Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold12G06190 Striga asiatica HOM05D011891 ORTHO05D014146 5.0e-102 374.4 185 100.0
Os09g0518266 Oryza sativa ssp. japonica HOM05D011891 ORTHO05D014146 1.3e-33 147.1 163 52.1
MBI07_g06919_MAGBIO Magnolia biondii HOM05D011891 ORTHO05D014146 1.1e-24 117.5 123 56.1
MBI07_g29092_MAGBIO Magnolia biondii HOM05D011891 ORTHO05D014146 2.0e-21 106.7 133 51.1
MBI07_g02631_MAGBIO Magnolia biondii HOM05D011891 ORTHO05D014146 3.7e-20 102.4 124 50.8
Thecc.02G108600 Theobroma cacao HOM05D011891 ORTHO05D014146 8.5e-17 91.3 125 43.2
Os03g0693650 Oryza sativa ssp. japonica HOM05D011891 ORTHO05D014146 7.2e-16 88.2 94 55.3
MBI02_g27281_MAGBIO Magnolia biondii HOM05D000027 ORTHO05D000066 1.2e-13 80.9 118 42.4
Zm00001eb117540 Zea mays HOM05D010444 ORTHO05D010602 2.6e-13 79.7 134 41.8
SGA_v2.0_scaffold127G34043 Striga asiatica HOM05D011891 ORTHO05D014146 1.3e-12 77.4 117 43.6
SGA_v2.0_scaffold66G22474 Striga asiatica HOM05D011891 ORTHO05D010602 1.7e-12 77.0 160 38.1
CiPaw.09G003700 Carya illinoinensis HOM05D014563 ORTHO05D010602 2.2e-12 76.6 188 35.1
Zm00001eb244580 Zea mays HOM05D011587 ORTHO05D010602 2.2e-12 76.6 180 37.8
CiPaw.05G034500 Carya illinoinensis HOM05D011587 ORTHO05D010602 6.3e-12 75.1 151 37.1
MELO3C031770.2 Cucumis melo HOM05D011891 ORTHO05D014146 6.3e-12 75.1 142 43.0
Zm00001eb279500 Zea mays HOM05D031261 ORTHO05D010602 1.4e-11 73.9 198 32.3
CiPaw.10G145000 Carya illinoinensis HOM05D011587 ORTHO05D010602 3.1e-11 72.8 152 35.5
Os02g0578201 Oryza sativa ssp. japonica HOM05D011587 ORTHO05D010602 4.1e-11 72.4 172 34.9
MBI05_g34728_MAGBIO Magnolia biondii HOM05D011587 ORTHO05D010602 2.7e-10 69.7 172 33.7
SGA_v2.0_scaffold181G39744 Striga asiatica HOM05D010444 ORTHO05D010602 4.5e-10 68.9 99 44.4
Manes.12G036450 Manihot esculenta HOM05D014563 ORTHO05D010602 5.9e-10 68.6 171 34.5
SGA_v2.0_scaffold413G51163 Striga asiatica HOM05D010444 ORTHO05D051413 1.0e-09 67.8 130 40.8
Zm00001eb353630 Zea mays HOM05D010444 ORTHO05D010602 1.0e-09 67.8 144 38.2
ATR0787G152 Amborella trichopoda HOM05D015573 ORTHO05D010602 1.3e-09 67.4 103 45.6
CiPaw.15G057400 Carya illinoinensis HOM05D014563 ORTHO05D010602 1.3e-09 67.4 103 42.7
Eucgr.H04761 Eucalyptus grandis HOM05D011587 ORTHO05D010602 1.3e-09 67.4 106 42.5
CSS0015059 Camellia sinensis var. sinensis HOM05D031598 ORTHO05D014146 1.7e-09 67.0 63 54.0
FAN14G5886 Fragaria x ananassa HOM05D010444 ORTHO05D010602 6.5e-09 65.1 123 40.7
Os06g0343500 Oryza sativa ssp. japonica HOM05D010444 ORTHO05D010602 6.5e-09 65.1 184 32.1
SGA_v2.0_scaffold96G28940 Striga asiatica HOM05D015573 ORTHO05D017203 1.9e-08 63.5 116 41.4
Os01g0735450 Oryza sativa ssp. japonica HOM05D010444 ORTHO05D010602 2.5e-08 63.2 102 38.2
Zm00001eb323950 Zea mays HOM05D010444 ORTHO05D010602 2.5e-08 63.2 186 36.6
Os07g0503200 Oryza sativa ssp. japonica HOM05D010444 ORTHO05D010602 7.2e-08 61.6 81 49.4
HanXRQChr03g0091821 Helianthus annuus HOM05D010444 ORTHO05D010602 2.1e-07 60.1 69 43.5
MBI15_g27554_MAGBIO Magnolia biondii HOM05D010444 ORTHO05D010602 2.8e-07 59.7 193 33.7
MBI17_g19025_MAGBIO Magnolia biondii HOM05D014563 ORTHO05D010602 2.8e-07 59.7 116 38.8
Manes.01G120601 Manihot esculenta HOM05D014563 ORTHO05D010602 3.6e-07 59.3 186 34.4
Os04g0523650 Oryza sativa ssp. japonica HOM05D031261 ORTHO05D010602 6.1e-07 58.5 123 38.2
SalBow4G0826 Salvia bowleyana HOM05D011891 ORTHO05D014146 1.0e-06 57.8 69 49.3
MBI14_g08068_MAGBIO Magnolia biondii HOM05D010444 ORTHO05D010602 8.8e-06 54.7 145 37.2
SGA_v2.0_scaffold393G50704 Striga asiatica HOM05D010444 ORTHO05D010602 8.8e-06 54.7 85 40.0


User provided reference genes

Program Settings