Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold12G06299 Striga asiatica HOM05D003805 ORTHO05D004300 4.4e-53 211.1 110 100.0
SGA_v2.0_scaffold51G18830 Striga asiatica HOM05D003805 ORTHO05D004300 8.9e-30 133.7 105 64.8
SalBow8G4897 Salvia bowleyana HOM05D003805 ORTHO05D004300 1.5e-21 106.3 106 55.7
Migut.H02530 Erythranthe guttata HOM05D003805 ORTHO05D004300 4.9e-20 101.3 112 57.1
Oeu035340.1 Olea europaea HOM05D003805 ORTHO05D004300 6.4e-20 100.9 109 57.8
Nitab4.5_0000178g0350 Nicotiana tabacum HOM05D003805 ORTHO05D004300 3.2e-19 98.6 109 55.0
Peaxi162Scf00366g00711 Petunia axillaris HOM05D003805 ORTHO05D004300 3.2e-19 98.6 110 54.5
Oeu025181.1 Olea europaea HOM05D003805 ORTHO05D004300 4.6e-18 94.7 110 51.8
PGSC0003DMG400003519 Solanum tuberosum HOM05D003805 ORTHO05D004300 6.0e-18 94.4 106 55.7
Nitab4.5_0007490g0050 Nicotiana tabacum HOM05D003805 ORTHO05D004300 2.3e-17 92.4 109 52.3
CAN.G358.54 Capsicum annuum HOM05D003805 ORTHO05D004300 3.0e-17 92.0 106 53.8
Solyc02g085010.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 1.1e-16 90.1 114 50.0
Nitab4.5_0012261g0010 Nicotiana tabacum HOM05D003805 ORTHO05D004300 1.9e-16 89.4 106 53.8
Peaxi162Scf00366g00066 Petunia axillaris HOM05D003805 ORTHO05D004300 3.3e-16 88.6 109 50.5
Sopen02g029690 Solanum pennellii HOM05D003805 ORTHO05D004300 9.6e-16 87.0 107 52.3
Actinidia19196 Actinidia chinensis HOM05D002962 ORTHO05D003280 1.2e-15 86.7 105 48.6
Sopen02g029700 Solanum pennellii HOM05D003805 ORTHO05D004300 1.2e-15 86.7 114 49.1
PGSC0003DMG400003518 Solanum tuberosum HOM05D003805 ORTHO05D004300 1.6e-15 86.3 107 50.5
Solyc02g085005.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 2.8e-15 85.5 108 50.9
Hma1.2p1_1297F.1_g274110 Hydrangea macrophylla HOM05D003805 ORTHO05D004300 1.1e-14 83.6 109 49.5
Potri.007G022300 Populus trichocarpa HOM05D003805 ORTHO05D004300 1.1e-14 83.6 109 49.5
Nitab4.5_0000178g0280 Nicotiana tabacum HOM05D003805 ORTHO05D004300 1.4e-14 83.2 104 50.0
Peaxi162Scf00366g00073 Petunia axillaris HOM05D003805 ORTHO05D004300 2.4e-14 82.4 113 49.6
HanXRQChr07g0191651 Helianthus annuus HOM05D003805 ORTHO05D004300 4.0e-14 81.6 107 46.7
Sabra07G0019500 Salix brachista HOM05D003805 ORTHO05D004300 4.0e-14 81.6 108 48.1
COL.COLO4_22043 Corchorus olitorius HOM05D003805 ORTHO05D004300 5.2e-14 81.3 114 44.7
PGSC0003DMG401003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 6.9e-14 80.9 107 48.6
DCAR_016030 Daucus carota HOM05D003805 ORTHO05D004300 9.0e-14 80.5 115 44.3
TWI09G1369 Tripterygium wilfordii HOM05D003805 ORTHO05D004300 1.5e-13 79.7 108 45.4
CSS0002171 Camellia sinensis var. sinensis HOM05D003805 ORTHO05D004300 7.6e-13 77.4 110 48.2
GSVIVG01018926001 Vitis vinifera HOM05D003805 ORTHO05D004300 7.6e-13 77.4 107 45.8
QL06p047086 Quercus lobata HOM05D003805 ORTHO05D004300 9.9e-13 77.0 110 45.5
Gorai.007G201700 Gossypium raimondii HOM05D003805 ORTHO05D004300 1.3e-12 76.6 116 42.2
Haze_15065 Corylus avellana HOM05D000625 ORTHO05D010258 1.7e-12 76.3 105 45.7
Dinv40009 Davidia involucrata HOM05D002962 ORTHO05D004300 2.9e-12 75.5 107 49.5
Sed0017680 Sechium edule HOM05D003805 ORTHO05D004300 2.9e-12 75.5 106 46.2
Lsat_1_v5_gn_2_77300 Lactuca sativa HOM05D003805 ORTHO05D004300 3.8e-12 75.1 110 44.5
Thecc.01G031800 Theobroma cacao HOM05D003805 ORTHO05D004300 4.9e-12 74.7 118 41.5
MELO3C007840.2 Cucumis melo HOM05D003805 ORTHO05D004300 8.4e-12 73.9 106 42.5
CsaV3_6G046430 Cucumis sativus L. HOM05D003805 ORTHO05D004300 8.4e-12 73.9 106 42.5
Sed0008243 Sechium edule HOM05D003805 ORTHO05D004300 1.4e-11 73.2 106 44.3
Gohir.A11G183100 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.9e-11 72.8 112 42.0
Gohir.D11G189500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.9e-11 72.8 114 41.2
PGSC0003DMG402003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 3.2e-11 72.0 100 43.0
Gohir.A12G063700 Gossypium hirsutum HOM05D003805 ORTHO05D004300 5.4e-11 71.2 128 37.5
Lsat_1_v5_gn_2_77360 Lactuca sativa HOM05D003805 ORTHO05D004300 9.3e-11 70.5 106 44.3
ECA238G4264 Erigeron canadensis HOM05D003805 ORTHO05D004300 1.2e-10 70.1 111 36.9
Cpa.g.sc6.148 Carica papaya HOM05D003805 ORTHO05D004300 1.6e-10 69.7 125 41.6
Gohir.D12G063500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.6e-10 69.7 121 38.8
Gorai.008G066800 Gossypium raimondii HOM05D003805 ORTHO05D004300 1.6e-10 69.7 121 38.8
THA.LOC104807465 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 1.6e-10 69.7 110 41.8
HanXRQChr14g0440581 Helianthus annuus HOM05D003805 ORTHO05D004300 2.1e-10 69.3 112 45.5
unitig_0.g473 Utricularia gibba HOM05D003805 ORTHO05D004300 2.1e-10 69.3 110 41.8
ECA238G1778 Erigeron canadensis HOM05D003805 ORTHO05D004300 3.5e-10 68.6 107 42.1
Duzib264G0487 Durio zibethinus HOM05D003805 ORTHO05D004300 4.6e-10 68.2 115 39.1
Lsat_1_v5_gn_2_77320 Lactuca sativa HOM05D003805 ORTHO05D004300 6.0e-10 67.8 113 41.6
Aa31LG6G13290 Aethionema arabicum HOM05D003805 ORTHO05D004300 1.0e-09 67.0 101 45.5
Carub.0007s0382 Capsella rubella HOM05D003805 ORTHO05D004300 1.0e-09 67.0 112 46.4
Ah.03g141100 Amaranthus hybridus HOM05D003805 ORTHO05D004300 1.3e-09 66.6 121 43.0
Lalb_Chr16g0391061 Lupinus albus HOM05D003805 ORTHO05D004300 1.3e-09 66.6 107 43.9
Manes.02G096100 Manihot esculenta HOM05D003805 ORTHO05D004300 1.3e-09 66.6 109 46.8
AT4G36500 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 3.0e-09 65.5 112 45.5
Manes.01G137700 Manihot esculenta HOM05D003805 ORTHO05D004300 3.0e-09 65.5 122 42.6
AL7G14560 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 3.9e-09 65.1 112 45.5
Duzib147G0407 Durio zibethinus HOM05D003805 ORTHO05D004300 3.9e-09 65.1 118 40.7
THA.LOC104819775 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 3.9e-09 65.1 118 42.4
Lj2g0025508 Lotus japonicus HOM05D003805 ORTHO05D004300 5.1e-09 64.7 113 39.8
Sc16g0002610 Simmondsia chinensis HOM05D003805 ORTHO05D004300 5.1e-09 64.7 114 43.0
VMungo1215G0776 Vigna mungo HOM05D003805 ORTHO05D004300 5.1e-09 64.7 109 41.3
Glyma.11G071100 Glycine max HOM05D003805 ORTHO05D004300 8.7e-09 63.9 107 39.3
Nn5g29663 Nelumbo nucifera HOM05D003805 ORTHO05D004300 8.7e-09 63.9 104 39.4
Phvul.002G032400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 8.7e-09 63.9 107 39.3
AT3G50900 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.5e-08 63.2 123 38.2
BcaB01g00567 Brassica carinata HOM05D003805 ORTHO05D004300 3.3e-08 62.0 117 40.2
BcaB03g12394 Brassica carinata HOM05D003805 ORTHO05D004300 4.3e-08 61.6 112 43.8
A03p64280 Brassica napus HOM05D003805 ORTHO05D004300 4.3e-08 61.6 112 43.8
BraA03t15498Z Brassica rapa HOM05D003805 ORTHO05D004300 4.3e-08 61.6 112 43.8
Carub.0003s3236 Capsella rubella HOM05D003805 ORTHO05D004300 4.3e-08 61.6 113 42.5
Thhalv10026576m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 4.3e-08 61.6 112 43.8
Lalb_Chr09g0322201 Lupinus albus HOM05D003805 ORTHO05D004300 4.3e-08 61.6 107 35.5
Phvul.003G255400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 4.3e-08 61.6 108 38.9
BraA08t34177Z Brassica rapa HOM05D003805 ORTHO05D004300 5.6e-08 61.2 112 43.8
A08p22170 Brassica napus HOM05D003805 ORTHO05D004300 7.3e-08 60.8 112 42.9
BcaC01g00464 Brassica carinata HOM05D003805 ORTHO05D004300 9.6e-08 60.5 112 44.6
C03p80150 Brassica napus HOM05D003805 ORTHO05D004300 9.6e-08 60.5 112 44.6
C07p61730 Brassica napus HOM05D003805 ORTHO05D004300 9.6e-08 60.5 112 43.8
BolC3t20271H Brassica oleracea HOM05D003805 ORTHO05D004300 9.6e-08 60.5 112 44.6
BolC7t46598H Brassica oleracea HOM05D003805 ORTHO05D004300 9.6e-08 60.5 112 43.8
Carub.0003s3237 Capsella rubella HOM05D003805 ORTHO05D004300 9.6e-08 60.5 113 42.5
Thhalv10010834m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 9.6e-08 60.5 117 37.6
Sp7g34150 Schrenkiella parvula HOM05D003805 ORTHO05D004300 9.6e-08 60.5 112 42.9
Aa31LG4G19000 Aethionema arabicum HOM05D003805 ORTHO05D004300 1.3e-07 60.1 115 37.4
A01p02360 Brassica napus HOM05D003805 ORTHO05D004300 1.3e-07 60.1 114 46.5
C01p02570 Brassica napus HOM05D003805 ORTHO05D004300 1.3e-07 60.1 114 46.5
AUR62004083 Chenopodium quinoa HOM05D000625 ORTHO05D000467 1.3e-07 60.1 82 47.6
Psat4g094760 Pisum sativum HOM05D003805 ORTHO05D004300 1.3e-07 60.1 110 36.4
Sc03g0003120 Simmondsia chinensis HOM05D003805 ORTHO05D004300 1.3e-07 60.1 124 40.3
BcaNung05311 Brassica carinata HOM05D003805 ORTHO05D004300 2.1e-07 59.3 111 44.1
CARHR244820 Cardamine hirsuta HOM05D003805 ORTHO05D004300 2.1e-07 59.3 112 42.0
PGR119G0937 Punica granatum HOM05D003805 ORTHO05D004300 2.1e-07 59.3 111 39.6
AL5G31260 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 2.8e-07 58.9 117 35.9
BcaC07g39558 Brassica carinata HOM05D003805 ORTHO05D004300 2.8e-07 58.9 118 39.0
A09p44010 Brassica napus HOM05D003805 ORTHO05D004300 2.8e-07 58.9 118 39.0
C08p26110 Brassica napus HOM05D003805 ORTHO05D004300 2.8e-07 58.9 118 39.0
BolC8t50229H Brassica oleracea HOM05D003805 ORTHO05D004300 2.8e-07 58.9 118 39.0
BraA09t39859Z Brassica rapa HOM05D003805 ORTHO05D004300 2.8e-07 58.9 118 39.0
BolC1t00245H Brassica oleracea HOM05D003805 ORTHO05D004300 3.6e-07 58.5 114 45.6
Lj4g0028115 Lotus japonicus HOM05D003805 ORTHO05D004300 3.6e-07 58.5 107 35.5
BcaB05g23252 Brassica carinata HOM05D003805 ORTHO05D004300 4.8e-07 58.2 118 33.1
BcaNung00728 Brassica carinata HOM05D003805 ORTHO05D004300 4.8e-07 58.2 114 45.6
A07p17480 Brassica napus HOM05D000001 ORTHO05D010258 4.8e-07 58.2 121 34.7
Lalb_Chr05g0212681 Lupinus albus HOM05D003805 ORTHO05D004300 6.2e-07 57.8 106 38.7
BcaB02g10024 Brassica carinata HOM05D003805 ORTHO05D004300 8.1e-07 57.4 116 35.3
CARHR160470 Cardamine hirsuta HOM05D003805 ORTHO05D004300 8.1e-07 57.4 117 35.0
Ca_22293_v3 Cicer arietinum L. HOM05D003805 ORTHO05D004300 8.1e-07 57.4 112 37.5
Glyma.01G172100 Glycine max HOM05D003805 ORTHO05D004300 8.1e-07 57.4 107 39.3
Lj4g0007128 Lotus japonicus HOM05D003805 ORTHO05D004300 8.1e-07 57.4 107 34.6
Psat4g094720 Pisum sativum HOM05D003805 ORTHO05D004300 8.1e-07 57.4 110 35.5
Sp7g34160 Schrenkiella parvula HOM05D003805 ORTHO05D004300 8.1e-07 57.4 114 44.7
TAR247G0001 Trochodendron aralioides HOM05D003805 ORTHO05D004300 8.1e-07 57.4 106 35.8
Lj4g0009905 Lotus japonicus HOM05D003805 ORTHO05D004300 1.1e-06 57.0 107 35.5
Psat4g094680 Pisum sativum HOM05D003805 ORTHO05D004300 1.1e-06 57.0 110 34.5
Potri.007G022200 Populus trichocarpa HOM05D003805 ORTHO05D004300 1.1e-06 57.0 109 35.8
BraA01t00224Z Brassica rapa HOM05D003805 ORTHO05D004300 1.4e-06 56.6 114 44.7
Medtr5g020860 Medicago truncatula HOM05D003805 ORTHO05D004300 1.4e-06 56.6 114 32.5
TPR.G2362 Trifolium pratense HOM05D003805 ORTHO05D004300 1.4e-06 56.6 113 31.9
Atru.chr3.624 Acer truncatum HOM05D003805 ORTHO05D004300 1.8e-06 56.2 89 46.1
AT2G18210 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.8e-06 56.2 113 41.6
MBI10_g06731_MAGBIO Magnolia biondii HOM05D003805 ORTHO05D004300 1.8e-06 56.2 113 41.6
Sp2g30240 Schrenkiella parvula HOM05D003805 ORTHO05D004300 1.8e-06 56.2 115 33.0
CARHR281260 Cardamine hirsuta HOM05D003805 ORTHO05D004300 2.4e-06 55.8 113 38.9
BcaNung00729 Brassica carinata HOM05D003805 ORTHO05D004300 3.1e-06 55.5 111 42.3
A01p23830 Brassica napus HOM05D003805 ORTHO05D004300 3.1e-06 55.5 116 33.6
C01p02580 Brassica napus HOM05D003805 ORTHO05D004300 3.1e-06 55.5 111 42.3
BolC1t00246H Brassica oleracea HOM05D003805 ORTHO05D004300 3.1e-06 55.5 111 42.3
BraA01t02291Z Brassica rapa HOM05D003805 ORTHO05D004300 3.1e-06 55.5 116 33.6
Sp1g22390 Schrenkiella parvula HOM05D003805 ORTHO05D004300 3.1e-06 55.5 111 39.6
AT5G66490 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 4.0e-06 55.1 113 37.2
Lsat_1_v5_gn_8_64500 Lactuca sativa HOM05D003805 ORTHO05D004300 4.0e-06 55.1 45 57.8
VMungo0251G1302 Vigna mungo HOM05D003805 ORTHO05D004300 4.0e-06 55.1 108 36.1
A01p02370 Brassica napus HOM05D003805 ORTHO05D004300 5.3e-06 54.7 111 42.3
BraA01t00225Z Brassica rapa HOM05D003805 ORTHO05D004300 5.3e-06 54.7 111 42.3
arahy.Tifrunner.gnm1.ann1.IAMR94 Arachis hypogaea HOM05D003805 ORTHO05D004300 6.9e-06 54.3 115 33.0
BcaNung05312 Brassica carinata HOM05D003805 ORTHO05D004300 9.0e-06 53.9 114 43.0
VMungo0251G0164 Vigna mungo HOM05D003805 ORTHO05D004300 9.0e-06 53.9 108 35.2


User provided reference genes

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