Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold12G06218 Striga asiatica HOM05D005420 ORTHO05D006524 2.1e-163 578.9 294 100.0
SalBow3G4646 Salvia bowleyana HOM05D005420 ORTHO05D006524 2.3e-104 382.9 298 71.1
MSTRG.24552 Avicennia marina HOM05D005420 ORTHO05D006524 5.0e-104 381.7 292 72.6
Migut.G00921 Erythranthe guttata HOM05D005420 ORTHO05D006524 1.0e-101 374.0 283 72.4
Cc03_g15990 Coffea canephora HOM05D005420 ORTHO05D006524 7.8e-97 357.8 301 68.8
CSS0017727 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 5.0e-96 355.1 233 79.4
CSS0022736 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 4.3e-95 352.1 276 71.4
Rhsim09G0003700 Rhododendron simsii HOM05D005420 ORTHO05D006524 2.1e-94 349.7 234 80.3
Solyc08g015620.3 Solanum lycopersicum HOM05D005420 ORTHO05D006524 2.8e-94 349.4 240 77.9
Sopen08g005610 Solanum pennellii HOM05D005420 ORTHO05D006524 2.8e-94 349.4 240 77.9
unitig_27.g25143 Utricularia gibba HOM05D005420 ORTHO05D006524 2.8e-94 349.4 291 68.4
vmacro00721 Vaccinium macrocarpon HOM05D005420 ORTHO05D006524 6.2e-94 348.2 230 80.9
CiPaw.01G201600 Carya illinoinensis HOM05D005420 ORTHO05D006524 8.0e-94 347.8 216 85.2
Eucgr.H01455 Eucalyptus grandis HOM05D005420 ORTHO05D006524 2.3e-93 346.3 216 82.4
Aqoxy1G01859 Aquilegia oxysepala HOM05D005420 ORTHO05D006524 6.8e-93 344.7 207 85.5
Cfa008513 Carpinus fangiana HOM05D005420 ORTHO05D006524 6.8e-93 344.7 216 84.3
Dinv33245 Davidia involucrata HOM05D005420 ORTHO05D006524 1.5e-92 343.6 218 81.7
Nitab4.5_0000013g0040 Nicotiana tabacum HOM05D005420 ORTHO05D006524 1.5e-92 343.6 219 83.1
Atru.chr12.1712 Acer truncatum HOM05D005420 ORTHO05D006524 2.0e-92 343.2 243 76.1
Nitab4.5_0008205g0010 Nicotiana tabacum HOM05D005420 ORTHO05D006524 3.4e-92 342.4 264 72.0
CANSAT56G1087 Cannabis sativa HOM05D005420 ORTHO05D006524 4.4e-92 342.0 209 85.2
FAN23G1410 Fragaria x ananassa HOM05D005420 ORTHO05D006524 4.4e-92 342.0 216 81.0
Prupe.7G269700 Prunus persica HOM05D005420 ORTHO05D006524 5.8e-92 341.7 260 70.4
CiPaw.02G124600 Carya illinoinensis HOM05D005420 ORTHO05D006524 7.5e-92 341.3 216 81.9
FvH4_1g00160 Fragaria vesca HOM05D005420 ORTHO05D006524 7.5e-92 341.3 216 80.6
FAN26G3138 Fragaria x ananassa HOM05D005420 ORTHO05D006524 7.5e-92 341.3 216 81.0
FAN28G0609 Fragaria x ananassa HOM05D005420 ORTHO05D006524 7.5e-92 341.3 216 80.6
Peaxi162Scf01205g00032 Petunia axillaris HOM05D005420 ORTHO05D006524 7.5e-92 341.3 265 71.3
HanXRQChr11g0343501 Helianthus annuus HOM05D005420 ORTHO05D006524 9.8e-92 340.9 257 73.9
Glyma.07G273700 Glycine max HOM05D005420 ORTHO05D006524 1.3e-91 340.5 205 84.4
MD15G1143300 Malus domestica HOM05D005420 ORTHO05D006524 1.3e-91 340.5 302 63.6
Manes.12G003300 Manihot esculenta HOM05D005420 ORTHO05D006524 1.3e-91 340.5 201 87.1
Potri.013G084300 Populus trichocarpa HOM05D005420 ORTHO05D006524 1.3e-91 340.5 262 74.0
Actinidia34566 Actinidia chinensis HOM05D005420 ORTHO05D006524 1.7e-91 340.1 271 68.6
Ciclev10012405m.g Citrus clementina HOM05D005420 ORTHO05D006524 1.7e-91 340.1 216 81.0
DCAR_005460 Daucus carota HOM05D005420 ORTHO05D006524 1.7e-91 340.1 277 68.2
RcHm_v2.0_Chr2g0084451 Rosa chinensis HOM05D005420 ORTHO05D006524 1.7e-91 340.1 286 65.7
Ah.07g203200 Amaranthus hybridus HOM05D005420 ORTHO05D006524 2.9e-91 339.3 218 78.9
arahy.Tifrunner.gnm1.ann1.D6NWCJ Arachis hypogaea HOM05D005420 ORTHO05D006524 2.9e-91 339.3 206 84.5
arahy.Tifrunner.gnm1.ann1.EMGW5K Arachis hypogaea HOM05D005420 ORTHO05D006524 2.9e-91 339.3 206 84.5
Glyma.17G000800 Glycine max HOM05D005420 ORTHO05D006524 2.9e-91 339.3 205 83.9
QL10p064332 Quercus lobata HOM05D005420 ORTHO05D006524 2.9e-91 339.3 257 71.6
EL10Ac3g06165 Beta vulgaris HOM05D005420 ORTHO05D006524 4.9e-91 338.6 205 83.4
Cpa.g.sc151.6 Carica papaya HOM05D005420 ORTHO05D006524 4.9e-91 338.6 209 83.3
ECA248G1232 Erigeron canadensis HOM05D005420 ORTHO05D006524 4.9e-91 338.6 237 76.8
PGR119G0486 Punica granatum HOM05D005420 ORTHO05D006524 6.4e-91 338.2 203 84.7
VMungo1215G3385 Vigna mungo HOM05D005420 ORTHO05D006524 6.4e-91 338.2 256 71.9
MBI07_g10354_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 1.1e-90 337.4 209 82.8
Lsat_1_v5_gn_1_76981 Lactuca sativa HOM05D005420 ORTHO05D006524 1.4e-90 337.0 214 82.2
TAR636G0539 Trochodendron aralioides HOM05D005420 ORTHO05D006524 1.4e-90 337.0 301 63.8
CsaV3_7G022350 Cucumis sativus L. HOM05D005420 ORTHO05D006524 1.9e-90 336.7 215 81.9
MD00G1087500 Malus domestica HOM05D005420 ORTHO05D006524 4.1e-90 335.5 297 64.3
Sabra13G0078900 Salix brachista HOM05D005420 ORTHO05D006524 4.1e-90 335.5 246 75.2
GSVIVG01038249001 Vitis vinifera HOM05D005420 ORTHO05D006524 4.1e-90 335.5 209 83.3
ClCG09G014850 Citrullus lanatus HOM05D005420 ORTHO05D006524 5.4e-90 335.1 215 81.9
TWI36G0345 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 9.2e-90 334.3 207 82.6
AUR62023710 Chenopodium quinoa HOM05D005420 ORTHO05D006524 1.2e-89 334.0 216 78.7
Gohir.A02G106300 Gossypium hirsutum HOM05D005420 ORTHO05D006524 1.6e-89 333.6 280 68.6
Lj6C285T2 Lonicera japonica HOM05D005420 ORTHO05D006524 2.0e-89 333.2 203 85.7
Thecc.05G186000 Theobroma cacao HOM05D005420 ORTHO05D006524 2.0e-89 333.2 207 83.1
HanXRQChr01g0023651 Helianthus annuus HOM05D005420 ORTHO05D006524 2.7e-89 332.8 229 76.9
ATR0743G098 Amborella trichopoda HOM05D005420 ORTHO05D006524 4.6e-89 332.0 219 79.5
AUR62002482 Chenopodium quinoa HOM05D005420 ORTHO05D006524 4.6e-89 332.0 216 78.2
Gorai.003G088300 Gossypium raimondii HOM05D005420 ORTHO05D006524 6.0e-89 331.6 207 83.1
unitig_699.g19464 Utricularia gibba HOM05D005420 ORTHO05D006524 6.0e-89 331.6 199 85.9
Os01g0338600 Oryza sativa ssp. japonica HOM05D005420 ORTHO05D006524 7.8e-89 331.3 219 79.0
PSO675G2924 Papaver somniferum HOM05D005420 ORTHO05D006524 1.0e-88 330.9 286 65.4
PSO732G0217 Papaver somniferum HOM05D005420 ORTHO05D006524 1.0e-88 330.9 285 65.6
Duzib177G0155 Durio zibethinus HOM05D005420 ORTHO05D006524 1.3e-88 330.5 267 69.3
Lj4g0016379 Lotus japonicus HOM05D005420 ORTHO05D006524 1.7e-88 330.1 205 81.5
Sed0010932 Sechium edule HOM05D005420 ORTHO05D006524 3.0e-88 329.3 269 69.5
Actinidia18399 Actinidia chinensis HOM05D005420 ORTHO05D006524 3.9e-88 328.9 260 70.0
BolC4t22118H Brassica oleracea HOM05D005420 ORTHO05D006524 3.9e-88 328.9 199 85.9
Gohir.D03G071700 Gossypium hirsutum HOM05D005420 ORTHO05D006524 3.9e-88 328.9 280 67.5
Phvul.003G074600 Phaseolus vulgaris HOM05D005420 ORTHO05D006524 3.9e-88 328.9 203 82.8
GSVIVG01026140001 Vitis vinifera HOM05D005420 ORTHO05D006524 5.0e-88 328.6 216 77.8
TAR365G1242 Trochodendron aralioides HOM05D005420 ORTHO05D006524 6.6e-88 328.2 253 70.8
AL4G42820 Arabidopsis lyrata HOM05D005420 ORTHO05D006524 1.1e-87 327.4 198 84.8
A05p04100 Brassica napus HOM05D005420 ORTHO05D006524 1.1e-87 327.4 260 68.8
BraA05t19397Z Brassica rapa HOM05D005420 ORTHO05D006524 1.1e-87 327.4 259 68.7
Carub.0004s2651 Capsella rubella HOM05D005420 ORTHO05D006524 1.1e-87 327.4 198 84.8
Thhalv10001571m.g Eutrema salsugineum HOM05D005420 ORTHO05D006524 1.1e-87 327.4 198 84.8
A03p24600 Brassica napus HOM05D005420 ORTHO05D006524 1.5e-87 327.0 198 84.3
THA.LOC104804283 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 1.5e-87 327.0 214 79.4
CDE09G0694 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 1.9e-87 326.6 239 72.0
CARHR139120 Cardamine hirsuta HOM05D005420 ORTHO05D006524 2.5e-87 326.2 212 80.7
THA.LOC104802345 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 3.3e-87 325.9 198 84.3
BcaC02g12350 Brassica carinata HOM05D005420 ORTHO05D006524 4.3e-87 325.5 257 70.0
AT2G43945 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 5.6e-87 325.1 256 69.5
C04p04880 Brassica napus HOM05D005420 ORTHO05D006524 5.6e-87 325.1 257 70.0
Zm00001eb159810 Zea mays HOM05D005420 ORTHO05D006524 5.6e-87 325.1 201 83.6
BcaB02g08884 Brassica carinata HOM05D005420 ORTHO05D006524 7.3e-87 324.7 202 84.2
C03p29330 Brassica napus HOM05D005420 ORTHO05D006524 1.2e-86 323.9 257 69.6
BolC3t15280H Brassica oleracea HOM05D005420 ORTHO05D006524 1.2e-86 323.9 257 69.6
Aa31LG1G25640 Aethionema arabicum HOM05D005420 ORTHO05D006524 2.1e-86 323.2 198 85.4
Carub.0005s2660 Capsella rubella HOM05D005420 ORTHO05D006524 2.1e-86 323.2 210 79.5
BcaB06g29350 Brassica carinata HOM05D005420 ORTHO05D006524 2.8e-86 322.8 199 84.4
BraA03t11665Z Brassica rapa HOM05D005420 ORTHO05D006524 2.8e-86 322.8 198 83.3
Psat4g001320 Pisum sativum HOM05D005420 ORTHO05D006524 2.8e-86 322.8 262 68.3
Duzib128G1088 Durio zibethinus HOM05D005420 ORTHO05D006524 4.7e-86 322.0 201 82.6
HPP92_024700 Vanilla planifolia HOM05D005420 ORTHO05D006524 1.8e-85 320.1 274 66.1
AT3G59870 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 6.8e-85 318.2 210 78.1
Aa31LG10G14100 Aethionema arabicum HOM05D005420 ORTHO05D006524 2.0e-84 316.6 267 65.9
Mapoly0136s0029 Marchantia polymorpha HOM05D005420 ORTHO05D006524 1.1e-82 310.8 212 75.5
SEGI_26827 Sequoiadendron giganteum HOM05D005420 ORTHO05D006524 1.1e-82 310.8 199 80.4
TWI36G1305 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 1.1e-82 310.8 211 76.8
Pp3c8_21410 Physcomitrium patens HOM05D005420 ORTHO05D006524 4.1e-82 308.9 208 75.0
SMO367G0538 Selaginella moellendorffii HOM05D005420 ORTHO05D006524 1.0e-80 304.3 191 81.2
Sp4g26040 Schrenkiella parvula HOM05D005420 ORTHO05D006524 1.3e-80 303.9 185 84.3
Pp3c24_16460 Physcomitrium patens HOM05D005420 ORTHO05D006524 8.6e-80 301.2 216 72.2
Haze_11131 Corylus avellana HOM05D005420 ORTHO05D006524 1.1e-77 294.3 155 96.1
Migut.N03031 Erythranthe guttata HOM05D005420 ORTHO05D006524 7.6e-76 288.1 282 60.6
Manes.13G003200 Manihot esculenta HOM05D005420 ORTHO05D006524 7.6e-76 288.1 157 93.0
TPR.G6015 Trifolium pratense HOM05D005420 ORTHO05D006524 3.8e-75 285.8 185 82.7
Nn7g37463 Nelumbo nucifera HOM05D005420 ORTHO05D006524 1.1e-71 274.2 184 77.2
Dinv24753 Davidia involucrata HOM05D005420 ORTHO05D006524 1.8e-69 266.9 221 67.0
Nn3g18334 Nelumbo nucifera HOM05D005420 ORTHO05D006524 8.4e-67 258.1 255 60.8
Lalb_Chr18g0044961 Lupinus albus HOM05D005420 ORTHO05D006524 3.5e-65 252.7 134 95.5
MCO05G102 Micromonas commoda HOM05D005420 ORTHO05D006524 6.0e-65 251.9 160 76.9
Sc25g0003040 Simmondsia chinensis HOM05D005420 ORTHO05D006524 6.0e-65 251.9 186 71.0
Cre16.g676450 Chlamydomonas reinhardtii HOM05D005420 ORTHO05D006524 1.5e-63 247.3 192 66.1
Hund22588 Selenicereus undatus HOM05D005420 ORTHO05D006524 2.5e-63 246.5 182 72.0
Medtr4g134910 Medicago truncatula HOM05D005420 ORTHO05D006524 9.6e-63 244.6 161 80.1
Zm00001eb356860 Zea mays HOM05D005420 ORTHO05D006524 2.0e-60 236.9 283 54.1
PRCOL_00006877 Prasinoderma coloniale HOM05D005420 ORTHO05D006524 3.4e-60 236.1 160 71.9
Atru.chr12.1711 Acer truncatum HOM05D005420 ORTHO05D006524 6.4e-59 231.9 191 69.1
Oeu022910.1 Olea europaea HOM05D005420 ORTHO05D006524 5.1e-56 222.2 141 83.7
Ca_13540_v3 Cicer arietinum L. HOM05D005420 ORTHO05D006524 2.1e-46 190.3 242 52.5
AagrBONN_evm.TU.Sc2ySwM_228.1821 Anthoceros agrestis HOM05D005420 ORTHO05D006524 7.6e-44 181.8 122 77.0
Sed0016168 Sechium edule HOM05D005420 ORTHO05D006524 1.9e-39 167.2 90 94.4
MBI07_g42072_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 2.8e-38 163.3 89 91.0
Pp3c20_1670 Physcomitrium patens HOM05D005420 ORTHO05D006524 1.3e-32 144.4 164 48.8
CDE02G3676 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 1.8e-32 144.1 164 54.3
Eucgr.L00810 Eucalyptus grandis HOM05D005420 ORTHO05D006524 2.2e-27 127.1 101 65.3
Lsat_1_v5_gn_1_75001 Lactuca sativa HOM05D005420 ORTHO05D006524 7.9e-25 118.6 78 74.4
Eucgr.H01440 Eucalyptus grandis HOM05D005420 ORTHO05D006524 1.4e-24 117.9 101 61.4
Lsat_1_v5_gn_5_160100 Lactuca sativa HOM05D005420 ORTHO05D006524 3.3e-23 113.2 78 70.5
MSTRG.9265 Avicennia marina HOM05D005420 ORTHO05D006524 1.5e-20 104.4 95 65.3
CBR_g10867 Chara braunii HOM05D005420 ORTHO05D006524 6.1e-17 92.4 153 40.5


User provided reference genes

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