Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold130G34351 Striga asiatica HOM05D006022 ORTHO05D007649 1.2e-124 449.9 235 100.0
SGA_v2.0_scaffold83G26437 Striga asiatica HOM05D000006 ORTHO05D000001 5.3e-40 168.7 136 66.9
SGA_v2.0_scaffold408G51088 Striga asiatica HOM05D006022 ORTHO05D007649 1.5e-34 150.6 131 62.6
SGA_v2.0_scaffold49G18107 Striga asiatica HOM05D006022 ORTHO05D007649 6.3e-33 145.2 91 74.7
SGA_v2.0_scaffold169G38721 Striga asiatica HOM05D002942 ORTHO05D003270 5.9e-31 138.7 125 58.4
Migut.E01259 Erythranthe guttata HOM05D006022 ORTHO05D007649 1.1e-24 117.9 129 49.6
CSS0021468 Camellia sinensis var. sinensis HOM05D006022 ORTHO05D007649 4.1e-24 115.9 121 50.4
vmacro11345 Vaccinium macrocarpon HOM05D006022 ORTHO05D007649 1.6e-23 114.0 125 48.8
Dinv38822 Davidia involucrata HOM05D006022 ORTHO05D007406 3.5e-23 112.8 125 47.2
Prupe.5G122300 Prunus persica HOM05D006022 ORTHO05D007649 1.5e-21 107.5 125 45.6
GSVIVG01019556001 Vitis vinifera HOM05D006022 ORTHO05D007649 1.5e-21 107.5 116 48.3
Oeu009974.1 Olea europaea HOM05D006022 ORTHO05D007649 1.9e-21 107.1 124 46.8
Atru.chr9.1963 Acer truncatum HOM05D006022 ORTHO05D007649 2.5e-21 106.7 124 46.0
Actinidia22171 Actinidia chinensis HOM05D006022 ORTHO05D007649 3.3e-21 106.3 125 44.8
Ciclev10018527m.g Citrus clementina HOM05D006022 ORTHO05D007649 3.3e-21 106.3 183 36.6
QL02p030100 Quercus lobata HOM05D006022 ORTHO05D007649 3.3e-21 106.3 121 46.3
Rhsim02G0245100 Rhododendron simsii HOM05D006022 ORTHO05D007649 4.3e-21 105.9 120 47.5
RhsimUnG0007600 Rhododendron simsii HOM05D006022 ORTHO05D007649 4.3e-21 105.9 120 47.5
MD14G1130300 Malus domestica HOM05D006022 ORTHO05D007649 5.6e-21 105.5 124 45.2
Sc22g0004930 Simmondsia chinensis HOM05D006022 ORTHO05D007649 5.6e-21 105.5 173 39.3
AUR62019856 Chenopodium quinoa HOM05D006022 ORTHO05D007649 9.5e-21 104.8 116 47.4
Lsat_1_v5_gn_6_8380 Lactuca sativa HOM05D006022 ORTHO05D007649 9.5e-21 104.8 118 46.6
Cc08_g16230 Coffea canephora HOM05D006022 ORTHO05D007649 1.2e-20 104.4 193 36.3
CiPaw.12G081600 Carya illinoinensis HOM05D006022 ORTHO05D007649 1.6e-20 104.0 121 44.6
AUR62010858 Chenopodium quinoa HOM05D006022 ORTHO05D007649 2.1e-20 103.6 116 47.4
CAN.G390.10 Capsicum annuum HOM05D006022 ORTHO05D007649 2.8e-20 103.2 119 45.4
Cfa011987 Carpinus fangiana HOM05D006022 ORTHO05D007649 3.6e-20 102.8 121 45.5
Haze_09085 Corylus avellana HOM05D006022 ORTHO05D007649 4.7e-20 102.4 121 45.5
MD06G1109300 Malus domestica HOM05D006022 ORTHO05D007649 4.7e-20 102.4 125 44.0
Potri.001G089900 Populus trichocarpa HOM05D006022 ORTHO05D007649 8.0e-20 101.7 97 49.5
Hma1.2p1_0359F.1_g135140 Hydrangea macrophylla HOM05D006022 ORTHO05D007649 1.4e-19 100.9 65 63.1
Sabra01G0066300 Salix brachista HOM05D006022 ORTHO05D007649 1.4e-19 100.9 97 49.5
Medtr8g099585 Medicago truncatula HOM05D006022 ORTHO05D007649 1.8e-19 100.5 120 43.3
Solyc12g055910.3 Solanum lycopersicum HOM05D006022 ORTHO05D007649 1.8e-19 100.5 119 42.9
Sopen12g024380 Solanum pennellii HOM05D006022 ORTHO05D007649 1.8e-19 100.5 119 42.9
EL10Ac5g12933 Beta vulgaris HOM05D006022 ORTHO05D007649 2.3e-19 100.1 113 47.8
Glyma.08G023800 Glycine max HOM05D006022 ORTHO05D007649 2.3e-19 100.1 126 42.1
Manes.01G050200 Manihot esculenta HOM05D006022 ORTHO05D007649 2.3e-19 100.1 125 43.2
MELO3C005765.2 Cucumis melo HOM05D006022 ORTHO05D007649 3.0e-19 99.8 119 45.4
CsaV3_5G001870 Cucumis sativus L. HOM05D006022 ORTHO05D007649 3.0e-19 99.8 119 45.4
Glyma.05G217800 Glycine max HOM05D006022 ORTHO05D007649 3.0e-19 99.8 124 42.7
Peaxi162Scf00117g00919 Petunia axillaris HOM05D006022 ORTHO05D007649 4.0e-19 99.4 119 44.5
Nitab4.5_0004010g0010 Nicotiana tabacum HOM05D006022 ORTHO05D007649 5.2e-19 99.0 119 43.7
Psat7g023280 Pisum sativum HOM05D006022 ORTHO05D007649 5.2e-19 99.0 125 42.4
Lalb_Chr05g0224031 Lupinus albus HOM05D006022 ORTHO05D007649 6.8e-19 98.6 125 42.4
PSO170G1024 Papaver somniferum HOM05D006022 ORTHO05D007649 6.8e-19 98.6 114 45.6
FAN04G2854 Fragaria x ananassa HOM05D006022 ORTHO05D007649 8.9e-19 98.2 66 59.1
VMungo0251G1998 Vigna mungo HOM05D006022 ORTHO05D007649 1.5e-18 97.4 124 41.1
MSTRG.1801 Avicennia marina HOM05D006022 ORTHO05D007649 2.0e-18 97.1 125 42.4
CANSAT21G0687 Cannabis sativa HOM05D006022 ORTHO05D007649 2.0e-18 97.1 125 40.0
ECA233G0648 Erigeron canadensis HOM05D006022 ORTHO05D007649 2.6e-18 96.7 122 43.4
FAN18G3678 Fragaria x ananassa HOM05D006022 ORTHO05D007649 3.4e-18 96.3 66 59.1
Duzib084G0652 Durio zibethinus HOM05D006022 ORTHO05D007649 4.4e-18 95.9 118 42.4
Nn1g00246 Nelumbo nucifera HOM05D006022 ORTHO05D007649 4.4e-18 95.9 124 44.4
Sed0008879 Sechium edule HOM05D006022 ORTHO05D007649 4.4e-18 95.9 120 42.5
Thecc.03G300300 Theobroma cacao HOM05D006022 ORTHO05D007649 4.4e-18 95.9 124 41.9
ATR0602G083 Amborella trichopoda HOM05D006022 ORTHO05D007649 5.7e-18 95.5 121 43.0
RcHm_v2.0_Chr7g0194241 Rosa chinensis HOM05D006022 ORTHO05D007649 5.7e-18 95.5 126 38.1
SEGI_16880 Sequoiadendron giganteum HOM05D006022 ORTHO05D007649 5.7e-18 95.5 123 42.3
Aqoxy5G04291 Aquilegia oxysepala HOM05D006022 ORTHO05D007649 7.5e-18 95.1 119 42.9
FvH4_5g04850 Fragaria vesca HOM05D006022 ORTHO05D007649 7.5e-18 95.1 76 52.6
FAN18G0793 Fragaria x ananassa HOM05D006022 ORTHO05D007649 7.5e-18 95.1 76 52.6
HanXRQChr10g0316931 Helianthus annuus HOM05D006022 ORTHO05D007649 7.5e-18 95.1 114 45.6
Hund14211 Selenicereus undatus HOM05D006022 ORTHO05D007649 1.7e-17 94.0 104 49.0
Ca_17472_v3 Cicer arietinum L. HOM05D006022 ORTHO05D007649 2.2e-17 93.6 123 41.5
Gohir.A08G112400 Gossypium hirsutum HOM05D006022 ORTHO05D007649 2.2e-17 93.6 123 40.7
Gohir.D08G125400 Gossypium hirsutum HOM05D006022 ORTHO05D007649 2.2e-17 93.6 123 40.7
Gorai.004G132300 Gossypium raimondii HOM05D006022 ORTHO05D007649 2.2e-17 93.6 123 40.7
Hund11381 Selenicereus undatus HOM05D006022 ORTHO05D007649 2.9e-17 93.2 66 60.6
TPR.G3389 Trifolium pratense HOM05D006022 ORTHO05D007649 2.9e-17 93.2 121 41.3
Phvul.002G299600 Phaseolus vulgaris HOM05D006022 ORTHO05D007649 4.9e-17 92.4 124 39.5
MBI07_g39841_MAGBIO Magnolia biondii HOM05D006022 ORTHO05D007649 8.3e-17 91.7 121 41.3
PGR042G3794 Punica granatum HOM05D006022 ORTHO05D007649 1.1e-16 91.3 116 42.2
SGA_v2.0_scaffold111G31401 Striga asiatica HOM05D006022 ORTHO05D007649 1.4e-16 90.9 55 70.9
unitig_26.g9566 Utricularia gibba HOM05D006022 ORTHO05D007649 2.4e-16 90.1 62 61.3
TWI81G0375 Tripterygium wilfordii HOM05D006022 ORTHO05D007649 3.2e-16 89.7 66 56.1
Lj4g0024036 Lotus japonicus HOM05D006022 ORTHO05D007649 4.1e-16 89.4 125 39.2
Psat4g095080 Pisum sativum HOM05D006022 ORTHO05D007649 1.6e-15 87.4 85 50.6
THA.LOC104807002 Tarenaya hassleriana HOM05D006022 ORTHO05D007649 2.7e-15 86.7 125 37.6
Ah.12g052650 Amaranthus hybridus HOM05D006022 ORTHO05D007649 4.6e-15 85.9 63 60.3
AT4G10930 Arabidopsis thaliana HOM05D006022 ORTHO05D007649 2.5e-13 80.1 63 55.6
Sp6g06550 Schrenkiella parvula HOM05D006022 ORTHO05D007649 1.6e-12 77.4 119 38.7
A03p29210 Brassica napus HOM05D006022 ORTHO05D007649 2.8e-12 76.6 119 38.7
BraA03t12116Z Brassica rapa HOM05D006022 ORTHO05D007649 2.8e-12 76.6 119 38.7
BcaB01g02727 Brassica carinata HOM05D006022 ORTHO05D007649 3.6e-12 76.3 119 38.7
BcaC01g04650 Brassica carinata HOM05D006022 ORTHO05D007649 3.6e-12 76.3 119 38.7
C03p35290 Brassica napus HOM05D006022 ORTHO05D007649 3.6e-12 76.3 119 38.7
BolC3t15840H Brassica oleracea HOM05D006022 ORTHO05D007649 3.6e-12 76.3 119 38.7
ClCG01G001730 Citrullus lanatus HOM05D006022 ORTHO05D007649 3.6e-12 76.3 119 38.7
Lj2A165T43 Lonicera japonica HOM05D006022 ORTHO05D007649 4.7e-12 75.9 117 41.9
Ah.07g197550 Amaranthus hybridus HOM05D006022 ORTHO05D007649 6.2e-12 75.5 158 32.9
arahy.Tifrunner.gnm1.ann1.MN1JRI Arachis hypogaea HOM05D006022 ORTHO05D007649 1.0e-11 74.7 101 39.6
Carub.0006s2968 Capsella rubella HOM05D006022 ORTHO05D007649 1.8e-11 73.9 63 50.8
Zm00001eb209080 Zea mays HOM05D006022 ORTHO05D007649 4.0e-11 72.8 199 28.6
AL6G45030 Arabidopsis lyrata HOM05D006022 ORTHO05D007649 8.9e-11 71.6 61 49.2
AagrBONN_evm.TU.Sc2ySwM_228.3550 Anthoceros agrestis HOM05D006022 ORTHO05D007649 2.0e-10 70.5 63 49.2
TAR375G1078 Trochodendron aralioides HOM05D006022 ORTHO05D007649 2.6e-10 70.1 111 37.8
Pp3c6_15100 Physcomitrium patens HOM05D006022 ORTHO05D007649 4.4e-10 69.3 70 50.0
SMO364G0157 Selaginella moellendorffii HOM05D003349 ORTHO05D003898 9.8e-10 68.2 79 41.8
SGA_v2.0_scaffold185G40083 Striga asiatica HOM05D002303 ORTHO05D012836 6.4e-09 65.5 44 77.3
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 3.2e-08 63.2 38 78.9
Nitab4.5_0004515g0060 Nicotiana tabacum HOM05D006022 ORTHO05D007649 2.7e-07 60.1 43 60.5
Mapoly0002s0107 Marchantia polymorpha HOM05D006022 ORTHO05D007649 3.9e-06 56.2 151 28.5


User provided reference genes

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