Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold130G34274 Striga asiatica HOM05D004150 ORTHO05D005087 2.9e-287 991.1 479 100.0
Oeu058459.1 Olea europaea HOM05D004150 ORTHO05D005087 2.0e-211 739.2 499 72.5
MSTRG.14976 Avicennia marina HOM05D004150 ORTHO05D005087 2.9e-210 735.3 498 73.1
Oeu010027.3 Olea europaea HOM05D004150 ORTHO05D005087 1.4e-207 726.5 525 70.5
Cc05_g10890 Coffea canephora HOM05D004150 ORTHO05D005087 1.7e-205 719.5 498 71.1
SalBow7G0391 Salvia bowleyana HOM05D004150 ORTHO05D005087 7.7e-203 710.7 499 71.9
Hma1.2p1_2701F.1_g327060 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 5.0e-202 708.0 498 69.9
GSVIVG01014152001 Vitis vinifera HOM05D004150 ORTHO05D005087 4.2e-201 704.9 498 69.3
CAN.G375.32 Capsicum annuum HOM05D004150 ORTHO05D005087 8.8e-199 697.2 542 64.8
Migut.H02018 Erythranthe guttata HOM05D004150 ORTHO05D005087 4.8e-197 691.4 438 76.3
PGSC0003DMG400007094 Solanum tuberosum HOM05D004150 ORTHO05D005087 1.8e-196 689.5 541 64.3
Sopen07g030520 Solanum pennellii HOM05D004150 ORTHO05D005087 7.0e-196 687.6 542 63.8
Solyc07g062250.3 Solanum lycopersicum HOM05D004150 ORTHO05D005087 1.2e-195 686.8 542 63.8
CSS0001873 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 7.7e-195 684.1 500 67.6
CSS0042666 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 7.7e-195 684.1 501 68.7
Potri.003G026500 Populus trichocarpa HOM05D004150 ORTHO05D005087 8.5e-194 680.6 499 66.5
Cfa019528 Carpinus fangiana HOM05D004150 ORTHO05D005087 4.2e-193 678.3 500 66.8
Nitab4.5_0000347g0180 Nicotiana tabacum HOM05D004150 ORTHO05D005087 4.2e-193 678.3 542 63.7
Peaxi162Scf00111g01477 Petunia axillaris HOM05D004150 ORTHO05D005087 9.4e-193 677.2 542 64.2
Manes.03G091700 Manihot esculenta HOM05D004150 ORTHO05D005087 4.0e-191 671.8 499 66.1
PGR083G0816 Punica granatum HOM05D004150 ORTHO05D005087 6.8e-191 671.0 504 64.5
Lj1A826G61 Lonicera japonica HOM05D004150 ORTHO05D005087 1.2e-190 670.2 509 66.8
Potri.011G106600 Populus trichocarpa HOM05D004150 ORTHO05D005087 1.7e-189 666.4 501 64.7
Glyma.13G266400 Glycine max HOM05D004150 ORTHO05D005087 1.4e-188 663.3 500 65.4
Lsat_1_v5_gn_9_100501 Lactuca sativa HOM05D004150 ORTHO05D005087 1.4e-188 663.3 504 66.1
Nn6g34456 Nelumbo nucifera HOM05D004150 ORTHO05D005087 2.4e-188 662.5 498 64.7
VMungo1080G1533 Vigna mungo HOM05D004150 ORTHO05D005087 3.1e-188 662.1 502 65.9
Psat5g234480 Pisum sativum HOM05D004150 ORTHO05D005087 4.1e-188 661.8 503 66.4
MD03G1246300 Malus domestica HOM05D004150 ORTHO05D005087 5.4e-188 661.4 502 65.7
Glyma.12G231700 Glycine max HOM05D004150 ORTHO05D005087 5.9e-187 657.9 500 66.0
TWI38G0344 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 5.9e-187 657.9 505 65.1
CiPaw.11G157600 Carya illinoinensis HOM05D004150 ORTHO05D005087 1.5e-185 653.3 500 64.0
Eucgr.F01300 Eucalyptus grandis HOM05D004150 ORTHO05D005087 1.9e-185 652.9 507 63.3
Phvul.005G079200 Phaseolus vulgaris HOM05D004150 ORTHO05D005087 3.2e-185 652.1 502 64.9
Sc03g0010640 Simmondsia chinensis HOM05D004150 ORTHO05D005087 7.2e-185 651.0 505 64.8
CANSAT56G2087 Cannabis sativa HOM05D004150 ORTHO05D005087 2.7e-184 649.0 502 64.9
EL10Ac4g08396 Beta vulgaris HOM05D004150 ORTHO05D005087 8.0e-184 647.5 501 65.3
Manes.15G097400 Manihot esculenta HOM05D004150 ORTHO05D005087 2.3e-183 646.0 499 63.3
Atru.chr2.2029 Acer truncatum HOM05D004150 ORTHO05D005087 5.2e-183 644.8 502 64.9
MD11G1267300 Malus domestica HOM05D004150 ORTHO05D005087 5.2e-183 644.8 502 64.5
RcHm_v2.0_Chr5g0030011 Rosa chinensis HOM05D004150 ORTHO05D005087 6.8e-183 644.4 501 65.3
Sabra16G0254300 Salix brachista HOM05D004150 ORTHO05D005087 8.8e-183 644.0 530 61.7
MBI06_g16571_MAGBIO Magnolia biondii HOM05D004150 ORTHO05D005087 1.2e-182 643.7 499 64.3
HanXRQChr10g0305531 Helianthus annuus HOM05D004150 ORTHO05D005087 2.6e-182 642.5 503 64.0
Medtr2g075340 Medicago truncatula HOM05D004150 ORTHO05D005087 3.4e-182 642.1 498 63.9
Atru.chr2.2041 Acer truncatum HOM05D004150 ORTHO05D005087 4.4e-182 641.7 502 64.7
Thecc.07G119700 Theobroma cacao HOM05D004150 ORTHO05D005087 1.3e-181 640.2 500 63.8
TWI39G0561 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 1.3e-181 640.2 503 62.6
Ca_03941_v3 Cicer arietinum L. HOM05D004150 ORTHO05D005087 3.7e-181 638.6 504 64.1
COL.COLO4_17523 Corchorus olitorius HOM05D004150 ORTHO05D005087 1.1e-180 637.1 500 63.6
Ciclev10019972m.g Citrus clementina HOM05D004150 ORTHO05D005087 1.8e-180 636.3 503 62.6
Actinidia21439 Actinidia chinensis HOM05D004150 ORTHO05D005087 7.0e-180 634.4 500 64.8
PSO170G1443 Papaver somniferum HOM05D004150 ORTHO05D005087 2.0e-179 632.9 504 62.9
TAR629G2423 Trochodendron aralioides HOM05D004150 ORTHO05D005087 5.0e-178 628.2 439 69.0
vmacro09408 Vaccinium macrocarpon HOM05D004150 ORTHO05D005087 5.0e-178 628.2 507 63.7
PSO782G0021 Papaver somniferum HOM05D004150 ORTHO05D005087 1.1e-177 627.1 504 62.7
Gohir.A13G149900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.9e-177 626.3 500 62.8
Rhsim04G0036400 Rhododendron simsii HOM05D004150 ORTHO05D005087 9.5e-177 624.0 505 63.8
Aqoxy1G01964 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 1.2e-176 623.6 498 62.0
ClCG11G017260 Citrullus lanatus HOM05D004150 ORTHO05D005087 1.2e-176 623.6 547 58.0
Gohir.A01G052900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.2e-176 623.6 504 63.1
Gorai.002G053300 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.2e-176 623.6 505 63.2
CsaV3_4G032910 Cucumis sativus L. HOM05D004150 ORTHO05D005087 2.1e-176 622.9 498 61.4
Gohir.D01G042500 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.0e-175 620.5 505 63.0
Lj3g0004524 Lotus japonicus HOM05D004150 ORTHO05D005087 1.0e-175 620.5 508 63.8
Rhsim04G0035400 Rhododendron simsii HOM05D004150 ORTHO05D005087 6.8e-175 617.8 505 63.2
THA.LOC104810428 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 1.2e-174 617.1 502 61.6
FvH4_3g17970 Fragaria vesca HOM05D004150 ORTHO05D005087 1.5e-174 616.7 505 63.4
FAN25G1025 Fragaria x ananassa HOM05D004150 ORTHO05D005087 5.7e-174 614.8 523 61.2
FAN21G0088 Fragaria x ananassa HOM05D004150 ORTHO05D005087 9.8e-174 614.0 504 62.9
Lalb_Chr25g0285681 Lupinus albus HOM05D004150 ORTHO05D005087 1.3e-173 613.6 503 63.6
Lalb_Chr19g0133751 Lupinus albus HOM05D004150 ORTHO05D005087 2.9e-173 612.5 503 62.4
Dinv15009 Davidia involucrata HOM05D004150 ORTHO05D005087 4.9e-173 611.7 412 71.4
HanXRQChr17g0556791 Helianthus annuus HOM05D004150 ORTHO05D005087 8.3e-173 610.9 498 62.0
MELO3C025660.2 Cucumis melo HOM05D004150 ORTHO05D005087 1.4e-172 610.1 510 59.6
THA.LOC104815577 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 2.4e-172 609.4 502 60.6
FAN16G0401 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.2e-171 607.1 517 61.5
TPR.G13030 Trifolium pratense HOM05D004150 ORTHO05D005087 9.5e-169 597.4 506 61.3
ECA234G0958 Erigeron canadensis HOM05D004150 ORTHO05D005087 2.8e-168 595.9 507 60.7
FAN11G2611 Fragaria x ananassa HOM05D004150 ORTHO05D005087 3.6e-168 595.5 517 61.1
Actinidia12595 Actinidia chinensis HOM05D004150 ORTHO05D005087 6.2e-168 594.7 565 55.4
AUR62019617 Chenopodium quinoa HOM05D004150 ORTHO05D005087 6.2e-168 594.7 503 61.0
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 2.6e-166 589.3 501 60.5
AUR62039606 Chenopodium quinoa HOM05D004150 ORTHO05D005087 2.6e-166 589.3 503 60.2
Lalb_Chr03g0031251 Lupinus albus HOM05D004150 ORTHO05D005087 3.2e-164 582.4 502 59.6
Gohir.D13G154200 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.2e-163 580.5 439 65.1
Potri.001G386700 Populus trichocarpa HOM05D004150 ORTHO05D005087 2.0e-163 579.7 413 68.0
Sed0003063 Sechium edule HOM05D004150 ORTHO05D005087 2.7e-163 579.3 439 65.4
AT3G14830 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 4.6e-163 578.6 506 57.9
AL3G27140 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 1.0e-162 577.4 505 58.2
TAR627G0919 Trochodendron aralioides HOM05D004150 ORTHO05D005087 1.0e-162 577.4 412 68.2
Dinv18386 Davidia involucrata HOM05D004150 ORTHO05D005087 2.3e-162 576.2 412 68.7
Aa31LG8G2040 Aethionema arabicum HOM05D004150 ORTHO05D005087 3.9e-162 575.5 500 57.6
CARHR089770 Cardamine hirsuta HOM05D004150 ORTHO05D005087 3.3e-161 572.4 507 57.8
Prupe.4G158300 Prunus persica HOM05D004150 ORTHO05D005087 1.6e-160 570.1 430 66.3
CARHR043670 Cardamine hirsuta HOM05D004150 ORTHO05D005087 1.2e-158 563.9 499 58.7
Sp1g39990 Schrenkiella parvula HOM05D004150 ORTHO05D005087 7.5e-158 561.2 499 57.9
BcaC05g29034 Brassica carinata HOM05D004150 ORTHO05D005087 6.4e-157 558.1 503 56.9
BolC5t33929H Brassica oleracea HOM05D004150 ORTHO05D005087 8.3e-157 557.8 503 57.1
Carub.0003s1449 Capsella rubella HOM05D004150 ORTHO05D005087 1.1e-156 557.4 511 56.9
Gorai.013G174200 Gossypium raimondii HOM05D004150 ORTHO05D005087 7.1e-156 554.7 491 58.2
Sabra11G0094900 Salix brachista HOM05D004150 ORTHO05D005087 7.1e-156 554.7 435 63.7
C05p52450 Brassica napus HOM05D004150 ORTHO05D005087 1.2e-155 553.9 503 56.7
BcaB06g25355 Brassica carinata HOM05D004150 ORTHO05D005087 6.0e-155 551.6 501 57.3
Thhalv10011465m.g Eutrema salsugineum HOM05D004150 ORTHO05D005087 1.3e-154 550.4 498 56.0
BraA05t22282Z Brassica rapa HOM05D004150 ORTHO05D005087 2.3e-154 549.7 500 56.2
A05p34660 Brassica napus HOM05D004150 ORTHO05D005087 2.5e-153 546.2 501 56.1
Carub.0001s4264 Capsella rubella HOM05D004150 ORTHO05D005087 3.6e-152 542.3 498 55.0
BraA06t23329Z Brassica rapa HOM05D004150 ORTHO05D005087 3.1e-151 539.3 502 55.8
AT1G53450 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 4.0e-151 538.9 498 55.4
A06p01010 Brassica napus HOM05D004150 ORTHO05D005087 1.5e-150 537.0 502 55.6
BcaC08g43529 Brassica carinata HOM05D004150 ORTHO05D005087 4.4e-150 535.4 502 55.0
BolC6t35999H Brassica oleracea HOM05D004150 ORTHO05D005087 4.4e-150 535.4 502 55.0
ATR0127G006 Amborella trichopoda HOM05D004150 ORTHO05D005087 9.9e-150 534.3 502 54.8
BcaB07g33329 Brassica carinata HOM05D004150 ORTHO05D005087 3.7e-149 532.3 499 54.5
C06p09220 Brassica napus HOM05D004150 ORTHO05D005087 1.9e-148 530.0 501 54.7
Nn3g21055 Nelumbo nucifera HOM05D004150 ORTHO05D005087 1.2e-144 517.3 420 62.4
ECA240G3777 Erigeron canadensis HOM05D004150 ORTHO05D005087 3.1e-143 512.7 417 60.9
unitig_21.g20061 Utricularia gibba HOM05D004150 ORTHO05D005087 9.9e-142 507.7 499 53.9
Duzib213G1096 Durio zibethinus HOM05D004150 ORTHO05D005087 2.9e-141 506.1 439 59.9
Hund10457 Selenicereus undatus HOM05D004150 ORTHO05D005087 3.8e-141 505.8 442 59.0
Os01g0729900 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 4.9e-141 505.4 515 51.3
Zm00001eb154220 Zea mays HOM05D004150 ORTHO05D005087 1.3e-138 497.3 517 51.6
CDE06G0863 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 1.5e-137 493.8 481 53.8
CiPaw.12G111300 Carya illinoinensis HOM05D004150 ORTHO05D005087 3.3e-137 492.7 378 64.6
Os05g0530300 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 9.9e-134 481.1 531 48.0
QL08p025853 Quercus lobata HOM05D004150 ORTHO05D005087 8.1e-128 461.5 313 70.0
Zm00001eb361900 Zea mays HOM05D004150 ORTHO05D005087 2.0e-126 456.8 456 52.6
Nitab4.5_0024430g0010 Nicotiana tabacum HOM05D004150 ORTHO05D005087 9.9e-126 454.5 310 71.6
HPP92_005189 Vanilla planifolia HOM05D004150 ORTHO05D005087 1.1e-121 441.0 460 50.2
Cpa.g.sc77.46 Carica papaya HOM05D004150 ORTHO05D005087 3.3e-121 439.5 306 68.0
AL1G61960 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 1.8e-111 407.1 341 57.5
CDE02G2021 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 1.3e-106 391.0 297 63.3
DCAR_013267 Daucus carota HOM05D004150 ORTHO05D005087 8.2e-104 381.7 309 59.5
SMO169G0186 Selaginella moellendorffii HOM05D004150 ORTHO05D005087 5.5e-100 369.0 310 60.0
Os06g0152800 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 3.6e-99 366.3 406 47.5
AagrBONN_evm.TU.Sc2ySwM_362.2802 Anthoceros agrestis HOM05D004150 ORTHO05D005087 7.9e-99 365.2 556 40.5
Hma1.2p1_1650F.1_g295710 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 9.1e-95 351.7 296 62.2
Mapoly0001s0101 Marchantia polymorpha HOM05D004150 ORTHO05D005087 2.0e-94 350.5 579 38.9
Pp3c9_8060 Physcomitrium patens HOM05D004150 ORTHO05D005087 1.0e-90 338.2 559 37.9
Zm00001eb271010 Zea mays HOM05D004150 ORTHO05D005087 3.7e-88 329.7 321 50.2
Zm00001eb293260 Zea mays HOM05D004150 ORTHO05D005087 2.5e-84 317.0 396 46.2
SEGI_28417 Sequoiadendron giganteum HOM05D004150 ORTHO05D005087 1.4e-82 311.2 412 41.0
Mapoly0030s0045 Marchantia polymorpha HOM05D004150 ORTHO05D005087 8.3e-64 248.8 454 38.1
Haze_09266 Corylus avellana HOM05D004150 ORTHO05D005087 1.2e-54 218.4 217 53.5
Gorai.010G164000 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.3e-53 214.9 159 62.9
Haze_09270 Corylus avellana HOM05D004150 ORTHO05D005087 2.3e-50 204.1 228 46.9
Gohir.A02G079101 Gossypium hirsutum HOM05D004150 ORTHO05D005087 8.1e-43 179.1 145 62.8
QL08p025867 Quercus lobata HOM05D004150 ORTHO05D005087 2.0e-41 174.5 240 45.4
Gohir.D04G018433 Gossypium hirsutum HOM05D004150 ORTHO05D005087 5.8e-41 172.9 159 54.1
EL10Ac9g22809 Beta vulgaris HOM05D004150 ORTHO05D005087 1.3e-40 171.8 121 69.4
Gorai.001G168800 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.4e-39 168.3 93 77.4
Gohir.A11G228702 Gossypium hirsutum HOM05D004150 ORTHO05D005087 3.5e-38 163.7 93 75.3
AL1G62010 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 5.1e-37 159.8 127 64.6
VMungo1309G1261 Vigna mungo HOM05D004150 ORTHO05D005087 3.6e-35 153.7 108 65.7
Haze_09267 Corylus avellana HOM05D004150 ORTHO05D005087 6.2e-35 152.9 167 47.3
Haze_09268 Corylus avellana HOM05D004150 ORTHO05D005087 6.2e-35 152.9 167 47.3
Actinidia33318 Actinidia chinensis HOM05D004150 ORTHO05D005087 8.1e-35 152.5 174 46.6
Aqoxy1G01962 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 8.6e-29 132.5 136 50.0
BolC5t30531H Brassica oleracea HOM05D004150 ORTHO05D032065 5.6e-28 129.8 170 44.7
Haze_11864 Corylus avellana HOM05D004150 ORTHO05D005087 3.8e-24 117.1 146 44.5
CDE09G0238 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 9.3e-23 112.5 144 38.9
arahy.Tifrunner.gnm1.ann1.H8RDCT Arachis hypogaea HOM05D004150 ORTHO05D005087 4.8e-19 100.1 86 58.1
arahy.Tifrunner.gnm1.ann1.R67SZW Arachis hypogaea HOM05D004150 ORTHO05D005087 4.8e-19 100.1 86 58.1
VMungo0251G3124 Vigna mungo HOM05D004150 ORTHO05D005087 1.5e-17 95.1 72 59.7
ECA240G1314 Erigeron canadensis HOM05D000062 ORTHO05D000043 5.1e-13 80.1 45 77.8


User provided reference genes

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