Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold130G34341 Striga asiatica HOM05D005543 ORTHO05D006584 8.6e-63 243.4 118 100.0
SGA_v2.0_scaffold166G38393 Striga asiatica HOM05D005543 ORTHO05D006584 1.1e-28 130.2 121 61.2
MSTRG.22116 Avicennia marina HOM05D005543 ORTHO05D006584 6.9e-20 100.9 122 50.0
SGA_v2.0_scaffold16G07845 Striga asiatica HOM05D005543 ORTHO05D006584 2.9e-18 95.5 92 62.0
SalBow6G1236 Salvia bowleyana HOM05D005543 ORTHO05D006584 8.4e-18 94.0 140 42.9
SGA_v2.0_scaffold43G16323 Striga asiatica HOM05D005543 ORTHO05D006584 1.6e-16 89.7 106 50.0
Migut.N02941 Erythranthe guttata HOM05D005543 ORTHO05D006584 1.0e-15 87.0 135 39.3
Solyc12g056760.2 Solanum lycopersicum HOM05D005543 ORTHO05D006584 3.0e-15 85.5 45 77.8
Sopen12g029440 Solanum pennellii HOM05D005543 ORTHO05D006584 3.0e-15 85.5 45 75.6
ClCG08G007180 Citrullus lanatus HOM05D005543 ORTHO05D006584 3.9e-15 85.1 119 42.0
Nitab4.5_0002585g0010 Nicotiana tabacum HOM05D005543 ORTHO05D006584 3.9e-15 85.1 45 80.0
PGR102G0915 Punica granatum HOM05D005543 ORTHO05D006584 3.9e-15 85.1 45 77.8
CsaV3_6G004850 Cucumis sativus L. HOM05D005543 ORTHO05D006584 5.1e-15 84.7 122 40.2
Solyc04g072120.2 Solanum lycopersicum HOM05D005543 ORTHO05D006584 1.1e-14 83.6 45 75.6
Sopen04g028290 Solanum pennellii HOM05D005543 ORTHO05D006584 1.1e-14 83.6 45 75.6
Nitab4.5_0000433g0010 Nicotiana tabacum HOM05D005543 ORTHO05D006584 1.5e-14 83.2 45 73.3
Nitab4.5_0001000g0150 Nicotiana tabacum HOM05D005543 ORTHO05D006584 2.5e-14 82.4 45 73.3
PGSC0003DMG400016956 Solanum tuberosum HOM05D005543 ORTHO05D006584 2.5e-14 82.4 45 73.3
MELO3C019959.2 Cucumis melo HOM05D005543 ORTHO05D006584 3.3e-14 82.0 119 40.3
Peaxi162Scf00226g00217 Petunia axillaris HOM05D005543 ORTHO05D006584 3.3e-14 82.0 115 40.9
FAN15G0123 Fragaria x ananassa HOM05D005543 ORTHO05D006584 4.3e-14 81.6 45 71.1
Oeu022062.1 Olea europaea HOM05D005543 ORTHO05D006584 4.3e-14 81.6 130 42.3
Peaxi162Scf00160g01739 Petunia axillaris HOM05D005543 ORTHO05D006584 4.3e-14 81.6 45 71.1
PGSC0003DMG400031139 Solanum tuberosum HOM05D005543 ORTHO05D006584 5.6e-14 81.3 45 73.3
MD10G1038300 Malus domestica HOM05D005543 ORTHO05D006584 7.4e-14 80.9 45 73.3
THA.LOC104800097 Tarenaya hassleriana HOM05D005543 ORTHO05D006584 7.4e-14 80.9 63 58.7
Sed0022332 Sechium edule HOM05D005543 ORTHO05D006584 9.6e-14 80.5 45 71.1
HPP92_007671 Vanilla planifolia HOM05D005543 ORTHO05D006584 9.6e-14 80.5 45 75.6
Lj2g0006240 Lotus japonicus HOM05D005543 ORTHO05D006584 1.3e-13 80.1 46 73.9
Rhsim06G0093300 Rhododendron simsii HOM05D005543 ORTHO05D006584 1.3e-13 80.1 48 68.8
TAR625G0687 Trochodendron aralioides HOM05D005543 ORTHO05D006584 1.3e-13 80.1 45 73.3
Actinidia17758 Actinidia chinensis HOM05D005543 ORTHO05D006584 1.6e-13 79.7 63 57.1
MD05G1036200 Malus domestica HOM05D005543 ORTHO05D006584 1.6e-13 79.7 45 73.3
Sc20g0003140 Simmondsia chinensis HOM05D005543 ORTHO05D006584 1.6e-13 79.7 43 76.7
Cc10_g06390 Coffea canephora HOM05D005543 ORTHO05D006584 2.1e-13 79.3 45 71.1
RcHm_v2.0_Chr6g0273681 Rosa chinensis HOM05D005543 ORTHO05D006584 2.1e-13 79.3 45 71.1
Atru.chr13.1972 Acer truncatum HOM05D005543 ORTHO05D006584 2.8e-13 79.0 45 75.6
Cpa.g.sc26.124 Carica papaya HOM05D005543 ORTHO05D006584 2.8e-13 79.0 45 71.1
Aa31LG4G8860 Aethionema arabicum HOM05D005543 ORTHO05D006584 3.7e-13 78.6 45 73.3
Duzib116G0276 Durio zibethinus HOM05D005543 ORTHO05D006584 3.7e-13 78.6 45 68.9
FvH4_2g12791 Fragaria vesca HOM05D005543 ORTHO05D006584 3.7e-13 78.6 45 68.9
FAN24G1753 Fragaria x ananassa HOM05D005543 ORTHO05D006584 3.7e-13 78.6 45 68.9
FAN27G1145 Fragaria x ananassa HOM05D005543 ORTHO05D006584 3.7e-13 78.6 45 68.9
Gohir.A05G247100 Gossypium hirsutum HOM05D005543 ORTHO05D006584 3.7e-13 78.6 45 68.9
Gohir.D05G248600 Gossypium hirsutum HOM05D005543 ORTHO05D006584 3.7e-13 78.6 45 68.9
Gorai.009G259700 Gossypium raimondii HOM05D005543 ORTHO05D006584 3.7e-13 78.6 45 68.9
BcaC08g45757 Brassica carinata HOM05D005543 ORTHO05D006584 4.8e-13 78.2 63 55.6
A07p30600 Brassica napus HOM05D005543 ORTHO05D006584 4.8e-13 78.2 63 55.6
C06p35380 Brassica napus HOM05D005543 ORTHO05D006584 4.8e-13 78.2 63 55.6
Haze_17833 Corylus avellana HOM05D005543 ORTHO05D006584 4.8e-13 78.2 45 71.1
CSS0010673 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 6.2e-13 77.8 45 66.7
COL.COLO4_13722 Corchorus olitorius HOM05D005543 ORTHO05D006584 6.2e-13 77.8 45 71.1
Hma1.2p1_0276F.1_g110980 Hydrangea macrophylla HOM05D005543 ORTHO05D006584 6.2e-13 77.8 45 68.9
Hund17502 Selenicereus undatus HOM05D005543 ORTHO05D006584 6.2e-13 77.8 48 72.9
BcaB03g15617 Brassica carinata HOM05D005543 ORTHO05D006584 8.1e-13 77.4 63 55.6
Haze_17839 Corylus avellana HOM05D005543 ORTHO05D006584 1.1e-12 77.0 45 68.9
Glyma.16G160100 Glycine max HOM05D005543 ORTHO05D006584 1.1e-12 77.0 46 69.6
TAR381G0628 Trochodendron aralioides HOM05D005543 ORTHO05D006584 1.1e-12 77.0 45 68.9
Lalb_Chr06g0161821 Lupinus albus HOM05D005543 ORTHO05D006584 1.4e-12 76.6 45 75.6
Phvul.004G088200 Phaseolus vulgaris HOM05D005543 ORTHO05D006584 1.4e-12 76.6 46 67.4
Thecc.08G164300 Theobroma cacao HOM05D005543 ORTHO05D006584 1.4e-12 76.6 45 66.7
Ah.05g168360 Amaranthus hybridus HOM05D005543 ORTHO05D006584 1.8e-12 76.3 46 71.7
BraA07t30695Z Brassica rapa HOM05D005543 ORTHO05D006584 1.8e-12 76.3 63 54.0
Eucgr.F04165 Eucalyptus grandis HOM05D005543 ORTHO05D006584 1.8e-12 76.3 45 73.3
Prupe.8G044500 Prunus persica HOM05D005543 ORTHO05D006584 1.8e-12 76.3 45 66.7
unitig_578.g16221 Utricularia gibba HOM05D005543 ORTHO05D006584 1.8e-12 76.3 45 77.8
CiPaw.16G007100 Carya illinoinensis HOM05D005543 ORTHO05D006584 2.4e-12 75.9 45 73.3
DCAR_009611 Daucus carota HOM05D005543 ORTHO05D006584 3.1e-12 75.5 45 75.6
Lsat_1_v5_gn_9_42581 Lactuca sativa HOM05D005543 ORTHO05D006584 3.1e-12 75.5 112 43.8
CANSAT25G2335 Cannabis sativa HOM05D005543 ORTHO05D006584 4.0e-12 75.1 45 68.9
Carub.0002s1854 Capsella rubella HOM05D005543 ORTHO05D006584 4.0e-12 75.1 45 71.1
Thhalv10019179m.g Eutrema salsugineum HOM05D005543 ORTHO05D006584 4.0e-12 75.1 45 71.1
PSO541G4578 Papaver somniferum HOM05D005543 ORTHO05D006584 4.0e-12 75.1 45 68.9
Sp5g26800 Schrenkiella parvula HOM05D005543 ORTHO05D006584 4.0e-12 75.1 45 71.1
SpUn0095_0030 Schrenkiella parvula HOM05D005543 ORTHO05D006584 4.0e-12 75.1 45 71.1
Dinv41020 Davidia involucrata HOM05D005543 ORTHO05D006584 5.3e-12 74.7 121 38.8
PSO675G1818 Papaver somniferum HOM05D005543 ORTHO05D006584 5.3e-12 74.7 45 66.7
BolC6t38643H Brassica oleracea HOM05D005543 ORTHO05D006584 6.9e-12 74.3 63 54.0
Lj7A386T90 Lonicera japonica HOM05D005543 ORTHO05D006584 6.9e-12 74.3 45 66.7
VMungo0464G0571 Vigna mungo HOM05D005543 ORTHO05D006584 6.9e-12 74.3 45 66.7
AT1G71780 Arabidopsis thaliana HOM05D005543 ORTHO05D006584 9.0e-12 73.9 45 68.9
Nitab4.5_0004541g0020 Nicotiana tabacum HOM05D005543 ORTHO05D006584 9.0e-12 73.9 45 73.3
Psat0s2687g0120 Pisum sativum HOM05D005543 ORTHO05D006584 9.0e-12 73.9 46 67.4
HanXRQChr11g0320551 Helianthus annuus HOM05D005543 ORTHO05D006584 1.2e-11 73.6 111 39.6
AL2G31350 Arabidopsis lyrata HOM05D005543 ORTHO05D006584 1.5e-11 73.2 45 68.9
CDE05G2658 Ceratophyllum demersum HOM05D005543 ORTHO05D006584 1.5e-11 73.2 45 64.4
Ciclev10002600m.g Citrus clementina HOM05D005543 ORTHO05D006584 1.5e-11 73.2 45 66.7
Manes.02G185600 Manihot esculenta HOM05D005543 ORTHO05D006584 2.0e-11 72.8 45 66.7
Medtr6g034680 Medicago truncatula HOM05D005543 ORTHO05D006584 2.0e-11 72.8 46 65.2
EL10Ac1g01633 Beta vulgaris HOM05D005543 ORTHO05D006584 2.6e-11 72.4 46 67.4
AUR62026611 Chenopodium quinoa HOM05D005543 ORTHO05D006584 3.4e-11 72.0 46 69.6
Nn5g28876 Nelumbo nucifera HOM05D005543 ORTHO05D006584 3.4e-11 72.0 63 54.0
arahy.Tifrunner.gnm1.ann1.FFL75L Arachis hypogaea HOM05D005543 ORTHO05D006584 4.5e-11 71.6 45 68.9
arahy.Tifrunner.gnm1.ann1.XA0Q13 Arachis hypogaea HOM05D005543 ORTHO05D006584 4.5e-11 71.6 45 68.9
Ca_04656_v3 Cicer arietinum L. HOM05D005543 ORTHO05D006584 4.5e-11 71.6 46 67.4
ECA232G2646 Erigeron canadensis HOM05D005543 ORTHO05D006584 4.5e-11 71.6 46 71.7
Aqoxy6G00453 Aquilegia oxysepala HOM05D005543 ORTHO05D006584 5.8e-11 71.2 45 64.4
Psat6g189440 Pisum sativum HOM05D005543 ORTHO05D006584 5.8e-11 71.2 45 62.2
Potri.002G062300 Populus trichocarpa HOM05D005543 ORTHO05D006584 5.8e-11 71.2 45 73.3
TWI53G2072 Tripterygium wilfordii HOM05D005543 ORTHO05D006584 7.6e-11 70.9 121 37.2
BolC6t39636H Brassica oleracea HOM05D005543 ORTHO05D006584 9.9e-11 70.5 45 68.9
C06p45840 Brassica napus HOM05D005543 ORTHO05D006584 1.3e-10 70.1 45 68.9
CSS0045165 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 1.7e-10 69.7 103 40.8
Medtr1g097400 Medicago truncatula HOM05D005543 ORTHO05D006584 2.2e-10 69.3 45 62.2
vmacro21199 Vaccinium macrocarpon HOM05D005543 ORTHO05D006584 2.2e-10 69.3 44 63.6
BcaC08g46607 Brassica carinata HOM05D005543 ORTHO05D006584 2.9e-10 68.9 117 41.0
A07p37930 Brassica napus HOM05D005543 ORTHO05D006584 2.9e-10 68.9 45 66.7
BraA07t31358Z Brassica rapa HOM05D005543 ORTHO05D006584 2.9e-10 68.9 45 66.7
Nn1g05159 Nelumbo nucifera HOM05D005543 ORTHO05D006584 2.9e-10 68.9 46 65.2
GSVIVG01013678001 Vitis vinifera HOM05D005543 ORTHO05D006584 2.9e-10 68.9 46 67.4
AUR62034923 Chenopodium quinoa HOM05D005543 ORTHO05D006584 3.8e-10 68.6 46 65.2
TPR.G17022 Trifolium pratense HOM05D005543 ORTHO05D006584 4.9e-10 68.2 45 60.0
Lj4A705G47 Lonicera japonica HOM05D005543 ORTHO05D006584 6.4e-10 67.8 143 37.1
QL02p036789 Quercus lobata HOM05D005543 ORTHO05D006584 6.4e-10 67.8 51 60.8
BcaC08g46604 Brassica carinata HOM05D005543 ORTHO05D006584 8.4e-10 67.4 115 40.9
CARHR291000 Cardamine hirsuta HOM05D005543 ORTHO05D006584 1.4e-09 66.6 63 52.4
Lj5g0027482 Lotus japonicus HOM05D005543 ORTHO05D006584 1.4e-09 66.6 44 61.4
Sabra02G0050300 Salix brachista HOM05D005543 ORTHO05D006584 1.9e-09 66.2 45 66.7
Ca_10645_v3 Cicer arietinum L. HOM05D005543 ORTHO05D006584 3.2e-09 65.5 44 59.1
DCAR_019968 Daucus carota HOM05D005543 ORTHO05D006584 3.2e-09 65.5 63 47.6
SEGI_37275 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 9.3e-09 63.9 44 61.4
Os01g0715800 Oryza sativa ssp. japonica HOM05D005543 ORTHO05D006584 2.1e-08 62.8 46 63.0
Sabra05G0151400 Salix brachista HOM05D005543 ORTHO05D006584 1.0e-07 60.5 43 67.4
SEGI_03773 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 1.0e-07 60.5 44 56.8
SEGI_04047 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 1.0e-07 60.5 44 56.8
Pp3c1_40160 Physcomitrium patens HOM05D005543 ORTHO05D006584 1.5e-06 56.6 56 46.4
SEGI_08036 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 7.4e-06 54.3 49 49.0


User provided reference genes

Program Settings