Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold12G06257 Striga asiatica HOM05D005905 ORTHO05D005996 1.8e-235 818.9 434 100.0
MSTRG.23227 Avicennia marina HOM05D005905 ORTHO05D005996 5.7e-120 435.3 434 55.1
Migut.H02558 Erythranthe guttata HOM05D005905 ORTHO05D005996 7.4e-112 408.3 438 57.3
SalBow8G4641 Salvia bowleyana HOM05D005905 ORTHO05D005996 2.9e-108 396.4 421 56.3
Lj4A826T50 Lonicera japonica HOM05D005905 ORTHO05D005996 1.4e-86 324.3 432 45.1
Nitab4.5_0010070g0020 Nicotiana tabacum HOM05D005905 ORTHO05D005996 9.1e-86 321.6 483 41.4
Peaxi162Scf00353g00730 Petunia axillaris HOM05D005905 ORTHO05D005996 2.9e-84 316.6 477 41.1
CAN.G1921.10 Capsicum annuum HOM05D005905 ORTHO05D005996 1.8e-81 307.4 481 41.0
Nitab4.5_0000496g0260 Nicotiana tabacum HOM05D005905 ORTHO05D005996 4.0e-81 306.2 484 39.7
Hma1.2p1_0213F.1_g090480 Hydrangea macrophylla HOM05D005905 ORTHO05D005996 1.7e-79 300.8 446 44.2
QL10p035062 Quercus lobata HOM05D005905 ORTHO05D005996 2.2e-79 300.4 436 42.0
PGSC0003DMG400023332 Solanum tuberosum HOM05D005905 ORTHO05D005996 2.8e-79 300.1 473 41.0
unitig_899.g14973 Utricularia gibba HOM05D005905 ORTHO05D005996 8.3e-79 298.5 422 45.0
Sopen05g034710 Solanum pennellii HOM05D005905 ORTHO05D005996 2.0e-77 293.9 470 42.1
Solyc05g056320.3 Solanum lycopersicum HOM05D005905 ORTHO05D005996 5.9e-77 292.4 469 42.0
DCAR_019943 Daucus carota HOM05D005905 ORTHO05D005996 1.0e-76 291.6 447 42.5
Haze_19376 Corylus avellana HOM05D005905 ORTHO05D005996 1.0e-73 281.6 440 41.6
Cpa.g.sc127.35 Carica papaya HOM05D005905 ORTHO05D005996 1.8e-73 280.8 447 39.4
Cc07_g19890 Coffea canephora HOM05D005905 ORTHO05D005996 1.8e-73 280.8 466 40.3
Gorai.012G048200 Gossypium raimondii HOM05D005905 ORTHO05D005996 3.0e-73 280.0 428 41.1
Gohir.D04G042700 Gossypium hirsutum HOM05D005905 ORTHO05D005996 6.8e-73 278.9 428 40.9
Cfa020942 Carpinus fangiana HOM05D005905 ORTHO05D005996 1.2e-72 278.1 434 41.0
RcHm_v2.0_Chr2g0116171 Rosa chinensis HOM05D005905 ORTHO05D005996 1.2e-72 278.1 440 41.6
Nn5g27344 Nelumbo nucifera HOM05D005905 ORTHO05D005996 7.5e-72 275.4 461 41.2
Gohir.A05G372800 Gossypium hirsutum HOM05D005905 ORTHO05D005996 9.8e-72 275.0 445 40.4
Prupe.6G175200 Prunus persica HOM05D005905 ORTHO05D005996 6.3e-71 272.3 453 39.7
CiPaw.15G186200 Carya illinoinensis HOM05D005905 ORTHO05D005996 8.3e-71 271.9 435 40.5
THA.LOC104800580 Tarenaya hassleriana HOM05D005905 ORTHO05D005996 1.4e-70 271.2 420 39.0
Thecc.01G145000 Theobroma cacao HOM05D005905 ORTHO05D005996 2.4e-70 270.4 442 42.1
vmacro12853 Vaccinium macrocarpon HOM05D005905 ORTHO05D005996 7.0e-70 268.9 440 40.5
Atru.chr3.1412 Acer truncatum HOM05D005905 ORTHO05D005996 1.6e-69 267.7 449 38.8
Lj1g0015901 Lotus japonicus HOM05D005905 ORTHO05D005996 1.6e-69 267.7 445 39.8
COL.COLO4_12147 Corchorus olitorius HOM05D005905 ORTHO05D005996 2.0e-69 267.3 441 42.0
MBI03_g20878_MAGBIO Magnolia biondii HOM05D005905 ORTHO05D005996 4.5e-69 266.2 420 41.2
AT5G23520 Arabidopsis thaliana HOM05D005905 ORTHO05D005996 1.3e-68 264.6 444 39.4
Hund21772 Selenicereus undatus HOM05D005905 ORTHO05D005996 1.3e-68 264.6 432 41.2
CARHR190020 Cardamine hirsuta HOM05D005905 ORTHO05D005996 5.0e-68 262.7 421 37.8
Psat3g100200 Pisum sativum HOM05D005905 ORTHO05D005996 5.0e-68 262.7 458 38.9
Manes.13G155500 Manihot esculenta HOM05D005905 ORTHO05D005996 6.6e-68 262.3 460 38.9
BraA06t26376Z Brassica rapa HOM05D005905 ORTHO05D005996 1.1e-67 261.5 443 38.6
Medtr7g081260 Medicago truncatula HOM05D005905 ORTHO05D005996 1.5e-67 261.2 437 41.2
A06p34480 Brassica napus HOM05D005905 ORTHO05D005996 2.5e-67 260.4 443 38.4
FvH4_1g22090 Fragaria vesca HOM05D005905 ORTHO05D005996 2.5e-67 260.4 435 40.5
TWI75G0068 Tripterygium wilfordii HOM05D005905 ORTHO05D005996 3.3e-67 260.0 416 40.6
AL6G34790 Arabidopsis lyrata HOM05D005905 ORTHO05D005996 4.2e-67 259.6 450 39.1
arahy.Tifrunner.gnm1.ann1.TUTH4E Arachis hypogaea HOM05D005905 ORTHO05D005996 5.5e-67 259.2 450 41.3
TAR628G0724 Trochodendron aralioides HOM05D005905 ORTHO05D005996 5.5e-67 259.2 438 42.7
Aa31LG11G2910 Aethionema arabicum HOM05D005905 ORTHO05D005996 9.5e-67 258.5 442 36.7
Sabra19G0011400 Salix brachista HOM05D005905 ORTHO05D005996 9.5e-67 258.5 427 39.6
MD15G1334300 Malus domestica HOM05D005905 ORTHO05D005996 1.6e-66 257.7 442 38.9
arahy.Tifrunner.gnm1.ann1.N289YY Arachis hypogaea HOM05D005905 ORTHO05D005996 3.6e-66 256.5 450 41.1
TPR.G29110 Trifolium pratense HOM05D005905 ORTHO05D005996 4.7e-66 256.1 433 39.0
Glyma.18G248600 Glycine max HOM05D005905 ORTHO05D005996 6.1e-66 255.8 428 40.9
Sabra19G0001400 Salix brachista HOM05D005905 ORTHO05D005996 1.0e-65 255.0 424 39.2
Sp2g23680 Schrenkiella parvula HOM05D005905 ORTHO05D005996 1.0e-65 255.0 443 37.5
Carub.0006s2129 Capsella rubella HOM05D005905 ORTHO05D005996 2.3e-65 253.8 443 38.4
HanXRQChr04g0110551 Helianthus annuus HOM05D005905 ORTHO05D005996 2.3e-65 253.8 414 41.1
EL10Ac4g09704 Beta vulgaris HOM05D005905 ORTHO05D005996 5.2e-65 252.7 451 38.1
C07p44070 Brassica napus HOM05D005905 ORTHO05D005996 8.9e-65 251.9 435 37.2
Lalb_Chr19g0126361 Lupinus albus HOM05D005905 ORTHO05D005996 8.9e-65 251.9 437 39.4
EL10Ac8g19310 Beta vulgaris HOM05D005905 ORTHO05D005996 1.2e-64 251.5 457 37.9
BcaNung03737 Brassica carinata HOM05D005905 ORTHO05D005996 1.2e-64 251.5 436 36.9
BcaNung03738 Brassica carinata HOM05D005905 ORTHO05D005996 1.2e-64 251.5 444 37.2
BcaNung03739 Brassica carinata HOM05D005905 ORTHO05D005996 1.2e-64 251.5 444 37.2
BolC7t44931H Brassica oleracea HOM05D005905 ORTHO05D005996 1.2e-64 251.5 436 36.9
AUR62006929 Chenopodium quinoa HOM05D005905 ORTHO05D005996 3.4e-64 250.0 456 39.0
Ca_08055_v3 Cicer arietinum L. HOM05D005905 ORTHO05D005996 4.4e-64 249.6 431 38.5
Potri.T013000 Populus trichocarpa HOM05D005905 ORTHO05D005996 7.5e-64 248.8 426 38.3
Ca_08049_v3 Cicer arietinum L. HOM05D005905 ORTHO05D005996 9.8e-64 248.4 451 37.9
Ciclev10025459m.g Citrus clementina HOM05D005905 ORTHO05D005996 9.8e-64 248.4 387 41.3
Rhsim10G0138000 Rhododendron simsii HOM05D006573 ORTHO05D008073 9.8e-64 248.4 430 39.1
PGR102G2263 Punica granatum HOM05D005905 ORTHO05D005996 3.7e-63 246.5 422 39.6
Eucgr.H05059 Eucalyptus grandis HOM05D005905 ORTHO05D005996 8.3e-63 245.4 457 37.9
Manes.17G045200 Manihot esculenta HOM05D005905 ORTHO05D005996 1.8e-62 244.2 441 38.3
AUR62000575 Chenopodium quinoa HOM05D005905 ORTHO05D005996 3.5e-61 240.0 470 37.0
PSO170G3497 Papaver somniferum HOM05D005905 ORTHO05D005996 3.9e-60 236.5 450 36.9
PSO017G4395 Papaver somniferum HOM05D005905 ORTHO05D005996 8.6e-60 235.3 440 37.7
Phvul.008G048800 Phaseolus vulgaris HOM05D005905 ORTHO05D005996 8.6e-60 235.3 439 37.4
Aqoxy6G00049 Aquilegia oxysepala HOM05D005905 ORTHO05D005996 5.6e-59 232.6 443 37.9
VMungo1383G1950 Vigna mungo HOM05D005905 ORTHO05D005996 2.1e-58 230.7 420 36.7
Thhalv10004341m.g Eutrema salsugineum HOM05D005905 ORTHO05D005996 8.0e-58 228.8 416 37.5
GSVIVG01000261001 Vitis vinifera HOM05D005905 ORTHO05D005996 1.8e-57 227.6 211 56.4
Lsat_1_v5_gn_2_40320 Lactuca sativa HOM05D005905 ORTHO05D005996 8.9e-57 225.3 407 37.8
FAN19G0082 Fragaria x ananassa HOM05D005905 ORTHO05D005996 3.4e-56 223.4 417 37.9
Cc07_g19900 Coffea canephora HOM05D005905 ORTHO05D005996 4.4e-56 223.0 461 37.1
MELO3C015720.2 Cucumis melo HOM05D005905 ORTHO05D005996 4.4e-56 223.0 448 35.7
Duzib187G1788 Durio zibethinus HOM05D005905 ORTHO05D005996 4.4e-56 223.0 409 39.4
Sc09g0001990 Simmondsia chinensis HOM05D005905 ORTHO05D005996 5.8e-56 222.6 428 37.9
CsaV3_7G027220 Cucumis sativus L. HOM05D005905 ORTHO05D005996 7.5e-56 222.2 441 35.8
Os04g0442100 Oryza sativa ssp. japonica HOM05D005905 ORTHO05D005996 3.7e-55 219.9 429 37.5
Sed0023505 Sechium edule HOM05D005905 ORTHO05D005996 8.3e-55 218.8 393 37.7
CDE02G2172 Ceratophyllum demersum HOM05D005905 ORTHO05D005996 1.1e-54 218.4 432 35.9
Glyma.09G244700 Glycine max HOM05D005905 ORTHO05D005996 5.4e-54 216.1 408 38.7
ClCG09G007860 Citrullus lanatus HOM05D005905 ORTHO05D005996 3.0e-52 210.3 370 36.8
HPP92_011435 Vanilla planifolia HOM05D005905 ORTHO05D005996 1.2e-50 204.9 416 36.3
FAN28G0415 Fragaria x ananassa HOM05D000290 ORTHO05D002418 2.1e-50 204.1 413 35.6
SEGI_40650 Sequoiadendron giganteum HOM05D005905 ORTHO05D005996 2.8e-50 203.8 441 34.9
Dinv17124 Davidia involucrata HOM05D010983 ORTHO05D005996 2.0e-48 197.6 177 57.6
CANSAT54G0939 Cannabis sativa HOM05D005905 ORTHO05D005996 1.1e-43 181.8 319 37.9
FAN23G0918 Fragaria x ananassa HOM05D000290 ORTHO05D002418 8.1e-42 175.6 413 33.9
FAN26G1302 Fragaria x ananassa HOM05D000290 ORTHO05D002418 8.1e-42 175.6 413 34.1
BcaNung03858 Brassica carinata HOM05D005905 ORTHO05D005996 4.4e-40 169.9 184 46.7
Atru.chr3.1426 Acer truncatum HOM05D005905 ORTHO05D005996 5.4e-38 162.9 165 55.2
ATR1089G162 Amborella trichopoda HOM05D005905 ORTHO05D005996 8.6e-36 155.6 181 49.7
SHI08855 Sapria himalayana HOM05D005905 ORTHO05D005996 1.1e-35 155.2 243 39.9
Dinv17121 Davidia involucrata HOM05D005905 ORTHO05D005996 2.0e-32 144.4 256 36.7
QL05p019434 Quercus lobata HOM05D005905 ORTHO05D005996 3.4e-32 143.7 198 43.9
Pp3c18_21070 Physcomitrium patens HOM05D005905 ORTHO05D005996 1.3e-31 141.7 344 32.0
QL09p047332 Quercus lobata HOM05D005905 ORTHO05D005996 8.4e-31 139.0 201 42.3
Mapoly0015s0082 Marchantia polymorpha HOM05D005905 ORTHO05D005996 1.6e-29 134.8 211 38.9
Ah.06g188350 Amaranthus hybridus HOM05D005905 ORTHO05D005996 4.3e-27 126.7 314 31.5
QL09p028391 Quercus lobata HOM05D005905 ORTHO05D005996 7.3e-27 125.9 194 40.7
Lalb_Chr20g0117801 Lupinus albus HOM05D005905 ORTHO05D005996 1.1e-25 122.1 191 39.8
Lalb_Chr20g0117861 Lupinus albus HOM05D005905 ORTHO05D005996 1.1e-25 122.1 191 39.8
Pp3c21_2450 Physcomitrium patens HOM05D005905 ORTHO05D005996 1.8e-25 121.3 228 35.5
AagrBONN_evm.TU.Sc2ySwM_368.3232 Anthoceros agrestis HOM05D005905 ORTHO05D005996 4.4e-24 116.7 204 35.3
Hma1.2p1_0213F.1_g090490 Hydrangea macrophylla HOM05D005905 ORTHO05D005996 1.3e-20 105.1 265 35.1
SMO239G0053 Selaginella moellendorffii HOM05D005905 ORTHO05D005996 1.7e-20 104.8 179 38.5
Medtr6g034130 Medicago truncatula HOM05D005905 ORTHO05D005996 1.1e-19 102.1 178 33.1
Lj3g0014044 Lotus japonicus HOM05D005905 ORTHO05D005996 1.5e-19 101.7 136 41.9
HPP92_011427 Vanilla planifolia HOM05D005905 ORTHO05D005996 5.6e-19 99.8 137 42.3
Medtr6g034165 Medicago truncatula HOM05D005905 ORTHO05D005996 3.6e-18 97.1 195 28.7
Ah.06g188320 Amaranthus hybridus HOM05D005905 ORTHO05D005996 2.4e-17 94.4 441 26.5
Ah.06g188340 Amaranthus hybridus HOM05D005905 ORTHO05D005996 3.1e-17 94.0 170 36.5
Ah.14g088890 Amaranthus hybridus HOM05D005905 ORTHO05D005996 4.5e-16 90.1 200 30.0
TPR.G33754 Trifolium pratense HOM05D005905 ORTHO05D005996 4.6e-13 80.1 81 50.6
Ah.06g188380 Amaranthus hybridus HOM05D005905 ORTHO05D005996 6.0e-13 79.7 181 29.3
arahy.Tifrunner.gnm1.ann1.F86J4F Arachis hypogaea HOM05D005905 ORTHO05D005996 6.2e-10 69.7 133 42.1
Atru.chr3.1427 Acer truncatum HOM05D005905 ORTHO05D005996 2.4e-09 67.8 161 31.1
Psat3g183880 Pisum sativum HOM05D000564 ORTHO05D005996 6.9e-09 66.2 138 37.0
Potri.018G145524 Populus trichocarpa HOM05D005905 ORTHO05D005996 1.1e-06 58.9 39 69.2


User provided reference genes

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