Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold12G06219 Striga asiatica HOM05D004821 ORTHO05D005711 9.3e-184 646.7 327 100.0
Oeu033086.1 Olea europaea HOM05D004821 ORTHO05D005711 2.2e-137 492.7 331 74.3
MSTRG.4551 Avicennia marina HOM05D004821 ORTHO05D005711 2.7e-135 485.7 328 74.1
Migut.G00920 Erythranthe guttata HOM05D004821 ORTHO05D005711 9.8e-133 477.2 327 74.0
SalBow3G1744 Salvia bowleyana HOM05D004821 ORTHO05D005711 2.5e-128 462.6 366 66.7
Peaxi162Scf00329g00933 Petunia axillaris HOM05D004821 ORTHO05D005711 1.7e-124 449.9 299 72.6
Actinidia18397 Actinidia chinensis HOM05D004821 ORTHO05D005711 2.2e-124 449.5 293 73.4
Solyc04g008520.3 Solanum lycopersicum HOM05D004821 ORTHO05D005711 2.7e-122 442.6 314 69.4
Cc03_g15980 Coffea canephora HOM05D004821 ORTHO05D005711 7.8e-122 441.0 294 73.1
Sopen04g003670 Solanum pennellii HOM05D004821 ORTHO05D005711 7.8e-122 441.0 315 69.2
Nn1g09422 Nelumbo nucifera HOM05D004821 ORTHO05D005711 1.9e-120 436.4 326 65.6
Nitab4.5_0006607g0020 Nicotiana tabacum HOM05D004821 ORTHO05D005711 5.6e-120 434.9 316 67.4
Manes.01G010100 Manihot esculenta HOM05D004821 ORTHO05D005711 1.2e-119 433.7 294 70.4
PGR042G3220 Punica granatum HOM05D004821 ORTHO05D005711 1.2e-119 433.7 313 67.7
Potri.007G144900 Populus trichocarpa HOM05D004821 ORTHO05D005711 2.1e-119 433.0 293 71.0
Actinidia11430 Actinidia chinensis HOM05D004821 ORTHO05D005711 2.8e-119 432.6 316 67.7
PGSC0003DMG400029438 Solanum tuberosum HOM05D004821 ORTHO05D005711 4.7e-119 431.8 295 70.2
Lj6A619G67 Lonicera japonica HOM05D004821 ORTHO05D005711 1.8e-118 429.9 294 71.1
Cpa.g.sc151.7 Carica papaya HOM05D004821 ORTHO05D005711 2.3e-118 429.5 298 70.5
Nitab4.5_0000129g0470 Nicotiana tabacum HOM05D004821 ORTHO05D005711 3.1e-118 429.1 320 66.6
Sabra07G0115900 Salix brachista HOM05D004821 ORTHO05D005711 4.0e-118 428.7 293 69.6
Aa31LG1G25650 Aethionema arabicum HOM05D004821 ORTHO05D005711 6.8e-118 427.9 296 70.6
Hma1.2p1_0872F.1_g231140 Hydrangea macrophylla HOM05D004821 ORTHO05D005711 8.9e-118 427.6 296 69.9
Hund22594 Selenicereus undatus HOM05D004821 ORTHO05D005711 8.9e-118 427.6 300 69.3
C03p29340 Brassica napus HOM05D004821 ORTHO05D005711 2.0e-117 426.4 295 70.8
Ciclev10021021m.g Citrus clementina HOM05D004821 ORTHO05D005711 2.6e-117 426.0 294 70.1
Thhalv10001539m.g Eutrema salsugineum HOM05D004821 ORTHO05D005711 2.6e-117 426.0 332 65.7
Carub.0004s2652 Capsella rubella HOM05D004821 ORTHO05D005711 4.4e-117 425.2 341 64.5
BcaB01g03351 Brassica carinata HOM05D004821 ORTHO05D005711 5.8e-117 424.9 295 70.8
A03p24610 Brassica napus HOM05D004821 ORTHO05D005711 9.8e-117 424.1 295 70.5
BraA03t11666Z Brassica rapa HOM05D004821 ORTHO05D005711 9.8e-117 424.1 295 70.5
CANSAT56G1350 Cannabis sativa HOM05D004821 ORTHO05D005711 9.8e-117 424.1 295 68.5
CSS0009446 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 1.3e-116 423.7 293 69.6
CSS0027099 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 1.3e-116 423.7 293 69.6
Rhsim09G0003600 Rhododendron simsii HOM05D004821 ORTHO05D005711 1.7e-116 423.3 302 68.9
Aqoxy5G00034 Aquilegia oxysepala HOM05D004821 ORTHO05D005711 2.2e-116 422.9 293 67.9
Cfa008514 Carpinus fangiana HOM05D004821 ORTHO05D005711 2.2e-116 422.9 293 70.0
Haze_11130 Corylus avellana HOM05D004821 ORTHO05D005711 2.2e-116 422.9 293 70.0
Potri.017G007300 Populus trichocarpa HOM05D004821 ORTHO05D005711 6.4e-116 421.4 311 67.2
Migut.N03030 Erythranthe guttata HOM05D004821 ORTHO05D005711 8.3e-116 421.0 300 68.3
CARHR139130 Cardamine hirsuta HOM05D004821 ORTHO05D005711 1.9e-115 419.9 295 70.2
Atru.chr3.1996 Acer truncatum HOM05D004821 ORTHO05D005711 2.4e-115 419.5 294 69.7
TPR.G5989 Trifolium pratense HOM05D004821 ORTHO05D005711 3.2e-115 419.1 295 68.1
AL4G42830 Arabidopsis lyrata HOM05D004821 ORTHO05D005711 5.4e-115 418.3 322 66.5
AT2G43950 Arabidopsis thaliana HOM05D004821 ORTHO05D005711 5.4e-115 418.3 322 66.5
PSO675G6376 Papaver somniferum HOM05D004821 ORTHO05D005711 9.2e-115 417.5 295 68.1
RcHm_v2.0_Chr2g0084461 Rosa chinensis HOM05D004821 ORTHO05D005711 1.6e-114 416.8 296 68.6
BolC3t15281H Brassica oleracea HOM05D004821 ORTHO05D005711 2.7e-114 416.0 341 63.0
Lj4g0002865 Lotus japonicus HOM05D004821 ORTHO05D005711 2.7e-114 416.0 329 64.7
Sabra17G0008100 Salix brachista HOM05D004821 ORTHO05D005711 2.7e-114 416.0 293 69.3
Sp4g26050 Schrenkiella parvula HOM05D004821 ORTHO05D005711 2.7e-114 416.0 327 64.5
CiPaw.01G201700 Carya illinoinensis HOM05D004821 ORTHO05D005711 3.5e-114 415.6 293 68.9
Eucgr.A00428 Eucalyptus grandis HOM05D004821 ORTHO05D005711 4.6e-114 415.2 293 70.6
Thecc.03G204200 Theobroma cacao HOM05D004821 ORTHO05D005711 6.0e-114 414.8 292 68.5
Eucgr.A00426 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.7e-113 413.3 298 70.5
CiPaw.02G124700 Carya illinoinensis HOM05D004821 ORTHO05D005711 5.0e-113 411.8 312 67.0
BcaB06g29351 Brassica carinata HOM05D004821 ORTHO05D005711 8.6e-113 411.0 296 68.9
PSO732G0644 Papaver somniferum HOM05D004821 ORTHO05D005711 8.6e-113 411.0 287 69.0
arahy.Tifrunner.gnm1.ann1.PJYW2S Arachis hypogaea HOM05D004821 ORTHO05D005711 1.1e-112 410.6 320 64.1
arahy.Tifrunner.gnm1.ann1.TNA3AF Arachis hypogaea HOM05D004821 ORTHO05D005711 1.1e-112 410.6 320 64.1
Lsat_1_v5_gn_7_44620 Lactuca sativa HOM05D004821 ORTHO05D005711 1.9e-112 409.8 307 65.5
FvH4_1g00191 Fragaria vesca HOM05D004821 ORTHO05D005711 7.3e-112 407.9 296 66.6
C04p70840 Brassica napus HOM05D004821 ORTHO05D005711 1.6e-111 406.8 298 67.4
Psat4g001240 Pisum sativum HOM05D004821 ORTHO05D005711 2.8e-111 406.0 295 64.4
BraA04t18773Z Brassica rapa HOM05D004821 ORTHO05D005711 4.7e-111 405.2 297 67.3
MBI10_g16333_MAGBIO Magnolia biondii HOM05D004821 ORTHO05D005711 4.7e-111 405.2 292 67.5
A04p33140 Brassica napus HOM05D004821 ORTHO05D005711 6.2e-111 404.8 297 67.3
Ca_13543_v3 Cicer arietinum L. HOM05D004821 ORTHO05D005711 6.2e-111 404.8 333 60.7
Prupe.7G269800 Prunus persica HOM05D004821 ORTHO05D005711 8.0e-111 404.4 308 64.3
QL10p064358 Quercus lobata HOM05D004821 ORTHO05D005711 8.0e-111 404.4 297 66.7
THA.LOC104802343 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 8.0e-111 404.4 311 64.0
THA.LOC104804303 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 1.1e-110 404.1 296 66.9
COL.COLO4_16819 Corchorus olitorius HOM05D004821 ORTHO05D005711 1.4e-110 403.7 292 67.5
Ah.13g073170 Amaranthus hybridus HOM05D004821 ORTHO05D005711 3.1e-110 402.5 314 62.4
DCAR_029913 Daucus carota HOM05D004821 ORTHO05D005711 3.1e-110 402.5 293 65.9
MD15G1143200 Malus domestica HOM05D004821 ORTHO05D005711 3.1e-110 402.5 293 66.9
ClCG09G014480 Citrullus lanatus HOM05D004821 ORTHO05D005711 4.0e-110 402.1 299 63.9
CsaV3_6G037260 Cucumis sativus L. HOM05D004821 ORTHO05D005711 4.0e-110 402.1 323 60.4
unitig_37.g12004 Utricularia gibba HOM05D004821 ORTHO05D005711 4.0e-110 402.1 309 65.0
VMungo1215G0856 Vigna mungo HOM05D004821 ORTHO05D005711 1.2e-109 400.6 312 61.9
EL10Ac3g06166 Beta vulgaris HOM05D004821 ORTHO05D005711 2.0e-109 399.8 316 63.0
Sed0001216 Sechium edule HOM05D004821 ORTHO05D005711 2.0e-109 399.8 293 64.5
Duzib205G0343 Durio zibethinus HOM05D004821 ORTHO05D005711 3.4e-109 399.1 314 63.7
Medtr4g134950 Medicago truncatula HOM05D004821 ORTHO05D005711 4.4e-109 398.7 320 60.6
FAN26G2560 Fragaria x ananassa HOM05D004821 ORTHO05D005711 5.8e-109 398.3 296 64.9
FAN26G2598 Fragaria x ananassa HOM05D004821 ORTHO05D005711 5.8e-109 398.3 296 64.9
MD00G1087400 Malus domestica HOM05D004821 ORTHO05D005711 5.8e-109 398.3 293 65.5
Gohir.A11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 7.5e-109 397.9 293 66.2
Phvul.003G074500 Phaseolus vulgaris HOM05D004821 ORTHO05D005711 9.8e-109 397.5 293 65.5
Glyma.17G000700 Glycine max HOM05D004821 ORTHO05D005711 1.7e-108 396.7 294 63.9
Gorai.007G016400 Gossypium raimondii HOM05D004821 ORTHO05D005711 2.2e-108 396.4 293 66.2
CAN.G458.7 Capsicum annuum HOM05D004821 ORTHO05D005711 4.9e-108 395.2 269 71.0
vmacro00722 Vaccinium macrocarpon HOM05D004821 ORTHO05D005711 3.2e-107 392.5 353 57.8
GSVIVG01038250001 Vitis vinifera HOM05D004821 ORTHO05D005711 4.6e-106 388.7 312 61.5
BcaB06g29509 Brassica carinata HOM05D004821 ORTHO05D005711 1.7e-105 386.7 295 64.7
AUR62002483 Chenopodium quinoa HOM05D004821 ORTHO05D005711 4.7e-103 378.6 351 55.3
Gorai.008G266600 Gossypium raimondii HOM05D004821 ORTHO05D005711 1.4e-102 377.1 302 60.3
Gohir.A12G247900 Gossypium hirsutum HOM05D004821 ORTHO05D005711 2.3e-102 376.3 292 61.3
AUR62023709 Chenopodium quinoa HOM05D004821 ORTHO05D005711 3.1e-102 375.9 300 62.7
Gohir.D12G248600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 2.6e-101 372.9 302 59.3
HanXRQChr03g0094031 Helianthus annuus HOM05D004821 ORTHO05D005711 4.4e-101 372.1 299 62.9
Thecc.05G001800 Theobroma cacao HOM05D004821 ORTHO05D005711 1.7e-100 370.2 321 58.6
Gohir.D11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 3.7e-100 369.0 293 63.1
Gohir.D08G113600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 6.4e-100 368.2 291 62.2
Gorai.004G122500 Gossypium raimondii HOM05D004821 ORTHO05D005711 1.1e-99 367.5 291 62.2
Lalb_Chr13g0304481 Lupinus albus HOM05D004821 ORTHO05D005711 9.2e-99 364.4 299 58.5
CDE02G4358 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 1.2e-98 364.0 295 60.3
Gohir.A08G102400 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.6e-98 363.6 286 62.2
HPP92_004517 Vanilla planifolia HOM05D004821 ORTHO05D005711 1.7e-97 360.1 320 54.4
Eucgr.L00828 Eucalyptus grandis HOM05D004821 ORTHO05D005711 3.4e-93 345.9 298 60.7
TAR362G0479 Trochodendron aralioides HOM05D004821 ORTHO05D005711 3.2e-91 339.3 317 55.8
MELO3C014389.2 Cucumis melo HOM05D004821 ORTHO05D005711 1.6e-90 337.0 257 60.3
Os02g0608900 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 2.8e-87 326.2 309 52.8
ATR0743G163 Amborella trichopoda HOM05D004821 ORTHO05D005711 9.9e-85 317.8 288 53.1
ECA232G4673 Erigeron canadensis HOM05D004821 ORTHO05D005711 9.9e-85 317.8 272 59.6
Duzib084G0132 Durio zibethinus HOM05D004821 ORTHO05D005711 4.9e-84 315.5 292 55.1
BcaC02g07141 Brassica carinata HOM05D004821 ORTHO05D005711 6.6e-81 305.1 305 56.7
HPP92_004526 Vanilla planifolia HOM05D004821 ORTHO05D005711 3.4e-77 292.7 276 52.2
Dinv24752 Davidia involucrata HOM05D004821 ORTHO05D005711 1.1e-75 287.7 241 61.8
Hund12277 Selenicereus undatus HOM05D004821 ORTHO05D005711 1.5e-72 277.3 248 55.2
Zm00001eb133840 Zea mays HOM05D004821 ORTHO05D005711 5.6e-72 275.4 372 41.7
Pp3c26_11540 Physcomitrium patens HOM05D004821 ORTHO05D005711 2.1e-71 273.5 288 45.5
SMO119G0235 Selaginella moellendorffii HOM05D004821 ORTHO05D005711 1.1e-70 271.2 289 45.0
Mapoly0065s0080 Marchantia polymorpha HOM05D004821 ORTHO05D005711 2.4e-70 270.0 292 46.2
Eucgr.D01249 Eucalyptus grandis HOM05D004821 ORTHO05D005711 4.0e-70 269.2 198 67.2
Pp3c3_3220 Physcomitrium patens HOM05D004821 ORTHO05D005711 1.3e-68 264.2 288 43.4
Eucgr.D01533 Eucalyptus grandis HOM05D004821 ORTHO05D005711 4.8e-63 245.7 200 63.0
AagrBONN_evm.TU.Sc2ySwM_362.2829 Anthoceros agrestis HOM05D004821 ORTHO05D005711 6.5e-60 235.3 277 43.0
Ah.07g203210 Amaranthus hybridus HOM05D004821 ORTHO05D005711 3.2e-59 233.0 161 67.1
Sc25g0003030 Simmondsia chinensis HOM05D004821 ORTHO05D005711 1.3e-57 227.6 263 45.6
Zm00001eb246750 Zea mays HOM05D004821 ORTHO05D005711 3.6e-50 203.0 241 48.1
RcHm_v2.0_Chr7g0203201 Rosa chinensis HOM05D004821 ORTHO05D005711 1.5e-45 187.6 174 54.0
Oeu053428.1 Olea europaea HOM05D004821 ORTHO05D005711 3.3e-40 169.9 114 76.3
CBR_g30320 Chara braunii HOM05D004821 ORTHO05D005711 1.4e-38 164.5 282 35.1
QL10p064343 Quercus lobata HOM05D004821 ORTHO05D005711 8.5e-36 155.2 107 69.2
Migut.G00919 Erythranthe guttata HOM05D004821 ORTHO05D005711 7.0e-30 135.6 114 65.8
Actinidia34565 Actinidia chinensis HOM05D004821 ORTHO05D005711 1.3e-28 131.3 68 86.8
FAN07G0128 Fragaria x ananassa HOM05D004821 ORTHO05D005711 6.5e-28 129.0 121 49.6
BcaB04g18803 Brassica carinata HOM05D004821 ORTHO05D005711 1.9e-27 127.5 73 78.1
MD09G1202400 Malus domestica HOM05D004821 ORTHO05D005711 4.0e-25 119.8 101 57.4
C07p46620 Brassica napus HOM05D004821 ORTHO05D005711 6.8e-25 119.0 92 60.9
BolC7t45177H Brassica oleracea HOM05D004821 ORTHO05D005711 6.8e-25 119.0 92 60.9
BcaC05g24570 Brassica carinata HOM05D000813 ORTHO05D004282 2.6e-24 117.1 76 69.7
BcaB01g03349 Brassica carinata HOM05D004821 ORTHO05D005711 5.4e-22 109.4 102 54.9
CARHR257120 Cardamine hirsuta HOM05D004821 ORTHO05D005711 7.0e-22 109.0 87 57.5
Ah.07g203220 Amaranthus hybridus HOM05D004821 ORTHO05D005711 3.5e-21 106.7 120 48.3
CDE09G1042 Ceratophyllum demersum HOM05D001480 ORTHO05D001331 8.5e-20 102.1 89 55.1
BcaC07g42475 Brassica carinata HOM05D004821 ORTHO05D005711 4.4e-16 89.7 58 72.4
BcaB02g11099 Brassica carinata HOM05D004821 ORTHO05D005711 3.7e-15 86.7 58 65.5
CDE09G1416 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 4.9e-15 86.3 176 33.0
unitig_92.g28210 Utricularia gibba HOM05D003449 ORTHO05D004133 5.0e-12 76.3 47 72.3
TAR362G0528 Trochodendron aralioides HOM05D004821 ORTHO05D005711 3.6e-10 70.1 66 56.1
BcaC06g33352 Brassica carinata HOM05D004821 ORTHO05D005711 7.5e-08 62.4 51 56.9
Actinidia39253 Actinidia chinensis HOM05D004821 ORTHO05D005711 9.8e-08 62.0 64 46.9
Os12g0225200 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 4.1e-06 56.6 90 33.3


User provided reference genes

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