Lactuca sativa HOM05D005299 ORTHO05D006621 3.4e-115 419.1 346 58.7
PSO675G1896 Papaver somniferum HOM05D005299 ORTHO05D006621 3.4e-115 419.1 344 58.7
PSO541G3070 Papaver somniferum HOM05D005299 ORTHO05D006621 4.5e-115 418.7 344 58.7
VMungo0647G0660 Vigna mungo HOM05D005299 ORTHO05D006621 4.5e-115 418.7 323 57.3
Gohir.A05G378200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 5.8e-115 418.3 329 60.2
Manes.01G128400 Manihot esculenta HOM05D005299 ORTHO05D006621 7.6e-115 417.9 328 60.4
Medtr5g091790 Medicago truncatula HOM05D005299 ORTHO05D006621 9.9e-115 417.5 296 63.2
CsaV3_6G015800 Cucumis sativus L. HOM05D005299 ORTHO05D006621 1.3e-114 417.2 328 58.5
Dinv32183 Davidia involucrata HOM05D005299 ORTHO05D006621 3.8e-114 415.6 300 63.3
Psat2g014680 Pisum sativum HOM05D005299 ORTHO05D006621 4.9e-114 415.2 351 57.0
Sabra02G0143400 Salix brachista HOM05D005299 ORTHO05D006621 4.9e-114 415.2 329 58.7
TPR.G12682 Trifolium pratense HOM05D005299 ORTHO05D006621 2.4e-113 412.9 350 55.4
Sed0016784 Sechium edule HOM05D005299 ORTHO05D006621 3.2e-113 412.5 330 58.5
HanXRQChr12g0369651 Helianthus annuus HOM05D005299 ORTHO05D006621 4.2e-113 412.1 343 56.6
Ca_06288_v3 Cicer arietinum L. HOM05D005299 ORTHO05D006621 5.5e-113 411.8 295 63.1
Aqoxy4G00177 Aquilegia oxysepala HOM05D005299 ORTHO05D006621 9.3e-113 411.0 349 56.4
Lalb_Chr04g0248721 Lupinus albus HOM05D005299 ORTHO05D006621 7.9e-112 407.9 296 61.5
CiPaw.04G135600 Carya illinoinensis HOM05D005299 ORTHO05D006621 5.1e-111 405.2 351 54.1
Glyma.02G287500 Glycine max HOM05D005299 ORTHO05D006621 8.7e-111 404.4 341 56.9
TAR624G0522 Trochodendron aralioides HOM05D005299 ORTHO05D006621 1.9e-110 403.3 348 54.9
arahy.Tifrunner.gnm1.ann1.L8S1IT Arachis hypogaea HOM05D005299 ORTHO05D006621 2.5e-110 402.9 310 58.1
arahy.Tifrunner.gnm1.ann1.W6YWPQ Arachis hypogaea HOM05D005299 ORTHO05D006621 5.6e-110 401.7 310 58.1
Nn3g20966 Nelumbo nucifera HOM05D005299 ORTHO05D006621 4.8e-109 398.7 338 55.3
ATR0737G056 Amborella trichopoda HOM05D005299 ORTHO05D006621 6.2e-109 398.3 349 52.7
COL.COLO4_33735 Corchorus olitorius HOM05D005299 ORTHO05D006621 3.4e-107 392.5 280 62.5
Nitab4.5_0013539g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 4.5e-107 392.1 337 55.5
Sc04g0008260 Simmondsia chinensis HOM05D005299 ORTHO05D006621 2.7e-104 382.9 350 49.4
THA.LOC104803188 Tarenaya hassleriana HOM05D005299 ORTHO05D006621 6.7e-103 378.3 350 54.3
CARHR169190 Cardamine hirsuta HOM05D005299 ORTHO05D006621 1.2e-99 367.5 341 51.6
Peaxi162Scf00035g00313 Petunia axillaris HOM05D005299 ORTHO05D006621 1.2e-99 367.5 294 57.1
AT3G58800 Arabidopsis thaliana HOM05D005299 ORTHO05D006621 1.5e-99 367.1 342 52.9
SEGI_33032 Sequoiadendron giganteum HOM05D005299 ORTHO05D006621 2.6e-99 366.3 332 51.8
Carub.0005s2558 Capsella rubella HOM05D005299 ORTHO05D006621 6.5e-98 361.7 343 51.9
Aa31LG10G13380 Aethionema arabicum HOM05D005299 ORTHO05D006621 2.5e-97 359.8 288 55.6
AL5G40590 Arabidopsis lyrata HOM05D005299 ORTHO05D006621 2.5e-97 359.8 341 51.6
EL10Ac6g14080 Beta vulgaris HOM05D005299 ORTHO05D006621 4.2e-97 359.0 354 48.9
BcaC07g40297 Brassica carinata HOM05D005299 ORTHO05D006621 7.2e-97 358.2 323 52.9
C08p34130 Brassica napus HOM05D005299 ORTHO05D006621 9.4e-97 357.8 323 52.9
BolC8t51012H Brassica oleracea HOM05D005299 ORTHO05D006621 9.4e-97 357.8 324 52.5
HPP92_007777 Vanilla planifolia HOM05D005299 ORTHO05D006621 3.6e-96 355.9 293 55.6
Sp5g04040 Schrenkiella parvula HOM05D005299 ORTHO05D006621 4.6e-96 355.5 327 52.0
AUR62042721 Chenopodium quinoa HOM05D005299 ORTHO05D006621 1.0e-95 354.4 349 46.4
Thhalv10006079m.g Eutrema salsugineum HOM05D005299 ORTHO05D006621 3.0e-95 352.8 336 52.1
A09p51350 Brassica napus HOM05D005299 ORTHO05D006621 3.9e-95 352.4 326 52.1
BraA09t40576Z Brassica rapa HOM05D005299 ORTHO05D006621 3.9e-95 352.4 326 52.1
Ah.01g004630 Amaranthus hybridus HOM05D005299 ORTHO05D006621 5.1e-95 352.1 349 49.9
BcaC07g40228 Brassica carinata HOM05D005299 ORTHO05D006621 1.5e-94 350.5 328 51.8
AUR62028463 Chenopodium quinoa HOM05D005299 ORTHO05D006621 2.5e-94 349.7 352 47.2
CSS0024030 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 9.7e-94 347.8 336 53.0
Hund04227 Selenicereus undatus HOM05D005299 ORTHO05D006621 1.7e-93 347.1 285 54.7
ECA233G0136 Erigeron canadensis HOM05D005299 ORTHO05D001423 1.4e-89 334.0 252 62.7
SHI07041 Sapria himalayana HOM05D005299 ORTHO05D006621 1.0e-87 327.8 311 49.5
Nitab4.5_0002027g0150 Nicotiana tabacum HOM05D005299 ORTHO05D006621 9.4e-81 304.7 220 62.7
SMO143G0231 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 1.1e-76 291.2 323 44.3
Zm00001eb204700 Zea mays HOM05D005299 ORTHO05D006621 5.3e-76 288.9 300 47.3
Os02g0230200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 2.6e-75 286.6 297 47.1
HPP92_007800 Vanilla planifolia HOM05D005299 ORTHO05D006621 6.5e-74 282.0 258 53.1
Mapoly0101s0004 Marchantia polymorpha HOM05D005299 ORTHO05D006621 7.2e-73 278.5 293 44.7
Os01g0748200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 1.2e-72 277.7 286 46.5
Zm00001eb153130 Zea mays HOM05D005299 ORTHO05D006621 2.3e-71 273.5 288 44.8
Pp3c3_20150 Physcomitrium patens HOM05D005299 ORTHO05D006621 2.1e-64 250.4 345 39.1
HanXRQChr12g0369671 Helianthus annuus HOM05D005299 ORTHO05D006621 1.5e-62 244.2 190 59.5
MD17G1140700 Malus domestica HOM05D005299 ORTHO05D006621 2.4e-60 236.9 315 39.7
AagrBONN_evm.TU.Sc2ySwM_117.611 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.0e-51 207.2 321 35.8
AagrBONN_evm.TU.Sc2ySwM_362.595 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.0e-51 207.2 311 38.9
AagrBONN_evm.TU.Sc2ySwM_344.2434 Anthoceros agrestis HOM05D005299 ORTHO05D006621 6.6e-50 202.2 290 37.6
Pp3c1_7220 Physcomitrium patens HOM05D005299 ORTHO05D006621 2.1e-48 197.2 282 36.9
AagrBONN_evm.TU.Sc2ySwM_228.4866 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.8e-47 194.1 316 35.1
AagrBONN_evm.TU.Sc2ySwM_344.3512 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.2e-46 191.4 291 37.1
AagrBONN_evm.TU.Sc2ySwM_344.1994 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.2e-45 187.2 309 33.3
Gohir.D04G037301 Gossypium hirsutum HOM05D005299 ORTHO05D006621 6.4e-45 185.7 154 55.8
SMO356G0525 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 2.0e-43 180.6 283 36.0
AagrBONN_evm.TU.Sc2ySwM_228.4947 Anthoceros agrestis HOM05D005299 ORTHO05D006621 4.6e-43 179.5 294 35.4
AagrBONN_evm.TU.Sc2ySwM_362.1230 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.0e-42 178.3 259 37.8
AagrBONN_evm.TU.Sc2ySwM_228.5465 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.3e-42 177.2 304 33.6
AagrBONN_evm.TU.Sc2ySwM_117.3041__3042 Anthoceros agrestis HOM05D005299 ORTHO05D006621 6.6e-42 175.6 306 33.3
AagrBONN_evm.TU.Sc2ySwM_362.647 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.1e-41 174.9 348 33.0
AagrBONN_evm.TU.Sc2ySwM_228.2643 Anthoceros agrestis HOM05D005299 ORTHO05D006621 9.5e-41 171.8 299 34.8
AagrBONN_evm.TU.Sc2ySwM_368.2564 Anthoceros agrestis HOM05D005299 ORTHO05D006621 4.4e-38 162.9 302 33.1
Cre16.g692650 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 3.7e-37 159.8 325 32.6
SMO304G0008 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 6.4e-37 159.1 293 32.4
AagrBONN_evm.TU.Sc2ySwM_362.723 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.1e-36 158.3 235 36.6
AagrBONN_evm.TU.Sc2ySwM_344.988 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.3e-31 140.6 290 30.0
AagrBONN_evm.TU.Sc2ySwM_368.682 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.1e-31 140.2 290 29.7
AagrBONN_evm.TU.Sc2ySwM_368.683 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.2e-29 134.0 290 29.0
AagrBONN_evm.TU.Sc2ySwM_368.684 Anthoceros agrestis HOM05D005299 ORTHO05D006621 4.0e-23 113.2 270 28.1
MCO16G314 Micromonas commoda HOM05D005299 ORTHO05D006621 3.4e-22 110.2 269 29.4
CBR_g37320 Chara braunii HOM05D000019 ORTHO05D000002 3.6e-16 90.1 63 58.7
Cre04.g231712 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 6.4e-13 79.3 155 32.3
ECA233G3003 Erigeron canadensis HOM05D000038 ORTHO05D000423 3.2e-12 77.0 96 41.7
Cre04.g231810 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 7.1e-12 75.9 74 44.6
HanXRQChr17g0539561 Helianthus annuus HOM05D005299 ORTHO05D006621 2.3e-10 70.9 42 61.9


User provided reference genes

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