Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold130G34221 Striga asiatica HOM05D004764 ORTHO05D005580 5.8e-198 694.1 370 100.0
Migut.F01566 Erythranthe guttata HOM05D004764 ORTHO05D005580 1.0e-141 507.3 319 84.6
MSTRG.8305 Avicennia marina HOM05D004764 ORTHO05D005580 1.3e-136 490.3 318 81.4
SalBow6G7043 Salvia bowleyana HOM05D004764 ORTHO05D005580 2.6e-134 482.6 318 80.2
CAN.G2159.1 Capsicum annuum HOM05D004764 ORTHO05D005580 3.6e-131 472.2 330 76.4
Nitab4.5_0012769g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.0e-130 470.7 318 78.0
Sopen03g006610 Solanum pennellii HOM05D004764 ORTHO05D005580 3.0e-130 469.2 318 78.0
vmacro01597 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 6.7e-130 468.0 318 77.0
Nitab4.5_0000344g0160 Nicotiana tabacum HOM05D004764 ORTHO05D005580 2.5e-129 466.1 318 77.7
CAN.G308.66 Capsicum annuum HOM05D004764 ORTHO05D005580 7.4e-129 464.5 318 77.4
CSS0016003 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 8.2e-128 461.1 318 75.5
Solyc04g071730.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 8.2e-128 461.1 318 76.4
Cc02_g20660 Coffea canephora HOM05D004764 ORTHO05D005580 1.1e-127 460.7 318 76.7
Dinv20933 Davidia involucrata HOM05D004764 ORTHO05D005580 1.4e-127 460.3 318 77.0
Dinv21011 Davidia involucrata HOM05D004764 ORTHO05D005580 1.4e-127 460.3 318 77.0
PGSC0003DMG400006372 Solanum tuberosum HOM05D004764 ORTHO05D005580 1.4e-127 460.3 318 76.4
Sopen04g027710 Solanum pennellii HOM05D004764 ORTHO05D005580 2.4e-127 459.5 318 76.1
CSS0010099 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 3.1e-127 459.1 318 75.2
Lj1C949T1 Lonicera japonica HOM05D004764 ORTHO05D005580 2.6e-126 456.1 318 77.4
Lj1A432T27 Lonicera japonica HOM05D004764 ORTHO05D005580 4.5e-126 455.3 318 76.1
Hund16007 Selenicereus undatus HOM05D004764 ORTHO05D005580 2.2e-125 453.0 318 75.5
Ciclev10032191m.g Citrus clementina HOM05D004764 ORTHO05D005580 8.5e-125 451.1 318 73.9
Manes.10G019100 Manihot esculenta HOM05D004764 ORTHO05D005580 1.4e-124 450.3 318 74.8
HanXRQChr12g0369401 Helianthus annuus HOM05D004764 ORTHO05D005580 7.2e-124 448.0 318 74.2
Ciclev10016032m.g Citrus clementina HOM05D004764 ORTHO05D005580 2.1e-123 446.4 318 73.0
Atru.chr12.324 Acer truncatum HOM05D004764 ORTHO05D005580 2.7e-123 446.0 318 73.0
Cfa017589 Carpinus fangiana HOM05D004764 ORTHO05D005580 2.7e-123 446.0 318 73.3
Rhsim09G0171300 Rhododendron simsii HOM05D004764 ORTHO05D005580 2.7e-123 446.0 362 67.4
Potri.010G194300 Populus trichocarpa HOM05D004764 ORTHO05D005580 3.6e-123 445.7 318 73.9
TWI73G0601 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 3.6e-123 445.7 318 74.2
Atru.chr12.285 Acer truncatum HOM05D004764 ORTHO05D005580 1.0e-122 444.1 318 72.6
MD02G1196300 Malus domestica HOM05D004764 ORTHO05D005580 1.8e-122 443.4 318 73.6
TWI09G1390 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 1.8e-122 443.4 318 73.9
COL.COLO4_25609 Corchorus olitorius HOM05D004764 ORTHO05D005580 1.5e-121 440.3 318 74.2
Duzib106G0320 Durio zibethinus HOM05D004764 ORTHO05D005580 1.5e-121 440.3 318 74.2
ECA233G3311 Erigeron canadensis HOM05D004764 ORTHO05D005580 7.4e-121 438.0 321 73.5
Prupe.2G152400 Prunus persica HOM05D004764 ORTHO05D005580 7.4e-121 438.0 318 72.6
QL07p043722 Quercus lobata HOM05D004764 ORTHO05D005580 9.7e-121 437.6 317 72.2
Ca_25497_v3 Cicer arietinum L. HOM05D004764 ORTHO05D005580 1.3e-120 437.2 318 73.3
GSVIVG01016388001 Vitis vinifera HOM05D004764 ORTHO05D005580 1.7e-120 436.8 318 72.6
Peaxi162Scf00064g00126 Petunia axillaris HOM05D004764 ORTHO05D005580 2.2e-120 436.4 318 73.9
THA.LOC104816565 Tarenaya hassleriana HOM05D004764 ORTHO05D005580 3.7e-120 435.6 318 72.0
Medtr6g084580 Medicago truncatula HOM05D004764 ORTHO05D005580 4.8e-120 435.3 318 73.3
DCAR_011775 Daucus carota HOM05D004764 ORTHO05D005580 1.1e-119 434.1 318 73.3
Peaxi162Scf00010g01114 Petunia axillaris HOM05D004764 ORTHO05D005580 1.8e-119 433.3 318 73.6
Psat1g037840 Pisum sativum HOM05D004764 ORTHO05D005580 1.8e-119 433.3 318 73.0
Cpa.g.sc19.234 Carica papaya HOM05D004764 ORTHO05D005580 2.4e-119 433.0 318 73.0
Thecc.10G137500 Theobroma cacao HOM05D004764 ORTHO05D005580 2.4e-119 433.0 318 74.2
TAR623G1788 Trochodendron aralioides HOM05D004764 ORTHO05D005580 1.2e-118 430.6 318 72.3
TAR369G1012 Trochodendron aralioides HOM05D004764 ORTHO05D005580 2.0e-118 429.9 328 70.4
CANSAT21G1253 Cannabis sativa HOM05D004764 ORTHO05D005580 2.6e-118 429.5 318 71.1
Sed0006926 Sechium edule HOM05D004764 ORTHO05D005580 2.6e-118 429.5 318 73.3
Gorai.011G278800 Gossypium raimondii HOM05D004764 ORTHO05D005580 3.5e-118 429.1 318 72.3
Glyma.09G184900 Glycine max HOM05D004764 ORTHO05D005580 5.9e-118 428.3 318 71.7
Gohir.A10G228400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 7.7e-118 427.9 318 72.3
Lsat_1_v5_gn_8_14200 Lactuca sativa HOM05D004764 ORTHO05D005580 7.7e-118 427.9 315 72.1
MD07G1124900 Malus domestica HOM05D004764 ORTHO05D005580 7.7e-118 427.9 318 70.8
Lj2g0017902 Lotus japonicus HOM05D004764 ORTHO05D005580 1.0e-117 427.6 318 71.7
VMungo0464G2049 Vigna mungo HOM05D004764 ORTHO05D005580 1.0e-117 427.6 318 70.1
CiPaw.10G131000 Carya illinoinensis HOM05D004764 ORTHO05D005580 1.3e-117 427.2 318 70.8
Lj1g0004796 Lotus japonicus HOM05D004764 ORTHO05D005580 5.0e-117 425.2 318 72.0
MELO3C008270.2 Cucumis melo HOM05D004764 ORTHO05D005580 6.5e-117 424.9 318 71.1
Aa31LG10G3070 Aethionema arabicum HOM05D004764 ORTHO05D005580 5.5e-116 421.8 320 70.9
Phvul.004G157700 Phaseolus vulgaris HOM05D004764 ORTHO05D005580 7.2e-116 421.4 318 70.1
Sp1g38390 Schrenkiella parvula HOM05D004764 ORTHO05D005580 9.4e-116 421.0 318 69.8
PGR142G0534 Punica granatum HOM05D004764 ORTHO05D005580 2.7e-115 419.5 319 71.2
unitig_0.g2163 Utricularia gibba HOM05D004764 ORTHO05D005580 4.7e-115 418.7 333 68.5
AL1G59680 Arabidopsis lyrata HOM05D004764 ORTHO05D005580 8.0e-115 417.9 319 69.9
EL10Ac2g04766 Beta vulgaris HOM05D004764 ORTHO05D005580 1.0e-114 417.5 318 71.7
CARHR041910 Cardamine hirsuta HOM05D004764 ORTHO05D005580 1.4e-114 417.2 318 68.6
AT1G51740 Arabidopsis thaliana HOM05D004764 ORTHO05D005580 2.3e-114 416.4 319 69.9
Thhalv10011542m.g Eutrema salsugineum HOM05D004764 ORTHO05D005580 2.3e-114 416.4 318 69.2
ClCG11G006420 Citrullus lanatus HOM05D004764 ORTHO05D005580 8.8e-114 414.5 318 70.1
Eucgr.G03020 Eucalyptus grandis HOM05D004764 ORTHO05D005580 2.0e-113 413.3 318 71.1
Lalb_Chr22g0353041 Lupinus albus HOM05D004764 ORTHO05D005580 3.3e-113 412.5 318 70.1
BcaB02g11053 Brassica carinata HOM05D004764 ORTHO05D005580 7.4e-113 411.4 320 68.1
Lalb_Chr14g0371191 Lupinus albus HOM05D004764 ORTHO05D005580 7.4e-113 411.4 318 70.4
arahy.Tifrunner.gnm1.ann1.BR1H5V Arachis hypogaea HOM05D004764 ORTHO05D005580 9.7e-113 411.0 318 68.9
Ah.16g104720 Amaranthus hybridus HOM05D004764 ORTHO05D005580 1.3e-112 410.6 321 69.2
RcHm_v2.0_Chr1g0351821 Rosa chinensis HOM05D004764 ORTHO05D005580 1.7e-112 410.2 318 69.2
FAN10G3109 Fragaria x ananassa HOM05D004764 ORTHO05D005580 2.2e-112 409.8 322 68.9
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 3.7e-112 409.1 321 68.8
Solyc03g033850.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 1.1e-111 407.5 281 77.2
FvH4_7g12790 Fragaria vesca HOM05D004764 ORTHO05D005580 1.8e-111 406.8 318 68.6
Aqoxy7G01280 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 3.1e-111 406.0 318 68.2
Ah.02g115950 Amaranthus hybridus HOM05D004764 ORTHO05D005580 7.0e-111 404.8 318 67.6
Carub.0001s4061 Capsella rubella HOM05D004764 ORTHO05D005580 7.0e-111 404.8 319 68.0
Aqoxy1G00756 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 2.0e-110 403.3 319 67.1
Lsat_1_v5_gn_9_12660 Lactuca sativa HOM05D004764 ORTHO05D005580 7.2e-108 394.8 317 66.9
Oeu013001.1 Olea europaea HOM05D004764 ORTHO05D005580 2.1e-107 393.3 280 75.4
arahy.Tifrunner.gnm1.ann1.V0Z2W7 Arachis hypogaea HOM05D004764 ORTHO05D005580 2.7e-107 392.9 318 67.3
Actinidia00927 Actinidia chinensis HOM05D004764 ORTHO05D005580 4.7e-107 392.1 320 67.8
CsaV3_6G001590 Cucumis sativus L. HOM05D004764 ORTHO05D005580 1.4e-106 390.6 293 71.3
BolC6t35797H Brassica oleracea HOM05D004764 ORTHO05D005580 1.8e-106 390.2 302 70.2
FAN01G0026 Fragaria x ananassa HOM05D004764 ORTHO05D005580 3.0e-106 389.4 353 61.5
PSO384G2817 Papaver somniferum HOM05D004764 ORTHO05D005580 5.2e-106 388.7 319 65.5
BraA06t23434Z Brassica rapa HOM05D004764 ORTHO05D005580 6.8e-106 388.3 302 69.2
BcaB07g33630 Brassica carinata HOM05D004764 ORTHO05D005580 8.8e-106 387.9 305 69.5
A06p02240 Brassica napus HOM05D004764 ORTHO05D005580 1.5e-105 387.1 302 68.9
Gohir.D10G242400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 2.0e-105 386.7 286 73.4
PSO585G0029 Papaver somniferum HOM05D004764 ORTHO05D005580 9.8e-105 384.4 319 63.9
Zm00001eb429110 Zea mays HOM05D004764 ORTHO05D005580 2.2e-104 383.3 319 65.8
Os04g0530400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 2.7e-102 376.3 318 63.5
Os12g0154400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 3.5e-102 375.9 318 63.2
BcaC08g43344 Brassica carinata HOM05D004764 ORTHO05D005580 8.5e-101 371.3 294 68.7
C06p07040 Brassica napus HOM05D004764 ORTHO05D005580 1.5e-100 370.5 294 68.4
Haze_20561 Corylus avellana HOM05D004764 ORTHO05D005580 1.6e-99 367.1 270 70.4
ATR0736G027 Amborella trichopoda HOM05D004764 ORTHO05D005580 6.1e-99 365.2 322 62.1
Sc11g0007530 Simmondsia chinensis HOM05D004764 ORTHO05D005580 4.0e-98 362.5 270 70.7
Sabra10G0149400 Salix brachista HOM05D004764 ORTHO05D005580 5.2e-98 362.1 290 66.2
Lj1C433T7 Lonicera japonica HOM05D004764 ORTHO05D005580 1.8e-95 353.6 256 72.3
AUR62041843 Chenopodium quinoa HOM05D004764 ORTHO05D005580 3.5e-94 349.4 318 61.6
FAN06G0806 Fragaria x ananassa HOM05D004764 ORTHO05D005580 5.9e-94 348.6 267 69.7
SHI03532 Sapria himalayana HOM05D004764 ORTHO05D005580 9.5e-92 341.3 343 56.9
Nitab4.5_0011923g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.4e-90 337.4 318 60.4
Glyma.07G091000 Glycine max HOM05D004764 ORTHO05D005580 1.5e-89 334.0 318 61.0
Nn5g27977 Nelumbo nucifera HOM05D004764 ORTHO05D005580 1.5e-89 334.0 318 61.3
AUR62032348 Chenopodium quinoa HOM05D004764 ORTHO05D005580 3.4e-89 332.8 274 65.3
SEGI_31890 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 1.7e-88 330.5 320 57.5
vmacro10073 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 2.7e-86 323.2 230 73.9
Lj1C435T9 Lonicera japonica HOM05D004764 ORTHO05D005580 1.1e-84 317.8 237 70.0
HPP92_027811 Vanilla planifolia HOM05D004764 ORTHO05D005580 4.9e-80 302.4 318 55.3
Nitab4.5_0002828g0150 Nicotiana tabacum HOM05D004764 ORTHO05D005580 3.0e-77 293.1 391 48.8
Potri.008G063100 Populus trichocarpa HOM05D004764 ORTHO05D005580 1.1e-74 284.6 227 63.9
Mapoly0024s0083 Marchantia polymorpha HOM05D004764 ORTHO05D005580 2.0e-73 280.4 322 51.6
TPR.G27934 Trifolium pratense HOM05D004764 ORTHO05D005580 3.0e-69 266.5 748 31.1
SMO356G0668 Selaginella moellendorffii HOM05D004764 ORTHO05D005580 8.1e-67 258.5 314 49.0
Pp3c6_24680 Physcomitrium patens HOM05D004764 ORTHO05D005580 3.1e-66 256.5 322 46.9
Oeu032670.1 Olea europaea HOM05D004764 ORTHO05D005580 3.5e-62 243.0 182 76.9
AagrBONN_evm.TU.Sc2ySwM_368.928 Anthoceros agrestis HOM05D004764 ORTHO05D005580 2.9e-56 223.4 300 46.0
CDE09G0086 Ceratophyllum demersum HOM05D004764 ORTHO05D005580 5.6e-52 209.1 192 63.0
C06p13300 Brassica napus HOM05D001194 ORTHO05D005580 4.2e-47 193.0 274 49.6
Actinidia27825 Actinidia chinensis HOM05D004764 ORTHO05D005580 5.4e-47 192.6 150 71.3
Zm00001eb427200 Zea mays HOM05D004764 ORTHO05D005580 1.7e-45 187.6 160 67.5
PGSC0003DMG400022548 Solanum tuberosum HOM05D004764 ORTHO05D005580 3.9e-45 186.4 121 84.3
Glyma.17G199500 Glycine max HOM05D004764 ORTHO05D005580 6.4e-40 169.1 117 78.6
PSO339G3467 Papaver somniferum HOM05D004764 ORTHO05D005580 3.9e-37 159.8 151 60.9
Sabra08G0046500 Salix brachista HOM05D004764 ORTHO05D005580 1.4e-34 151.4 252 40.1
BolC6t36490H Brassica oleracea HOM05D001194 ORTHO05D000015 5.3e-34 149.4 275 42.9
HPP92_004405 Vanilla planifolia HOM05D004764 ORTHO05D005580 1.2e-33 148.3 121 60.3
MCO05G144 Micromonas commoda HOM05D004764 ORTHO05D005580 2.1e-30 137.5 311 33.1
vmacro10074 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 3.7e-27 126.7 110 63.6
BcaC08g43937 Brassica carinata HOM05D001194 ORTHO05D004786 8.2e-27 125.6 135 60.7
Eucgr.L03566 Eucalyptus grandis HOM05D004764 ORTHO05D005580 1.1e-26 125.2 91 69.2
vmacro10891 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 3.4e-25 120.2 153 53.6
CBR_g29687 Chara braunii HOM05D004764 ORTHO05D005580 1.3e-24 118.2 93 66.7
BcaC08g43936 Brassica carinata HOM05D004764 ORTHO05D005580 1.9e-23 114.4 99 61.6
Actinidia13909 Actinidia chinensis HOM05D004764 ORTHO05D005580 1.0e-21 108.6 110 57.3
SEGI_41058 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 7.4e-20 102.4 108 50.9
Cre17.g711450 Chlamydomonas reinhardtii HOM05D004764 ORTHO05D005580 3.1e-18 97.1 397 26.7
Ah.16g102910 Amaranthus hybridus HOM05D004764 ORTHO05D005580 1.2e-14 85.1 62 74.2
Actinidia13908 Actinidia chinensis HOM05D004764 ORTHO05D005580 2.7e-14 84.0 69 63.8
Sc11g0007520 Simmondsia chinensis HOM05D004764 ORTHO05D005580 9.1e-10 68.9 92 45.7
PRCOL_00004763 Prasinoderma coloniale HOM05D001748 ORTHO05D001759 2.2e-08 64.3 131 34.4
BraA05t20843Z Brassica rapa HOM05D000051 ORTHO05D000015 5.5e-07 59.7 42 66.7


User provided reference genes

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