Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold130G34232 Striga asiatica HOM05D004052 ORTHO05D004694 2.0e-132 476.1 297 100.0
QL04p070259 Quercus lobata HOM05D004052 ORTHO05D004694 1.8e-45 187.2 395 40.8
Ca_03392_v3 Cicer arietinum L. HOM05D004052 ORTHO05D004694 2.9e-43 179.9 373 41.0
Ca_29679_v3 Cicer arietinum L. HOM05D004052 ORTHO05D004694 2.9e-43 179.9 373 41.0
Migut.H02078 Erythranthe guttata HOM05D004052 ORTHO05D004694 1.5e-42 177.6 331 44.4
SGA_v2.0_scaffold4G02131 Striga asiatica HOM05D004052 ORTHO05D004694 3.2e-42 176.4 293 53.2
Dinv13312 Davidia involucrata HOM05D004052 ORTHO05D004694 9.4e-42 174.9 372 48.4
Medtr2g070730 Medicago truncatula HOM05D004052 ORTHO05D004694 4.7e-41 172.6 390 44.4
Atru.chr2.1894 Acer truncatum HOM05D004052 ORTHO05D004694 1.4e-40 171.0 395 42.3
Ciclev10020573m.g Citrus clementina HOM05D004052 ORTHO05D004694 3.0e-40 169.9 395 44.1
MSTRG.12848 Avicennia marina HOM05D004052 ORTHO05D004694 5.2e-40 169.1 400 39.2
Gohir.D01G029700 Gossypium hirsutum HOM05D004052 ORTHO05D004694 6.8e-40 168.7 395 43.5
Phvul.005G060700 Phaseolus vulgaris HOM05D004052 ORTHO05D004694 8.8e-40 168.3 391 43.0
FAN21G2550 Fragaria x ananassa HOM05D004052 ORTHO05D004694 1.5e-39 167.5 391 38.4
FvH4_3g16600 Fragaria vesca HOM05D004052 ORTHO05D004694 3.4e-39 166.4 391 38.1
PGSC0003DMG400027647 Solanum tuberosum HOM05D004052 ORTHO05D004694 3.4e-39 166.4 373 48.8
Prupe.4G148800 Prunus persica HOM05D004052 ORTHO05D004694 5.7e-39 165.6 397 38.0
Sabra16G0248900 Salix brachista HOM05D004052 ORTHO05D004694 5.7e-39 165.6 374 38.8
Thecc.07G146300 Theobroma cacao HOM05D004052 ORTHO05D004694 5.7e-39 165.6 395 47.3
Gorai.002G038800 Gossypium raimondii HOM05D004052 ORTHO05D004694 7.5e-39 165.2 397 42.8
Nitab4.5_0000639g0180 Nicotiana tabacum HOM05D004052 ORTHO05D004694 9.7e-39 164.9 348 49.1
GSVIVG01038086001 Vitis vinifera HOM05D004052 ORTHO05D004694 1.3e-38 164.5 369 39.6
FAN16G0069 Fragaria x ananassa HOM05D004052 ORTHO05D004694 2.2e-38 163.7 391 38.1
CAN.G1003.5 Capsicum annuum HOM05D004052 ORTHO05D004694 2.8e-38 163.3 379 47.2
HanXRQChr10g0305751 Helianthus annuus HOM05D004052 ORTHO05D004694 2.8e-38 163.3 374 38.0
Cpa.g.sc77.96 Carica papaya HOM05D004052 ORTHO05D004694 3.7e-38 162.9 372 37.4
Potri.001G377900 Populus trichocarpa HOM05D004052 ORTHO05D004694 6.3e-38 162.2 383 38.1
RcHm_v2.0_Chr5g0027741 Rosa chinensis HOM05D004052 ORTHO05D004694 6.3e-38 162.2 391 37.9
Lsat_1_v5_gn_5_125041 Lactuca sativa HOM05D004052 ORTHO05D004694 8.3e-38 161.8 368 44.3
Gohir.A01G041900 Gossypium hirsutum HOM05D004052 ORTHO05D004694 1.4e-37 161.0 395 46.3
Glyma.13G259200 Glycine max HOM05D004052 ORTHO05D004694 2.4e-37 160.2 388 42.0
MD05G1208600 Malus domestica HOM05D004052 ORTHO05D004694 2.4e-37 160.2 396 37.9
FAN11G2946 Fragaria x ananassa HOM05D004052 ORTHO05D004694 4.1e-37 159.5 388 37.4
arahy.Tifrunner.gnm1.ann1.15VG0N Arachis hypogaea HOM05D004052 ORTHO05D004694 5.3e-37 159.1 397 46.9
Actinidia35175 Actinidia chinensis HOM05D004052 ORTHO05D004694 1.2e-36 157.9 373 48.0
Oeu001302.1 Olea europaea HOM05D004052 ORTHO05D004694 1.2e-36 157.9 423 34.5
Manes.15G101600 Manihot esculenta HOM05D004052 ORTHO05D004694 2.0e-36 157.1 392 36.7
CSS0033427 Camellia sinensis var. sinensis HOM05D004052 ORTHO05D004694 2.7e-36 156.8 395 46.8
Ca_01645_v3 Cicer arietinum L. HOM05D004052 ORTHO05D004694 2.7e-36 156.8 373 37.8
Actinidia04591 Actinidia chinensis HOM05D004052 ORTHO05D004694 7.7e-36 155.2 381 46.2
Sopen07g029990 Solanum pennellii HOM05D004052 ORTHO05D004694 1.3e-35 154.5 373 47.7
Nn3g20784 Nelumbo nucifera HOM05D004052 ORTHO05D004694 1.7e-35 154.1 394 35.5
arahy.Tifrunner.gnm1.ann1.SLVF1G Arachis hypogaea HOM05D004052 ORTHO05D004694 2.2e-35 153.7 397 46.6
Nitab4.5_0001662g0050 Nicotiana tabacum HOM05D004052 ORTHO05D004694 2.2e-35 153.7 382 42.9
Actinidia12841 Actinidia chinensis HOM05D004052 ORTHO05D004694 8.5e-35 151.8 380 44.5
vmacro09432 Vaccinium macrocarpon HOM05D004052 ORTHO05D004694 8.5e-35 151.8 383 44.1
CANSAT94G0014 Cannabis sativa HOM05D004052 ORTHO05D004694 1.5e-34 151.0 393 41.0
Psat1g001080 Pisum sativum HOM05D004052 ORTHO05D004694 1.9e-34 150.6 375 47.5
Solyc07g056650.4 Solanum lycopersicum HOM05D004052 ORTHO05D004694 1.9e-34 150.6 375 46.9
MD10G1195100 Malus domestica HOM05D004052 ORTHO05D004694 2.5e-34 150.2 390 38.7
TAR629G3304 Trochodendron aralioides HOM05D004052 ORTHO05D004694 2.5e-34 150.2 382 36.9
Lalb_Chr25g0285401 Lupinus albus HOM05D004052 ORTHO05D004694 3.2e-34 149.8 388 44.6
TPR.G22987 Trifolium pratense HOM05D004052 ORTHO05D004694 7.2e-34 148.7 387 47.0
Dinv26667 Davidia involucrata HOM05D004052 ORTHO05D004694 9.4e-34 148.3 334 47.0
Peaxi162Scf00111g00086 Petunia axillaris HOM05D004052 ORTHO05D004694 9.4e-34 148.3 391 43.5
RhsimUnG0204400 Rhododendron simsii HOM05D004052 ORTHO05D004694 9.4e-34 148.3 378 45.5
ECA234G3832 Erigeron canadensis HOM05D004052 ORTHO05D004694 1.2e-33 147.9 375 37.9
Lj3g0022433 Lotus japonicus HOM05D004052 ORTHO05D004694 1.2e-33 147.9 395 39.5
Rhsim06G0184900 Rhododendron simsii HOM05D004052 ORTHO05D004694 1.2e-33 147.9 372 43.5
Glyma.15G248900 Glycine max HOM05D004052 ORTHO05D004694 1.6e-33 147.5 391 39.9
Hma1.2p1_1456F.1_g284600 Hydrangea macrophylla HOM05D004052 ORTHO05D004694 2.1e-33 147.1 363 45.7
Cc05_g10320 Coffea canephora HOM05D004052 ORTHO05D004694 2.7e-33 146.7 398 46.0
Manes.03G091016 Manihot esculenta HOM05D004052 ORTHO05D004694 3.6e-33 146.4 394 34.8
Duzib213G0683 Durio zibethinus HOM05D004052 ORTHO05D004694 6.1e-33 145.6 390 45.9
Nn4g26569 Nelumbo nucifera HOM05D004052 ORTHO05D004694 6.1e-33 145.6 394 35.3
THA.LOC104812292 Tarenaya hassleriana HOM05D004052 ORTHO05D004694 6.1e-33 145.6 366 47.8
Eucgr.L01015 Eucalyptus grandis HOM05D004052 ORTHO05D004694 1.0e-32 144.8 344 36.9
MBI10_g30421_MAGBIO Magnolia biondii HOM05D004052 ORTHO05D004694 1.0e-32 144.8 390 35.1
HanXRQChr12g0373561 Helianthus annuus HOM05D004052 ORTHO05D004694 5.2e-32 142.5 366 38.5
TPR.G26614 Trifolium pratense HOM05D004052 ORTHO05D004694 6.8e-32 142.1 386 46.9
Haze_08491 Corylus avellana HOM05D004052 ORTHO05D004694 8.8e-32 141.7 445 37.8
Eucgr.L01921 Eucalyptus grandis HOM05D004052 ORTHO05D004694 8.8e-32 141.7 371 35.0
vmacro12015 Vaccinium macrocarpon HOM05D004052 ORTHO05D004694 8.8e-32 141.7 354 44.9
Migut.M00589 Erythranthe guttata HOM05D004052 ORTHO05D004694 4.4e-31 139.4 384 41.4
PGSC0003DMG400007841 Solanum tuberosum HOM05D004052 ORTHO05D004694 5.7e-31 139.0 347 47.6
unitig_747.g21598 Utricularia gibba HOM05D004052 ORTHO05D004694 5.7e-31 139.0 330 46.1
Eucgr.E02731 Eucalyptus grandis HOM05D004052 ORTHO05D004694 7.5e-31 138.7 351 35.3
COL.COLO4_17418 Corchorus olitorius HOM05D004052 ORTHO05D004694 1.3e-30 137.9 383 46.0
AL2G38800 Arabidopsis lyrata HOM05D004052 ORTHO05D004694 2.2e-30 137.1 340 44.1
BcaC07g41402 Brassica carinata HOM05D004052 ORTHO05D004694 2.2e-30 137.1 354 45.5
CiPaw.12G045700 Carya illinoinensis HOM05D004052 ORTHO05D004694 2.8e-30 136.7 394 44.9
MSTRG.6718 Avicennia marina HOM05D004052 ORTHO05D004694 4.8e-30 136.0 392 41.6
Lj1A816T35 Lonicera japonica HOM05D004052 ORTHO05D004694 6.3e-30 135.6 385 45.5
PGR031G1077 Punica granatum HOM05D004052 ORTHO05D004694 8.3e-30 135.2 396 44.4
Eucgr.F03205 Eucalyptus grandis HOM05D004052 ORTHO05D004694 1.4e-29 134.4 395 44.3
BcaC05g25666 Brassica carinata HOM05D004052 ORTHO05D004694 1.8e-29 134.0 341 43.4
Nitab4.5_0000505g0150 Nicotiana tabacum HOM05D004052 ORTHO05D004694 1.8e-29 134.0 343 48.4
Duzib268G0054 Durio zibethinus HOM05D004052 ORTHO05D004694 2.4e-29 133.7 395 44.3
Aa31LG7G1980 Aethionema arabicum HOM05D004052 ORTHO05D004694 3.1e-29 133.3 354 41.5
AT1G78430 Arabidopsis thaliana HOM05D004052 ORTHO05D004694 9.1e-29 131.7 339 40.4
AL1G29350 Arabidopsis lyrata HOM05D004052 ORTHO05D004694 1.2e-28 131.3 357 43.7
BcaC07g41439 Brassica carinata HOM05D004052 ORTHO05D004694 1.6e-28 131.0 352 45.5
Ah.06g187480 Amaranthus hybridus HOM05D004052 ORTHO05D004694 2.7e-28 130.2 381 32.8
Sp1g15260 Schrenkiella parvula HOM05D004052 ORTHO05D004694 2.7e-28 130.2 361 43.8
Ah.04g163830 Amaranthus hybridus HOM05D004052 ORTHO05D004694 3.5e-28 129.8 378 34.7
A09p60580 Brassica napus HOM05D004052 ORTHO05D004694 3.5e-28 129.8 337 46.3
VMungo1080G1119 Vigna mungo HOM05D004052 ORTHO05D004694 3.5e-28 129.8 391 41.2
CARHR017680 Cardamine hirsuta HOM05D004052 ORTHO05D004694 4.5e-28 129.4 363 45.2
BraA09t41428Z Brassica rapa HOM05D004052 ORTHO05D004694 5.9e-28 129.0 337 46.9
C08p44040 Brassica napus HOM05D004052 ORTHO05D004694 1.0e-27 128.3 341 46.9
PSO675G8138 Papaver somniferum HOM05D004052 ORTHO05D004694 1.3e-27 127.9 381 34.1
Hund02320 Selenicereus undatus HOM05D004052 ORTHO05D004694 2.3e-27 127.1 391 42.5
Sc03g0007700 Simmondsia chinensis HOM05D004052 ORTHO05D004694 5.0e-27 125.9 355 44.2
Solyc12g011360.2 Solanum lycopersicum HOM05D004052 ORTHO05D004694 5.0e-27 125.9 347 46.1
BolC5t30258H Brassica oleracea HOM05D004052 ORTHO05D004694 6.6e-27 125.6 335 44.8
Aa31LG4G2530 Aethionema arabicum HOM05D004052 ORTHO05D004694 8.6e-27 125.2 322 36.0
EL10Ac4g08490 Beta vulgaris HOM05D004052 ORTHO05D004694 1.1e-26 124.8 391 32.5
BolC8t51952H Brassica oleracea HOM05D004052 ORTHO05D004694 1.1e-26 124.8 348 45.1
Thhalv10019440m.g Eutrema salsugineum HOM05D004052 ORTHO05D004694 1.5e-26 124.4 335 46.9
Cfa019455 Carpinus fangiana HOM05D004052 ORTHO05D004694 1.9e-26 124.0 436 38.8
Sopen12g006690 Solanum pennellii HOM05D004052 ORTHO05D004694 5.5e-26 122.5 347 45.5
PSO541G0468 Papaver somniferum HOM05D004052 ORTHO05D004694 9.5e-26 121.7 379 32.5
BraA06t24462Z Brassica rapa HOM05D004052 ORTHO05D004694 2.1e-25 120.6 344 45.1
Aqoxy7G03971 Aquilegia oxysepala HOM05D004052 ORTHO05D004694 2.8e-25 120.2 399 33.6
A06p13030 Brassica napus HOM05D004052 ORTHO05D004694 3.6e-25 119.8 346 36.4
C05p15490 Brassica napus HOM05D004052 ORTHO05D004694 4.7e-25 119.4 347 43.8
AT1G17140 Arabidopsis thaliana HOM05D004052 ORTHO05D004694 6.1e-25 119.0 357 45.7
Gohir.A07G155810 Gossypium hirsutum HOM05D004052 ORTHO05D004694 6.1e-25 119.0 374 40.9
Nitab4.5_0002495g0040 Nicotiana tabacum HOM05D004052 ORTHO05D004694 8.0e-25 118.6 378 45.5
DCAR_019621 Daucus carota HOM05D004052 ORTHO05D004694 1.0e-24 118.2 411 32.6
BolC6t38209H Brassica oleracea HOM05D004052 ORTHO05D004694 1.8e-24 117.5 329 37.7
AUR62037969 Chenopodium quinoa HOM05D004052 ORTHO05D004694 2.3e-24 117.1 392 37.2
A07p27520 Brassica napus HOM05D004052 ORTHO05D004694 4.0e-24 116.3 328 37.2
Oeu020015.2 Olea europaea HOM05D004052 ORTHO05D004694 4.0e-24 116.3 349 40.7
BraA07t30394Z Brassica rapa HOM05D004052 ORTHO05D004694 6.8e-24 115.5 328 37.2
Gohir.A04G046520 Gossypium hirsutum HOM05D004052 ORTHO05D004694 6.8e-24 115.5 379 34.0
C06p30460 Brassica napus HOM05D004052 ORTHO05D004694 1.2e-23 114.8 335 39.1
Eucgr.E02738 Eucalyptus grandis HOM05D004052 ORTHO05D004694 1.2e-23 114.8 329 34.0
THA.LOC104808079 Tarenaya hassleriana HOM05D004052 ORTHO05D004694 2.0e-23 114.0 353 46.2
BcaB03g13016 Brassica carinata HOM05D004052 ORTHO05D004694 2.6e-23 113.6 344 46.8
unitig_46.g18300 Utricularia gibba HOM05D004052 ORTHO05D004694 9.8e-23 111.7 348 32.8
BcaB02g07171 Brassica carinata HOM05D004052 ORTHO05D004694 1.7e-22 110.9 338 41.1
Peaxi162Scf00000g00572 Petunia axillaris HOM05D004052 ORTHO05D004694 1.7e-22 110.9 357 44.5
CARHR071950 Cardamine hirsuta HOM05D004052 ORTHO05D004694 2.8e-22 110.2 343 44.3
Gorai.009G359700 Gossypium raimondii HOM05D004052 ORTHO05D004694 4.9e-22 109.4 375 34.7
SGA_v2.0_scaffold73G24348 Striga asiatica HOM05D004052 ORTHO05D004694 9.2e-21 105.1 382 42.9
Lj8P142T42 Lonicera japonica HOM05D004052 ORTHO05D004694 1.3e-19 101.3 217 49.3
Medtr8g008740 Medicago truncatula HOM05D000280 ORTHO05D000632 1.7e-19 100.9 101 61.4
Carub.0002s2533 Capsella rubella HOM05D004052 ORTHO05D004694 2.9e-19 100.1 340 45.3
TAR627G0253 Trochodendron aralioides HOM05D004052 ORTHO05D004694 6.6e-19 99.0 327 30.9
CDE02G2317 Ceratophyllum demersum HOM05D004052 ORTHO05D004694 1.1e-18 98.2 357 35.3
FAN25G3263 Fragaria x ananassa HOM05D004052 ORTHO05D004694 1.5e-18 97.8 108 57.4
Thhalv10008080m.g Eutrema salsugineum HOM05D004052 ORTHO05D004694 1.2e-17 94.7 361 42.9
Oeu006133.1 Olea europaea HOM05D004052 ORTHO05D004694 4.7e-17 92.8 324 32.4
Carub.0001s1687 Capsella rubella HOM05D004052 ORTHO05D004694 1.0e-16 91.7 358 43.0
CDE10G0657 Ceratophyllum demersum HOM05D004052 ORTHO05D004694 2.0e-15 87.4 350 33.1
CDE10G0568 Ceratophyllum demersum HOM05D004052 ORTHO05D004694 9.8e-15 85.1 348 42.5
BcaC07g38832 Brassica carinata HOM05D004052 ORTHO05D004694 1.3e-14 84.7 355 41.7
MD14G1047200 Malus domestica HOM05D004052 ORTHO05D004694 2.2e-14 84.0 178 38.2
BolC8t49398H Brassica oleracea HOM05D004052 ORTHO05D004694 1.4e-13 81.3 334 42.2
C08p17720 Brassica napus HOM05D004052 ORTHO05D004694 3.2e-13 80.1 332 42.2
BcaB07g34049 Brassica carinata HOM05D004052 ORTHO05D004694 9.2e-13 78.6 351 41.9
HPP92_020289 Vanilla planifolia HOM05D004052 ORTHO05D004694 3.1e-08 63.5 386 31.9
ATR0730G143 Amborella trichopoda HOM05D004052 ORTHO05D004694 1.5e-07 61.2 102 44.1
Os01g0757600 Oryza sativa ssp. japonica HOM05D004052 ORTHO05D004694 1.7e-06 57.8 103 38.8
Zm00001eb152670 Zea mays HOM05D004052 ORTHO05D004694 4.9e-06 56.2 406 31.8
A08p31110 Brassica napus HOM05D004052 ORTHO05D004694 6.4e-06 55.8 328 41.5
BraA08t35037Z Brassica rapa HOM05D004052 ORTHO05D004694 6.4e-06 55.8 328 41.5


User provided reference genes

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