Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold12G06278 Striga asiatica HOM05D004337 ORTHO05D005422 0.0e+00 1215.3 612 100.0
SGA_v2.0_scaffold51G18842 Striga asiatica HOM05D004337 ORTHO05D005422 1.3e-300 1035.8 615 87.3
MSTRG.23236 Avicennia marina HOM05D004337 ORTHO05D005422 5.4e-286 987.3 588 81.6
unitig_736.g22365 Utricularia gibba HOM05D004337 ORTHO05D005422 1.2e-280 969.5 593 80.4
Migut.H02542 Erythranthe guttata HOM05D004337 ORTHO05D005422 3.0e-276 954.9 617 77.5
Peaxi162Scf00353g00735 Petunia axillaris HOM05D004337 ORTHO05D005422 2.8e-274 948.3 593 76.9
TAR376G0777 Trochodendron aralioides HOM05D004337 ORTHO05D005422 3.7e-274 948.0 590 77.5
Oeu054207.1 Olea europaea HOM05D004337 ORTHO05D005422 2.4e-273 945.3 611 76.8
GSVIVG01000243001 Vitis vinifera HOM05D004337 ORTHO05D005422 6.9e-273 943.7 588 77.4
Dinv09624 Davidia involucrata HOM05D004337 ORTHO05D005422 9.0e-273 943.3 589 78.6
Cfa020919 Carpinus fangiana HOM05D004337 ORTHO05D005422 1.2e-272 943.0 589 77.6
Hma1.2p1_0296F.1_g116900 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 1.3e-271 939.5 587 78.9
CAN.G1156.26 Capsicum annuum HOM05D004337 ORTHO05D005422 9.3e-270 933.3 588 77.0
Nitab4.5_0000496g0240 Nicotiana tabacum HOM05D004337 ORTHO05D005422 6.0e-269 930.6 570 78.6
Oeu046358.1 Olea europaea HOM05D004337 ORTHO05D005422 6.0e-269 930.6 589 77.4
CiPaw.15G184900 Carya illinoinensis HOM05D004337 ORTHO05D005422 1.0e-268 929.9 588 76.7
Actinidia36582 Actinidia chinensis HOM05D004337 ORTHO05D005422 1.3e-268 929.5 595 76.8
Potri.004G134500 Populus trichocarpa HOM05D004337 ORTHO05D005422 3.9e-268 927.9 588 76.9
Manes.12G081000 Manihot esculenta HOM05D004337 ORTHO05D005422 6.7e-268 927.2 588 76.9
Potri.T045800 Populus trichocarpa HOM05D004337 ORTHO05D005422 6.7e-268 927.2 588 76.9
Potri.018G137500 Populus trichocarpa HOM05D004337 ORTHO05D005422 1.9e-267 925.6 588 76.7
Gohir.D04G040600 Gossypium hirsutum HOM05D004337 ORTHO05D005422 2.5e-267 925.2 588 76.7
Gorai.012G045800 Gossypium raimondii HOM05D004337 ORTHO05D005422 2.5e-267 925.2 588 76.7
Sabra04G0083600 Salix brachista HOM05D004337 ORTHO05D005422 2.5e-267 925.2 589 76.4
Gohir.A05G375100 Gossypium hirsutum HOM05D004337 ORTHO05D005422 5.7e-267 924.1 588 76.7
Oeu017633.3 Olea europaea HOM05D004337 ORTHO05D005422 7.4e-267 923.7 588 76.9
Gohir.A12G002300 Gossypium hirsutum HOM05D004337 ORTHO05D005422 9.6e-267 923.3 588 76.5
Solyc05g056350.3 Solanum lycopersicum HOM05D004337 ORTHO05D005422 9.6e-267 923.3 592 75.7
Sopen05g034740 Solanum pennellii HOM05D004337 ORTHO05D005422 9.6e-267 923.3 592 75.5
MD15G1140200 Malus domestica HOM05D004337 ORTHO05D005422 1.3e-266 922.9 595 75.6
Thecc.01G146600 Theobroma cacao HOM05D004337 ORTHO05D005422 2.8e-266 921.8 590 76.1
Ciclev10025224m.g Citrus clementina HOM05D004337 ORTHO05D005422 1.4e-265 919.5 590 75.4
MELO3C003282.2 Cucumis melo HOM05D004337 ORTHO05D005422 2.4e-265 918.7 588 76.4
Atru.chr3.1466 Acer truncatum HOM05D004337 ORTHO05D005422 6.9e-265 917.1 593 75.4
Gorai.008G001400 Gossypium raimondii HOM05D004337 ORTHO05D005422 1.2e-264 916.4 595 75.6
Prupe.4G286100 Prunus persica HOM05D004337 ORTHO05D005422 1.2e-264 916.4 591 76.3
CsaV3_4G030000 Cucumis sativus L. HOM05D004337 ORTHO05D005422 1.5e-264 916.0 588 76.0
Nitab4.5_0004764g0030 Nicotiana tabacum HOM05D004337 ORTHO05D005422 2.0e-264 915.6 575 77.9
QL10p037473 Quercus lobata HOM05D004337 ORTHO05D005422 2.0e-264 915.6 587 75.3
Aqoxy5G01850 Aquilegia oxysepala HOM05D004337 ORTHO05D005422 2.6e-264 915.2 591 75.6
Lsat_1_v5_gn_2_40441 Lactuca sativa HOM05D004337 ORTHO05D005422 2.6e-264 915.2 592 75.0
PGSC0003DMG400023451 Solanum tuberosum HOM05D004337 ORTHO05D005422 4.5e-264 914.4 599 74.6
TWI75G1462 Tripterygium wilfordii HOM05D004337 ORTHO05D005422 1.3e-263 912.9 588 75.7
CANSAT54G2432 Cannabis sativa HOM05D004337 ORTHO05D005422 1.7e-263 912.5 597 74.5
MBI06_g32147_MAGBIO Magnolia biondii HOM05D004337 ORTHO05D005422 1.7e-263 912.5 598 74.4
Sed0025757 Sechium edule HOM05D004337 ORTHO05D005422 1.9e-262 909.1 589 76.1
Actinidia19947 Actinidia chinensis HOM05D004337 ORTHO05D005422 3.2e-262 908.3 591 76.3
Thhalv10013045m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 2.7e-261 905.2 593 76.6
FvH4_1g25770 Fragaria vesca HOM05D004337 ORTHO05D005422 6.1e-261 904.0 596 74.2
AL6G19170 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.0e-260 903.3 590 75.9
THA.LOC104818397 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 1.0e-260 903.3 589 75.7
COL.COLO4_33529 Corchorus olitorius HOM05D004337 ORTHO05D005422 3.0e-260 901.7 571 76.5
THA.LOC104819366 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 3.9e-260 901.4 591 75.0
FAN28G1720 Fragaria x ananassa HOM05D004337 ORTHO05D005422 5.1e-260 901.0 615 72.8
FAN23G1824 Fragaria x ananassa HOM05D004337 ORTHO05D005422 1.5e-259 899.4 615 72.7
RcHm_v2.0_Chr3g0484771 Rosa chinensis HOM05D004337 ORTHO05D005422 1.5e-259 899.4 600 74.3
Hund21761 Selenicereus undatus HOM05D004337 ORTHO05D005422 1.5e-259 899.4 590 73.9
CARHR204490 Cardamine hirsuta HOM05D004337 ORTHO05D005422 1.9e-259 899.0 595 75.6
PGR119G0424 Punica granatum HOM05D004337 ORTHO05D005422 4.3e-259 897.9 586 75.4
EL10Ac4g09743 Beta vulgaris HOM05D004337 ORTHO05D005422 2.2e-258 895.6 584 74.3
BcaB08g37252 Brassica carinata HOM05D004337 ORTHO05D005422 2.2e-258 895.6 596 75.2
Lj1g0000957 Lotus japonicus HOM05D004337 ORTHO05D005422 2.2e-258 895.6 583 74.8
ECA238G0122 Erigeron canadensis HOM05D004337 ORTHO05D005422 2.8e-258 895.2 596 73.7
FAN19G0301 Fragaria x ananassa HOM05D004337 ORTHO05D005422 2.8e-258 895.2 613 72.3
VMungo1309G0234 Vigna mungo HOM05D004337 ORTHO05D005422 4.8e-258 894.4 586 75.6
arahy.Tifrunner.gnm1.ann1.X1BSDH Arachis hypogaea HOM05D004337 ORTHO05D005422 8.2e-258 893.6 562 77.0
FAN26G1467 Fragaria x ananassa HOM05D004337 ORTHO05D005422 8.2e-258 893.6 615 72.4
Carub.0006s0742 Capsella rubella HOM05D004337 ORTHO05D005422 1.1e-257 893.3 590 75.1
Aa31LG11G2980 Aethionema arabicum HOM05D004337 ORTHO05D005422 1.8e-257 892.5 588 73.3
Thhalv10003872m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 1.8e-257 892.5 590 73.6
Sc16g0009860 Simmondsia chinensis HOM05D004337 ORTHO05D005422 1.8e-257 892.5 597 72.2
AUR62006971 Chenopodium quinoa HOM05D004337 ORTHO05D005422 4.1e-257 891.3 584 74.3
BolC9t59595H Brassica oleracea HOM05D004337 ORTHO05D005422 5.3e-257 891.0 597 74.7
BcaB04g19858 Brassica carinata HOM05D004337 ORTHO05D005422 9.0e-257 890.2 592 73.6
C09p68510 Brassica napus HOM05D004337 ORTHO05D005422 9.0e-257 890.2 594 74.4
BraA10t44874Z Brassica rapa HOM05D004337 ORTHO05D005422 1.2e-256 889.8 594 74.7
TPR.G7800 Trifolium pratense HOM05D004337 ORTHO05D005422 1.2e-256 889.8 615 71.1
AUR62000615 Chenopodium quinoa HOM05D004337 ORTHO05D005422 2.0e-256 889.0 585 73.5
Sp2g23620 Schrenkiella parvula HOM05D004337 ORTHO05D005422 4.5e-256 887.9 590 73.6
CARHR189960 Cardamine hirsuta HOM05D004337 ORTHO05D005422 5.9e-256 887.5 591 72.8
A06p34530 Brassica napus HOM05D004337 ORTHO05D005422 1.0e-255 886.7 591 73.3
BolC9t53677H Brassica oleracea HOM05D004337 ORTHO05D005422 1.0e-255 886.7 594 73.6
Lalb_Chr07g0183961 Lupinus albus HOM05D004337 ORTHO05D005422 1.0e-255 886.7 592 73.6
BcaC04g23504 Brassica carinata HOM05D004337 ORTHO05D005422 1.3e-255 886.3 594 73.6
C09p07600 Brassica napus HOM05D004337 ORTHO05D005422 1.3e-255 886.3 593 73.4
ATR1089G072 Amborella trichopoda HOM05D004337 ORTHO05D005422 3.8e-255 884.8 594 72.7
A10p28250 Brassica napus HOM05D004337 ORTHO05D005422 3.8e-255 884.8 594 74.4
BraA06t26382Z Brassica rapa HOM05D004337 ORTHO05D005422 3.8e-255 884.8 591 73.1
Zm00001eb082160 Zea mays HOM05D004337 ORTHO05D005422 3.8e-255 884.8 602 72.9
Aa31LG3G18040 Aethionema arabicum HOM05D004337 ORTHO05D005422 6.5e-255 884.0 589 73.7
Psat5g057120 Pisum sativum HOM05D004337 ORTHO05D005422 6.5e-255 884.0 588 72.8
Glyma.04G203800 Glycine max HOM05D004337 ORTHO05D005422 8.5e-255 883.6 584 74.5
C07p43970 Brassica napus HOM05D004337 ORTHO05D005422 1.1e-254 883.2 592 73.3
BraA09t36334Z Brassica rapa HOM05D004337 ORTHO05D005422 1.1e-254 883.2 593 73.2
A09p06870 Brassica napus HOM05D004337 ORTHO05D005422 1.9e-254 882.5 593 73.0
Lj4A821G42 Lonicera japonica HOM05D004337 ORTHO05D005422 1.9e-254 882.5 577 75.6
Medtr3g098210 Medicago truncatula HOM05D004337 ORTHO05D005422 2.5e-254 882.1 592 72.8
Os04g0441900 Oryza sativa ssp. japonica HOM05D004337 ORTHO05D005422 2.5e-254 882.1 605 72.6
HPP92_009218 Vanilla planifolia HOM05D004337 ORTHO05D005422 2.5e-254 882.1 595 73.1
BolC7t44925H Brassica oleracea HOM05D004337 ORTHO05D005422 3.2e-254 881.7 591 73.3
DCAR_009619 Daucus carota HOM05D004337 ORTHO05D005422 1.2e-253 879.8 626 70.9
PSO761G0180 Papaver somniferum HOM05D004337 ORTHO05D005422 1.6e-253 879.4 590 72.4
Carub.0006s2135 Capsella rubella HOM05D004337 ORTHO05D005422 2.7e-253 878.6 591 72.8
Eucgr.I00018 Eucalyptus grandis HOM05D004337 ORTHO05D005422 2.7e-253 878.6 588 73.3
Lalb_Chr12g0202711 Lupinus albus HOM05D004337 ORTHO05D005422 4.6e-253 877.9 592 73.3
AT5G23575 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 6.1e-253 877.5 591 72.8
AL6G34865 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.0e-252 876.7 591 72.9
Rhsim10G0124700 Rhododendron simsii HOM05D004337 ORTHO05D005422 3.9e-252 874.8 719 63.3
Glyma.06G161400 Glycine max HOM05D004337 ORTHO05D005422 2.0e-251 872.5 579 73.9
HanXRQChr10g0285831 Helianthus annuus HOM05D004337 ORTHO05D005422 2.0e-251 872.5 555 76.8
Zm00001eb422980 Zea mays HOM05D004337 ORTHO05D005422 2.0e-251 872.5 598 72.4
PSO210G2848 Papaver somniferum HOM05D004337 ORTHO05D005422 2.5e-251 872.1 596 71.0
Phvul.009G159800 Phaseolus vulgaris HOM05D004337 ORTHO05D005422 5.7e-251 870.9 591 73.1
Ca_17042_v3 Cicer arietinum L. HOM05D004337 ORTHO05D005422 5.3e-249 864.4 588 72.8
Nn5g27210 Nelumbo nucifera HOM05D004337 ORTHO05D005422 3.8e-247 858.2 565 74.9
Dinv10851 Davidia involucrata HOM05D004337 ORTHO05D005422 4.7e-245 851.3 551 76.0
arahy.Tifrunner.gnm1.ann1.397MFZ Arachis hypogaea HOM05D004337 ORTHO05D005422 6.1e-245 850.9 603 71.0
AT5G08500 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 3.7e-242 841.6 540 77.4
Peaxi162Scf00651g00114 Petunia axillaris HOM05D004337 ORTHO05D005422 2.4e-241 839.0 595 70.8
Sp6g34400 Schrenkiella parvula HOM05D004337 ORTHO05D005422 1.6e-237 826.2 596 70.6
vmacro12739 Vaccinium macrocarpon HOM05D004337 ORTHO05D005422 2.2e-231 805.8 916 49.8
CSS0021638 Camellia sinensis var. sinensis HOM05D004337 ORTHO05D005422 3.8e-231 805.1 517 77.0
SMO116G0204 Selaginella moellendorffii HOM05D004337 ORTHO05D005422 7.2e-230 800.8 571 68.7
Mapoly0020s0073 Marchantia polymorpha HOM05D004337 ORTHO05D005422 8.0e-229 797.3 587 67.0
AL6G18970 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.4e-225 786.6 884 50.8
Pp3c5_10010 Physcomitrium patens HOM05D004337 ORTHO05D005422 1.0e-207 727.2 578 62.5
Duzib264G1201 Durio zibethinus HOM05D004337 ORTHO05D005422 7.3e-206 721.1 588 62.9
Gohir.D12G002000 Gossypium hirsutum HOM05D004337 ORTHO05D005422 2.9e-202 709.1 588 61.9
Ah.06g188230 Amaranthus hybridus HOM05D004337 ORTHO05D005422 8.6e-199 697.6 535 66.7
Cc00_g00820 Coffea canephora HOM05D004337 ORTHO05D005422 3.1e-196 689.1 422 79.9
CBR_g44530 Chara braunii HOM05D004337 ORTHO05D005422 4.0e-188 662.1 584 56.8
CDE05G2996 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 3.1e-180 636.0 447 68.7
Haze_19353 Corylus avellana HOM05D004337 ORTHO05D005422 3.6e-173 612.5 340 87.4
AL6G18990 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 5.3e-164 582.0 475 66.5
SHI38349 Sapria himalayana HOM05D004337 ORTHO05D005422 7.4e-158 561.6 420 69.5
Cre09.g397900 Chlamydomonas reinhardtii HOM05D004337 ORTHO05D005422 2.4e-148 530.0 601 47.6
ClCG04G002690 Citrullus lanatus HOM05D004337 ORTHO05D005422 1.1e-142 511.1 307 81.1
AL6G19200 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 9.7e-134 481.5 464 59.7
MCO10G243 Micromonas commoda HOM05D004337 ORTHO05D005422 4.2e-113 412.9 344 57.6
Haze_27034 Corylus avellana HOM05D004337 ORTHO05D005422 5.9e-99 365.9 461 42.7
Cfa024513 Carpinus fangiana HOM05D004337 ORTHO05D005422 8.0e-96 355.5 527 37.8
PRCOL_00006172 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 5.8e-94 349.4 505 40.0
Cpa.g.sc138.38 Carica papaya HOM05D004337 ORTHO05D005422 1.4e-87 328.2 216 70.8
SalBow8G1257 Salvia bowleyana HOM05D004337 ORTHO05D005422 2.6e-86 323.9 218 72.5
SalBow8G3722 Salvia bowleyana HOM05D004337 ORTHO05D005422 2.6e-86 323.9 218 72.5
Cpa.g.sc3593.1 Carica papaya HOM05D004337 ORTHO05D005422 7.5e-86 322.4 188 83.5
Haze_19352 Corylus avellana HOM05D004337 ORTHO05D005422 3.3e-81 307.0 226 65.5
MCO07G426 Micromonas commoda HOM05D004337 ORTHO05D005422 1.1e-73 282.0 609 32.3
AL6G19020 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.8e-71 274.6 239 62.3
Cc00_g00810 Coffea canephora HOM05D004337 ORTHO05D005422 4.1e-68 263.5 164 77.4
PRCOL_00005640 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 2.1e-64 251.1 388 35.6
ClCG04G002680 Citrullus lanatus HOM05D004337 ORTHO05D005422 4.9e-61 240.0 174 66.7
HPP92_009290 Vanilla planifolia HOM05D004337 ORTHO05D005422 3.0e-50 204.1 245 50.6
CDE05G3583 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 4.5e-46 190.3 109 86.2
Hma1.2p1_0641F.1_g194250 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 6.9e-31 139.8 72 91.7
Psat3g077400 Pisum sativum HOM05D004337 ORTHO05D005422 1.3e-29 135.6 110 60.0
BcaC04g21668 Brassica carinata HOM05D004337 ORTHO05D021976 2.5e-25 121.3 73 74.0
C09p29160 Brassica napus HOM05D004337 ORTHO05D021976 3.3e-25 120.9 69 76.8
Hma1.2p1_0641F.1_g194230 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 1.4e-18 99.0 105 54.3
SEGI_12766 Sequoiadendron giganteum HOM05D004337 ORTHO05D005422 8.2e-16 89.7 44 86.4
AUR62044487 Chenopodium quinoa HOM05D004337 ORTHO05D021976 3.6e-11 74.3 49 61.2
AUR62044516 Chenopodium quinoa HOM05D004337 ORTHO05D021976 3.6e-11 74.3 49 61.2
AUR62038356 Chenopodium quinoa HOM05D001477 ORTHO05D021976 2.6e-09 68.2 43 65.1
SHI11402 Sapria himalayana HOM05D000039 ORTHO05D006865 7.4e-09 66.6 48 56.2


User provided reference genes

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