Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold12G06313 Striga asiatica HOM05D011572 ORTHO05D006517 1.2e-216 756.1 361 100.0
SGA_v2.0_scaffold45G17094 Striga asiatica HOM05D011572 ORTHO05D006517 4.8e-149 531.6 382 71.2
SGA_v2.0_scaffold206G41802 Striga asiatica HOM05D011572 ORTHO05D006517 1.8e-132 476.5 310 77.1
SGA_v2.0_scaffold41G15869 Striga asiatica HOM05D011572 ORTHO05D006517 5.4e-132 474.9 308 76.9
SGA_v2.0_scaffold365G50016 Striga asiatica HOM05D011572 ORTHO05D006517 5.9e-131 471.5 308 76.3
SGA_v2.0_scaffold22G09842 Striga asiatica HOM05D011572 ORTHO05D006517 5.0e-130 468.4 307 77.2
SGA_v2.0_scaffold502G52512 Striga asiatica HOM05D011572 ORTHO05D006517 7.9e-35 152.1 85 84.7
SGA_v2.0_scaffold9G04869 Striga asiatica HOM05D011572 ORTHO05D006517 5.2e-34 149.4 231 39.0
SGA_v2.0_scaffold229G43297 Striga asiatica HOM05D001343 ORTHO05D002008 1.0e-21 108.6 97 51.5
SGA_v2.0_scaffold187G40267 Striga asiatica HOM05D011572 ORTHO05D006517 1.6e-19 101.3 122 42.6
SalBow8G0214 Salvia bowleyana HOM05D031689 ORTHO05D006517 2.6e-17 94.0 228 30.7
SalBow7G0014 Salvia bowleyana HOM05D008082 ORTHO05D006517 2.7e-14 84.0 238 29.4
SGA_v2.0_scaffold6G03233 Striga asiatica HOM05D001567 ORTHO05D001409 5.9e-14 82.8 37 89.2
SalBow3G1743 Salvia bowleyana HOM05D000011 ORTHO05D006517 7.7e-14 82.4 259 29.3
Thecc.02G036800 Theobroma cacao HOM05D008181 ORTHO05D010459 2.3e-13 80.9 290 24.1
SalBow8G1323 Salvia bowleyana HOM05D008082 ORTHO05D006517 5.0e-13 79.7 212 27.8
SalBow2G3428 Salvia bowleyana HOM05D008082 ORTHO05D006517 6.5e-13 79.3 212 27.8
SalBow2G3580 Salvia bowleyana HOM05D008082 ORTHO05D006517 6.5e-13 79.3 212 27.8
Thecc.03G161900 Theobroma cacao HOM05D008181 ORTHO05D010459 6.5e-13 79.3 271 25.5
SalBow2G0951 Salvia bowleyana HOM05D015320 ORTHO05D006517 1.9e-12 77.8 193 29.5
Thecc.10G054600 Theobroma cacao HOM05D008181 ORTHO05D010459 1.9e-12 77.8 267 24.3
SalBow3G2968 Salvia bowleyana HOM05D031689 ORTHO05D006517 2.5e-12 77.4 261 27.6
SalBow4G1611 Salvia bowleyana HOM05D009699 ORTHO05D006517 2.5e-12 77.4 335 23.9
SalBow8G1146 Salvia bowleyana HOM05D000011 ORTHO05D000018 2.1e-11 74.3 138 33.3
Thecc.05G225100 Theobroma cacao HOM05D008181 ORTHO05D010459 2.1e-11 74.3 248 23.0
Thecc.09G272400 Theobroma cacao HOM05D008181 ORTHO05D010459 4.7e-11 73.2 147 28.6
Thecc.02G255800 Theobroma cacao HOM05D008181 ORTHO05D010459 3.0e-10 70.5 169 27.2
Thecc.05G178300 Theobroma cacao HOM05D008181 ORTHO05D010459 4.0e-10 70.1 205 25.9
SalBow1G5862 Salvia bowleyana HOM05D008082 ORTHO05D006517 8.8e-10 68.9 212 26.4
SalBow3G1893 Salvia bowleyana HOM05D008082 ORTHO05D006517 8.8e-10 68.9 218 26.1
SalBow1G3545 Salvia bowleyana HOM05D008082 ORTHO05D006517 1.2e-09 68.6 211 27.0
SalBow1G5422 Salvia bowleyana HOM05D010599 ORTHO05D006517 2.0e-09 67.8 143 29.4
SalBow1G7517 Salvia bowleyana HOM05D010599 ORTHO05D006517 2.0e-09 67.8 143 29.4
SalBow3G1903 Salvia bowleyana HOM05D008082 ORTHO05D006517 2.6e-09 67.4 186 29.6
SalBow4G1541 Salvia bowleyana HOM05D008082 ORTHO05D006517 4.4e-09 66.6 236 27.5
SalBow4G1733 Salvia bowleyana HOM05D008082 ORTHO05D006517 4.4e-09 66.6 261 26.1
SGA_v2.0_scaffold844G53665 Striga asiatica HOM05D213144 ORTHO05D006517 7.5e-09 65.9 35 80.0
Thecc.05G196700 Theobroma cacao HOM05D008181 ORTHO05D010459 7.5e-09 65.9 222 23.9
SalBow8G1284 Salvia bowleyana HOM05D008082 ORTHO05D006517 9.8e-09 65.5 244 25.0
Thecc.07G103000 Theobroma cacao HOM05D008181 ORTHO05D021025 9.8e-09 65.5 155 27.7
SalBow1G7044 Salvia bowleyana HOM05D009699 ORTHO05D006517 1.3e-08 65.1 147 29.9
SalBow8G4995 Salvia bowleyana HOM05D008082 ORTHO05D006517 1.3e-08 65.1 273 26.0
Thecc.04G033000 Theobroma cacao HOM05D008181 ORTHO05D010459 1.3e-08 65.1 128 28.1
SalBow3G2031 Salvia bowleyana HOM05D011572 ORTHO05D006517 1.7e-08 64.7 139 27.3
RcHm_v2.0_Chr2g0104761 Rosa chinensis HOM05D000529 ORTHO05D000472 2.2e-08 64.3 230 23.9
SalBow1G6861 Salvia bowleyana HOM05D010599 ORTHO05D006517 2.2e-08 64.3 212 24.5
SalBow2G1190 Salvia bowleyana HOM05D010599 ORTHO05D006517 2.2e-08 64.3 212 24.5
Thecc.02G178200 Theobroma cacao HOM05D008181 ORTHO05D021025 2.8e-08 63.9 89 32.6
SalBow6G2617 Salvia bowleyana HOM05D008082 ORTHO05D006517 3.7e-08 63.5 169 28.4
SalBow6G3176 Salvia bowleyana HOM05D010599 ORTHO05D006517 3.7e-08 63.5 213 26.3
SalBow7G1548 Salvia bowleyana HOM05D008082 ORTHO05D006517 3.7e-08 63.5 214 25.2
SalBow7G3634 Salvia bowleyana HOM05D008082 ORTHO05D006517 3.7e-08 63.5 214 25.2
SGA_v2.0_scaffold74G24697 Striga asiatica HOM05D011572 ORTHO05D006517 3.7e-08 63.5 66 50.0
Thecc.06G125800 Theobroma cacao HOM05D008181 ORTHO05D010459 4.9e-08 63.2 146 28.1
Thecc.09G213300 Theobroma cacao HOM05D008181 ORTHO05D010459 4.9e-08 63.2 170 27.1
Thecc.06G088800 Theobroma cacao HOM05D008181 ORTHO05D010459 6.3e-08 62.8 201 24.4
Thecc.05G143600 Theobroma cacao HOM05D008181 ORTHO05D021025 1.1e-07 62.0 108 31.5
CANSAT56G3729 Cannabis sativa HOM05D008058 ORTHO05D010564 1.8e-07 61.2 151 29.8
Thecc.10G099400 Theobroma cacao HOM05D008181 ORTHO05D010459 1.8e-07 61.2 201 26.9
CANSAT56G1907 Cannabis sativa HOM05D008058 ORTHO05D010564 4.1e-07 60.1 168 26.8
CANSAT64G2290 Cannabis sativa HOM05D008058 ORTHO05D010564 4.1e-07 60.1 236 25.8
SalBow8G4192 Salvia bowleyana HOM05D008082 ORTHO05D006517 4.1e-07 60.1 256 24.6
Thecc.01G399000 Theobroma cacao HOM05D008181 ORTHO05D010459 4.1e-07 60.1 205 23.4
Thecc.02G219700 Theobroma cacao HOM05D008181 ORTHO05D021025 4.1e-07 60.1 160 23.1
Thecc.06G009500 Theobroma cacao HOM05D008181 ORTHO05D010459 4.1e-07 60.1 112 29.5
Thecc.02G200300 Theobroma cacao HOM05D008181 ORTHO05D010459 5.4e-07 59.7 80 31.2
CANSAT64G1886 Cannabis sativa HOM05D008058 ORTHO05D010564 7.0e-07 59.3 151 29.8
SalBow6G6558 Salvia bowleyana HOM05D010599 ORTHO05D006517 7.0e-07 59.3 132 30.3
Thecc.10G115900 Theobroma cacao HOM05D008181 ORTHO05D010459 9.2e-07 58.9 128 25.8
CANSAT25G3402 Cannabis sativa HOM05D008058 ORTHO05D010564 2.0e-06 57.8 153 27.5
SalBow1G5610 Salvia bowleyana HOM05D010599 ORTHO05D006517 2.0e-06 57.8 113 29.2
SalBow3G1701 Salvia bowleyana HOM05D008082 ORTHO05D006517 2.7e-06 57.4 234 24.8
CANSAT64G1644 Cannabis sativa HOM05D008058 ORTHO05D010564 3.5e-06 57.0 151 27.2
SalBow5G0982 Salvia bowleyana HOM05D010871 ORTHO05D351333 3.5e-06 57.0 105 30.5
SalBow3G4447 Salvia bowleyana HOM05D010871 ORTHO05D006517 7.8e-06 55.8 191 26.7


User provided reference genes

Program Settings