Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold130G34343 Striga asiatica HOM05D004118 ORTHO05D004686 3.4e-290 1001.1 564 100.0
SGA_v2.0_scaffold70G23697 Striga asiatica HOM05D004118 ORTHO05D004686 2.3e-113 413.7 623 50.1
MSTRG.12889 Avicennia marina HOM05D004118 ORTHO05D004686 4.5e-69 266.5 716 35.5
MSTRG.6813 Avicennia marina HOM05D004118 ORTHO05D004686 3.2e-59 233.8 745 34.6
SalBow8G5405 Salvia bowleyana HOM05D004118 ORTHO05D004686 3.0e-57 227.3 706 37.5
Migut.M00768 Erythranthe guttata HOM05D004118 ORTHO05D004686 1.9e-51 208.0 743 36.2
MSTRG.15246 Avicennia marina HOM05D004118 ORTHO05D004686 8.0e-50 202.6 713 32.7
CAN.G162.27 Capsicum annuum HOM05D004118 ORTHO05D004686 8.0e-50 202.6 707 32.5
Nitab4.5_0011677g0020 Nicotiana tabacum HOM05D004118 ORTHO05D004686 8.9e-49 199.1 721 32.6
SGA_v2.0_scaffold73G24222 Striga asiatica HOM05D004118 ORTHO05D004686 2.0e-48 198.0 761 33.2
PGR083G2344 Punica granatum HOM05D004118 ORTHO05D004686 5.7e-48 196.4 691 33.1
Nitab4.5_0000246g0070 Nicotiana tabacum HOM05D004118 ORTHO05D004686 2.2e-47 194.5 718 31.8
Solyc07g062730.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 9.2e-46 189.1 710 31.5
PGSC0003DMG400012399 Solanum tuberosum HOM05D004118 ORTHO05D004686 2.9e-44 184.1 727 31.9
Thhalv10020211m.g Eutrema salsugineum HOM05D004118 ORTHO05D004686 3.9e-44 183.7 610 34.9
HanXRQChr03g0070941 Helianthus annuus HOM05D004118 ORTHO05D004686 8.6e-44 182.6 620 33.1
Sopen07g030960 Solanum pennellii HOM05D004118 ORTHO05D004686 2.5e-43 181.0 721 30.8
Aa31LG8G2310 Aethionema arabicum HOM05D004118 ORTHO05D004686 2.1e-42 177.9 606 35.6
Sp3g13300 Schrenkiella parvula HOM05D004118 ORTHO05D004686 2.8e-42 177.6 607 36.4
unitig_37.g12565 Utricularia gibba HOM05D004118 ORTHO05D004686 8.9e-41 172.6 663 34.7
Oeu019296.1 Olea europaea HOM05D004118 ORTHO05D004686 1.2e-40 172.2 710 32.5
ECA240G2123 Erigeron canadensis HOM05D004118 ORTHO05D004686 7.5e-40 169.5 637 31.1
QL08p023555 Quercus lobata HOM05D004118 ORTHO05D004686 7.5e-40 169.5 726 31.4
ECA236G3195 Erigeron canadensis HOM05D004118 ORTHO05D004686 2.2e-39 167.9 631 32.3
Actinidia07500 Actinidia chinensis HOM05D004118 ORTHO05D004686 2.9e-39 167.5 643 33.6
THA.LOC104810455 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 3.7e-39 167.2 638 32.6
Peaxi162Scf00000g00285 Petunia axillaris HOM05D004118 ORTHO05D004686 8.3e-39 166.0 652 30.4
Nitab4.5_0000332g0190 Nicotiana tabacum HOM05D004118 ORTHO05D004686 1.4e-38 165.2 684 32.0
FvH4_3g19150 Fragaria vesca HOM05D004118 ORTHO05D004686 1.9e-38 164.9 736 30.7
FAN11G3070 Fragaria x ananassa HOM05D004118 ORTHO05D004686 2.4e-38 164.5 736 30.2
Peaxi162Scf00069g00197 Petunia axillaris HOM05D004118 ORTHO05D004686 4.1e-38 163.7 676 33.0
FAN25G0990 Fragaria x ananassa HOM05D004118 ORTHO05D004686 7.0e-38 162.9 701 30.1
Manes.15G090200 Manihot esculenta HOM05D004118 ORTHO05D004686 1.2e-37 162.2 715 30.8
PGSC0003DMG400015371 Solanum tuberosum HOM05D004118 ORTHO05D004686 1.2e-37 162.2 690 31.7
MD03G1236100 Malus domestica HOM05D004118 ORTHO05D004686 1.6e-37 161.8 736 30.7
TWI39G0897 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 2.7e-37 161.0 719 29.1
Lsat_1_v5_gn_9_98421 Lactuca sativa HOM05D004118 ORTHO05D004686 3.5e-37 160.6 528 33.9
Duzib213G0890 Durio zibethinus HOM05D004118 ORTHO05D004686 4.6e-37 160.2 713 31.0
Ah.06g194460 Amaranthus hybridus HOM05D004118 ORTHO05D004686 1.3e-36 158.7 612 33.7
Glyma.13G273000 Glycine max HOM05D004118 ORTHO05D004686 1.3e-36 158.7 741 28.3
Cfa020624 Carpinus fangiana HOM05D004118 ORTHO05D004686 3.0e-36 157.5 703 32.1
Ciclev10007570m.g Citrus clementina HOM05D004118 ORTHO05D004686 5.0e-36 156.8 714 28.3
FAN21G0508 Fragaria x ananassa HOM05D004118 ORTHO05D004686 6.6e-36 156.4 730 29.9
Manes.03G104700 Manihot esculenta HOM05D004118 ORTHO05D004686 6.6e-36 156.4 713 30.0
Sopen12g005780 Solanum pennellii HOM05D004118 ORTHO05D004686 6.6e-36 156.4 670 33.4
Sabra11G0091500 Salix brachista HOM05D004118 ORTHO05D004686 1.1e-35 155.6 747 30.3
RcHm_v2.0_Chr5g0032241 Rosa chinensis HOM05D004118 ORTHO05D004686 1.5e-35 155.2 739 30.6
arahy.Tifrunner.gnm1.ann1.YMW7LF Arachis hypogaea HOM05D004118 ORTHO05D004686 1.9e-35 154.8 624 31.4
DCAR_021002 Daucus carota HOM05D004118 ORTHO05D004686 1.9e-35 154.8 731 30.8
FAN16G2866 Fragaria x ananassa HOM05D004118 ORTHO05D004686 2.5e-35 154.5 725 29.8
Sc16g0007320 Simmondsia chinensis HOM05D004118 ORTHO05D004686 2.5e-35 154.5 740 28.9
Medtr2g078530 Medicago truncatula HOM05D004118 ORTHO05D004686 3.3e-35 154.1 700 31.4
Haze_09381 Corylus avellana HOM05D004118 ORTHO05D004686 5.6e-35 153.3 703 31.4
Gohir.D01G046700 Gossypium hirsutum HOM05D004118 ORTHO05D004686 5.6e-35 153.3 633 32.5
MD11G1256900 Malus domestica HOM05D004118 ORTHO05D004686 5.6e-35 153.3 742 30.9
CiPaw.12G116800 Carya illinoinensis HOM05D004118 ORTHO05D004686 7.3e-35 152.9 736 32.1
Eucgr.F01179 Eucalyptus grandis HOM05D004118 ORTHO05D004686 7.3e-35 152.9 736 30.0
Sabra16G0245500 Salix brachista HOM05D004118 ORTHO05D004686 9.5e-35 152.5 691 28.8
Gohir.D13G152264 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.2e-34 152.1 694 33.4
Gohir.A13G147400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.6e-34 151.8 695 35.4
Prupe.4G173200 Prunus persica HOM05D004118 ORTHO05D004686 1.6e-34 151.8 729 31.6
Actinidia35234 Actinidia chinensis HOM05D004118 ORTHO05D001556 2.1e-34 151.4 653 31.5
Lsat_1_v5_gn_7_103661 Lactuca sativa HOM05D004118 ORTHO05D004686 2.1e-34 151.4 636 34.6
Nitab4.5_0003033g0050 Nicotiana tabacum HOM05D004118 ORTHO05D004686 2.1e-34 151.4 705 29.8
Lalb_Chr01g0006651 Lupinus albus HOM05D004118 ORTHO05D004686 2.8e-34 151.0 559 32.2
Sabra11G0090500 Salix brachista HOM05D004118 ORTHO05D004686 4.7e-34 150.2 749 29.9
Lsat_1_v5_gn_5_128820 Lactuca sativa HOM05D004118 ORTHO05D004686 6.2e-34 149.8 626 35.0
Lalb_Chr20g0109451 Lupinus albus HOM05D004118 ORTHO05D004686 6.2e-34 149.8 681 30.5
unitig_747.g21581 Utricularia gibba HOM05D004118 ORTHO05D004686 6.2e-34 149.8 724 29.0
CARHR090060 Cardamine hirsuta HOM05D004118 ORTHO05D004686 1.1e-33 149.1 614 33.9
CiPaw.11G166400 Carya illinoinensis HOM05D004118 ORTHO05D004686 1.1e-33 149.1 741 30.0
CSS0009782 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 1.8e-33 148.3 672 32.1
CSS0010936 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 6.8e-33 146.4 720 30.8
Potri.001G373100 Populus trichocarpa HOM05D004118 ORTHO05D004686 6.8e-33 146.4 736 28.5
BcaB04g20948 Brassica carinata HOM05D004118 ORTHO05D004686 5.8e-32 143.3 572 33.6
Gorai.013G171900 Gossypium raimondii HOM05D004118 ORTHO05D004686 1.3e-31 142.1 694 34.4
Cpa.g.sc80.12 Carica papaya HOM05D004118 ORTHO05D004686 2.2e-31 141.4 756 28.2
Lj8C153G19 Lonicera japonica HOM05D004118 ORTHO05D004686 2.2e-31 141.4 615 30.9
Dinv14950 Davidia involucrata HOM05D004118 ORTHO05D004686 3.7e-31 140.6 583 30.7
ECA234G1224 Erigeron canadensis HOM05D004118 ORTHO05D004686 3.7e-31 140.6 634 35.0
Rhsim04G0023200 Rhododendron simsii HOM05D004118 ORTHO05D004686 6.4e-31 139.8 660 29.4
Potri.011G097700 Populus trichocarpa HOM05D004118 ORTHO05D004686 8.3e-31 139.4 754 29.2
Thecc.07G100000 Theobroma cacao HOM05D004118 ORTHO05D004686 8.3e-31 139.4 751 28.9
Duzib170G0047 Durio zibethinus HOM05D004118 ORTHO05D004686 1.4e-30 138.7 669 31.1
VMungo1080G0043 Vigna mungo HOM05D004118 ORTHO05D004686 3.2e-30 137.5 715 28.7
Phvul.005G069300 Phaseolus vulgaris HOM05D004118 ORTHO05D004686 4.1e-30 137.1 718 32.0
AL3G27450 Arabidopsis lyrata HOM05D004118 ORTHO05D004686 5.4e-30 136.7 652 31.7
Gorai.002G066200 Gossypium raimondii HOM05D004118 ORTHO05D004686 1.6e-29 135.2 558 30.5
Dinv20215 Davidia involucrata HOM05D004118 ORTHO05D004686 3.5e-29 134.0 566 30.0
HanXRQChr10g0302481 Helianthus annuus HOM05D004118 ORTHO05D004686 7.8e-29 132.9 715 29.7
TWI38G2280 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 1.3e-28 132.1 680 29.7
THA.LOC104798758 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 1.7e-28 131.7 476 32.4
vmacro11898 Vaccinium macrocarpon HOM05D004118 ORTHO05D004686 2.3e-28 131.3 673 29.3
CSS0030924 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 5.1e-28 130.2 629 30.8
Psat5g241400 Pisum sativum HOM05D004118 ORTHO05D004686 6.6e-28 129.8 709 31.6
Lalb_Chr25g0286181 Lupinus albus HOM05D004118 ORTHO05D004686 8.6e-28 129.4 684 27.6
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 8.6e-28 129.4 713 31.1
Rhsim06G0203400 Rhododendron simsii HOM05D004118 ORTHO05D004686 1.1e-27 129.0 712 28.4
Cc05_g11580 Coffea canephora HOM05D004118 ORTHO05D004686 1.5e-27 128.6 836 25.6
Gohir.A08G021600 Gossypium hirsutum HOM05D004118 ORTHO05D004686 3.3e-27 127.5 568 28.9
DCAR_019575 Daucus carota HOM05D004118 ORTHO05D004686 1.6e-26 125.2 610 31.1
Aqoxy1G02262 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 1.8e-25 121.7 688 30.4
Sed0016267 Sechium edule HOM05D004118 ORTHO05D004686 1.8e-25 121.7 607 30.6
Glyma.12G227300 Glycine max HOM05D004118 ORTHO05D004686 3.1e-25 120.9 649 29.3
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 5.2e-25 120.2 690 29.1
Lalb_Chr19g0134031 Lupinus albus HOM05D004118 ORTHO05D004686 6.8e-25 119.8 551 30.7
Oeu025351.1 Olea europaea HOM05D004118 ORTHO05D004686 8.9e-25 119.4 638 31.7
BcaC09g48474 Brassica carinata HOM05D004118 ORTHO05D004686 1.5e-24 118.6 518 32.0
BolC1t04899H Brassica oleracea HOM05D004118 ORTHO05D004686 1.5e-24 118.6 518 32.0
C01p49420 Brassica napus HOM05D004118 ORTHO05D004686 2.6e-24 117.9 518 31.5
DCAR_017117 Daucus carota HOM05D004118 ORTHO05D004686 3.4e-24 117.5 598 30.8
CsaV3_3G019580 Cucumis sativus L. HOM05D004118 ORTHO05D004686 4.4e-24 117.1 757 29.2
PSO478G3864 Papaver somniferum HOM05D004118 ORTHO05D004686 9.9e-24 115.9 703 26.9
arahy.Tifrunner.gnm1.ann1.82B0EJ Arachis hypogaea HOM05D004118 ORTHO05D004686 1.7e-23 115.2 556 30.9
Sed0017211 Sechium edule HOM05D004118 ORTHO05D004686 4.9e-23 113.6 718 26.6
EL10Ac4g08266 Beta vulgaris HOM05D004118 ORTHO05D004686 1.1e-22 112.5 721 30.7
Gohir.A01G060200 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.9e-22 111.7 447 33.6
C05p52120 Brassica napus HOM05D004118 ORTHO05D004686 1.2e-21 109.0 450 34.9
BolC5t33897H Brassica oleracea HOM05D004118 ORTHO05D004686 1.2e-21 109.0 450 34.9
Gohir.D08G032400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.2e-21 109.0 555 27.9
BcaB06g29535 Brassica carinata HOM05D004118 ORTHO05D004686 1.6e-21 108.6 450 34.9
HanXRQChr15g0494281 Helianthus annuus HOM05D004118 ORTHO05D004686 1.6e-21 108.6 259 35.5
MELO3C019394.2 Cucumis melo HOM05D004118 ORTHO05D004686 2.7e-21 107.8 769 27.6
Gorai.004G029800 Gossypium raimondii HOM05D004118 ORTHO05D004686 6.0e-21 106.7 555 28.1
CANSAT35G0858 Cannabis sativa HOM05D004118 ORTHO05D004686 1.3e-20 105.5 713 29.6
Lalb_Chr03g0030811 Lupinus albus HOM05D004118 ORTHO05D004686 2.3e-20 104.8 516 28.7
A05p34340 Brassica napus HOM05D004118 ORTHO05D004686 3.0e-20 104.4 486 34.4
Lj3g0023579 Lotus japonicus HOM05D004118 ORTHO05D004686 8.6e-20 102.8 722 30.1
PSO675G0887 Papaver somniferum HOM05D004118 ORTHO05D004686 8.6e-20 102.8 699 26.0
Hma1.2p1_0313F.1_g121640 Hydrangea macrophylla HOM05D004118 ORTHO05D004686 1.1e-19 102.4 588 32.8
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 9.6e-19 99.4 266 33.5
AT3G15095 Arabidopsis thaliana HOM05D004118 ORTHO05D004686 2.8e-18 97.8 412 32.3
PSO541G0755 Papaver somniferum HOM05D004118 ORTHO05D004686 4.7e-18 97.1 684 25.6
BraA05t22255Z Brassica rapa HOM05D004118 ORTHO05D004686 2.4e-17 94.7 457 32.8
PSO017G1325 Papaver somniferum HOM05D004118 ORTHO05D004686 3.1e-17 94.4 730 26.7
AUR62036141 Chenopodium quinoa HOM05D004118 ORTHO05D004686 2.0e-16 91.7 701 27.8
Actinidia14383 Actinidia chinensis HOM05D004118 ORTHO05D004686 2.6e-16 91.3 163 41.7
Ah.04g162010 Amaranthus hybridus HOM05D004118 ORTHO05D004686 3.4e-16 90.9 673 28.7
TPR.G17554 Trifolium pratense HOM05D004118 ORTHO05D004686 3.4e-16 90.9 698 28.5
Zm00001eb395950 Zea mays HOM05D004118 ORTHO05D004686 5.8e-16 90.1 260 32.7
GSVIVG01014262001 Vitis vinifera HOM05D004118 ORTHO05D003395 1.9e-14 85.1 456 32.5
Zm00001eb014970 Zea mays HOM05D004118 ORTHO05D004686 7.1e-14 83.2 273 32.6
Aqoxy4G00578 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 1.6e-13 82.0 683 28.6
HPP92_003871 Vanilla planifolia HOM05D004118 ORTHO05D004686 2.7e-13 81.3 647 24.9
HPP92_003895 Vanilla planifolia HOM05D004118 ORTHO05D004686 3.0e-12 77.8 261 29.5
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 6.6e-12 76.6 686 26.8
HanXRQChr12g0372791 Helianthus annuus HOM05D004118 ORTHO05D004686 1.1e-11 75.9 157 37.6
Cc04_g12070 Coffea canephora HOM05D004118 ORTHO05D004686 3.6e-10 70.9 134 40.3
Atru.chr2.2380 Acer truncatum HOM05D004118 ORTHO05D004686 4.8e-10 70.5 277 31.0
Nn1g06377 Nelumbo nucifera HOM05D004118 ORTHO05D004686 9.0e-09 66.2 232 29.7
HPP92_002942 Vanilla planifolia HOM05D004118 ORTHO05D004686 4.4e-08 63.9 657 25.7
Atru.chr2.2381 Acer truncatum HOM05D004118 ORTHO05D004686 2.2e-07 61.6 158 36.1
PSO675G3813 Papaver somniferum HOM05D004118 ORTHO05D004686 6.4e-07 60.1 124 38.7
Lsat_1_v5_gn_1_36460 Lactuca sativa HOM05D004118 ORTHO05D004686 8.4e-07 59.7 145 36.6
HPP92_003896 Vanilla planifolia HOM05D004118 ORTHO05D004686 8.4e-07 59.7 162 32.7
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 2.4e-06 58.2 539 26.7
CDE10G0292 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 5.4e-06 57.0 354 27.4
Solyc12g014040.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 5.4e-06 57.0 155 36.8
Lsat_1_v5_gn_4_172920 Lactuca sativa HOM05D004118 ORTHO05D004686 9.3e-06 56.2 200 31.5


User provided reference genes

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