Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold12G06170 Striga asiatica HOM05D001043 ORTHO05D006432 1.5e-272 942.2 454 100.0
SalBow3G3815 Salvia bowleyana HOM05D001043 ORTHO05D006432 3.3e-211 738.4 456 76.1
Oeu022683.1 Olea europaea HOM05D001043 ORTHO05D006432 9.9e-200 700.3 456 72.6
Oeu027753.1 Olea europaea HOM05D001043 ORTHO05D006432 9.2e-198 693.7 456 71.7
MSTRG.9754 Avicennia marina HOM05D001043 ORTHO05D006432 3.0e-196 688.7 456 72.1
Peaxi162Scf00180g00029 Petunia axillaris HOM05D001043 ORTHO05D006432 7.3e-195 684.1 456 71.1
Nitab4.5_0006064g0010 Nicotiana tabacum HOM05D001043 ORTHO05D006432 1.4e-193 679.9 456 70.8
Nitab4.5_0001586g0110 Nicotiana tabacum HOM05D001043 ORTHO05D006432 1.7e-188 662.9 456 70.2
Sopen06g018400 Solanum pennellii HOM05D001043 ORTHO05D006432 7.6e-184 647.5 456 67.8
CAN.G136.20 Capsicum annuum HOM05D001043 ORTHO05D006432 3.8e-183 645.2 456 67.1
PGSC0003DMG400016341 Solanum tuberosum HOM05D001043 ORTHO05D006432 8.4e-183 644.0 456 66.9
Solyc06g053340.3 Solanum lycopersicum HOM05D001043 ORTHO05D006432 5.1e-180 634.8 456 66.2
Cc03_g12190 Coffea canephora HOM05D001043 ORTHO05D006432 6.6e-180 634.4 455 65.7
Duzib212G0937 Durio zibethinus HOM05D001043 ORTHO05D006432 6.2e-178 627.9 456 65.4
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 3.8e-175 618.6 456 65.8
QL10p050774 Quercus lobata HOM05D001043 ORTHO05D006432 1.1e-174 617.1 455 64.0
SalBow3G1676 Salvia bowleyana HOM05D001043 ORTHO05D006432 1.1e-174 617.1 365 78.9
Thecc.04G175400 Theobroma cacao HOM05D001043 ORTHO05D006432 1.0e-172 610.5 456 64.5
Actinidia27085 Actinidia chinensis HOM05D001043 ORTHO05D006432 6.7e-172 607.8 456 64.0
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 8.7e-172 607.4 456 62.5
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 1.1e-171 607.1 454 62.1
Dinv44154 Davidia involucrata HOM05D001043 ORTHO05D006432 7.4e-171 604.4 439 65.4
arahy.Tifrunner.gnm1.ann1.41HRQM Arachis hypogaea HOM05D001043 ORTHO05D006432 1.4e-169 600.1 456 62.1
arahy.Tifrunner.gnm1.ann1.AV1GYT Arachis hypogaea HOM05D001043 ORTHO05D006432 9.0e-169 597.4 456 61.6
Cpa.g.sc9.315 Carica papaya HOM05D001043 ORTHO05D006432 9.0e-169 597.4 456 62.5
Nn7g38145 Nelumbo nucifera HOM05D001043 ORTHO05D006432 7.6e-168 594.3 456 59.6
Lsat_1_v5_gn_3_125361 Lactuca sativa HOM05D001043 ORTHO05D006432 2.9e-167 592.4 456 61.6
Hma1.2p1_2415F.1_g321710 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 3.8e-167 592.0 454 62.3
Ciclev10020184m.g Citrus clementina HOM05D001043 ORTHO05D006432 1.4e-166 590.1 456 61.0
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 7.1e-166 587.8 458 62.0
Potri.017G027000 Populus trichocarpa HOM05D001043 ORTHO05D006432 6.0e-165 584.7 456 62.7
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 7.9e-165 584.3 455 60.2
Cfa015192 Carpinus fangiana HOM05D001043 ORTHO05D006432 1.0e-164 583.9 454 61.5
MD04G1044900 Malus domestica HOM05D001043 ORTHO05D006432 1.1e-163 580.5 456 60.7
FAN12G0575 Fragaria x ananassa HOM05D001043 ORTHO05D006432 3.3e-163 578.9 457 60.4
FAN17G1903 Fragaria x ananassa HOM05D001043 ORTHO05D006432 4.3e-163 578.6 457 60.0
Duzib268G1183 Durio zibethinus HOM05D001043 ORTHO05D006432 7.4e-163 577.8 459 61.9
Gorai.005G015800 Gossypium raimondii HOM05D001043 ORTHO05D006432 1.3e-162 577.0 454 60.4
RcHm_v2.0_Chr4g0406481 Rosa chinensis HOM05D001043 ORTHO05D006432 1.3e-162 577.0 457 60.6
Sc19g0002850 Simmondsia chinensis HOM05D001043 ORTHO05D006432 1.3e-162 577.0 456 60.3
FvH4_4g10900 Fragaria vesca HOM05D001043 ORTHO05D006432 1.6e-162 576.6 457 60.2
PSO832G3319 Papaver somniferum HOM05D001043 ORTHO05D006432 3.7e-162 575.5 454 59.7
THA.LOC104800885 Tarenaya hassleriana HOM05D001043 ORTHO05D006432 3.7e-162 575.5 456 59.6
Gohir.D02G012400 Gossypium hirsutum HOM05D001043 ORTHO05D006432 6.2e-162 574.7 454 60.4
Lj3A0G11 Lonicera japonica HOM05D001043 ORTHO05D006432 6.2e-162 574.7 432 62.7
Haze_01462 Corylus avellana HOM05D001043 ORTHO05D006432 8.2e-162 574.3 487 58.3
TAR365G1116 Trochodendron aralioides HOM05D001043 ORTHO05D006432 1.1e-161 573.9 456 59.6
Potri.007G130900 Populus trichocarpa HOM05D001043 ORTHO05D006432 1.8e-161 573.2 456 60.5
Sabra07G0106300 Salix brachista HOM05D001043 ORTHO05D006432 6.9e-161 571.2 501 56.3
Gohir.A02G011600 Gossypium hirsutum HOM05D001043 ORTHO05D006432 1.2e-160 570.5 454 60.1
PSO210G3503 Papaver somniferum HOM05D001043 ORTHO05D006432 7.6e-160 567.8 454 58.8
Migut.G01345 Erythranthe guttata HOM05D001043 ORTHO05D006432 1.3e-159 567.0 399 69.2
Medtr4g068130 Medicago truncatula HOM05D001043 ORTHO05D006432 4.9e-159 565.1 456 58.1
TPR.G34197 Trifolium pratense HOM05D001043 ORTHO05D006432 4.9e-159 565.1 458 58.3
MBI07_g18520_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 1.9e-158 563.1 455 60.0
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 3.2e-158 562.4 458 57.2
TAR636G2727 Trochodendron aralioides HOM05D001043 ORTHO05D006432 4.2e-158 562.0 456 57.9
Eucgr.H00342 Eucalyptus grandis HOM05D001043 ORTHO05D006432 2.7e-157 559.3 456 57.5
Lalb_Chr01g0003101 Lupinus albus HOM05D001043 ORTHO05D006432 1.0e-156 557.4 454 57.3
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 1.8e-156 556.6 456 57.5
Lj3g0012550 Lotus japonicus HOM05D001043 ORTHO05D006432 1.8e-156 556.6 457 58.4
CANSAT78G0880 Cannabis sativa HOM05D001043 ORTHO05D006432 5.1e-156 555.1 460 58.3
AL1G16060 Arabidopsis lyrata HOM05D001043 ORTHO05D006432 8.7e-156 554.3 456 58.3
AT1G06110 Arabidopsis thaliana HOM05D001043 ORTHO05D006432 1.5e-155 553.5 457 57.8
Sed0013039 Sechium edule HOM05D001043 ORTHO05D006432 4.3e-155 552.0 458 58.3
Sp1g04910 Schrenkiella parvula HOM05D001043 ORTHO05D006432 9.7e-155 550.8 456 58.1
VMungo1127G0978 Vigna mungo HOM05D001043 ORTHO05D006432 4.8e-154 548.5 456 57.2
Ca_20798_v3 Cicer arietinum L. HOM05D001043 ORTHO05D006432 1.4e-153 547.0 459 57.5
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 5.9e-152 541.6 458 56.3
CARHR005620 Cardamine hirsuta HOM05D001043 ORTHO05D006432 6.5e-151 538.1 457 56.5
C08p02400 Brassica napus HOM05D001043 ORTHO05D006432 3.2e-150 535.8 458 57.4
BolC8t47032H Brassica oleracea HOM05D001043 ORTHO05D006432 3.2e-150 535.8 458 57.4
Thhalv10007687m.g Eutrema salsugineum HOM05D001043 ORTHO05D006432 4.2e-150 535.4 456 56.1
EL10Ac3g06009 Beta vulgaris HOM05D001043 ORTHO05D006432 5.5e-150 535.0 456 55.9
Rhsim02G0082300 Rhododendron simsii HOM05D001043 ORTHO05D006432 7.2e-150 534.6 449 59.5
A08p36110 Brassica napus HOM05D001043 ORTHO05D006432 1.2e-149 533.9 456 57.0
BraA08t35518Z Brassica rapa HOM05D001043 ORTHO05D006432 1.2e-149 533.9 456 57.0
Rhsim02G0082200 Rhododendron simsii HOM05D001043 ORTHO05D006432 4.6e-149 531.9 454 59.0
SalBow3G2442 Salvia bowleyana HOM05D001043 ORTHO05D006432 7.9e-149 531.2 314 79.9
Aqoxy5G00006 Aquilegia oxysepala HOM05D001043 ORTHO05D006432 3.9e-148 528.9 456 56.6
Glyma.11G126500 Glycine max HOM05D001043 ORTHO05D006432 5.1e-148 528.5 430 57.7
Dinv05076 Davidia involucrata HOM05D001043 ORTHO05D006432 1.7e-146 523.5 365 66.8
ClCG05G007210 Citrullus lanatus HOM05D001043 ORTHO05D006432 3.7e-146 522.3 458 56.6
Carub.0001s0544 Capsella rubella HOM05D001043 ORTHO05D006432 4.8e-146 521.9 456 55.3
AUR62002348 Chenopodium quinoa HOM05D001043 ORTHO05D006432 3.1e-145 519.2 456 55.3
Aa31LG1G7110 Aethionema arabicum HOM05D001043 ORTHO05D006432 1.3e-143 513.8 471 53.7
MELO3C006795.2 Cucumis melo HOM05D001043 ORTHO05D006432 3.8e-143 512.3 458 55.2
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 2.5e-142 509.6 451 55.4
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 9.4e-142 507.7 456 54.6
Prupe.1G197800 Prunus persica HOM05D001043 ORTHO05D006432 2.7e-141 506.1 395 61.0
CiPaw.01G096300 Carya illinoinensis HOM05D001043 ORTHO05D006432 6.7e-140 501.5 434 58.1
CsaV3_3G015970 Cucumis sativus L. HOM05D001043 ORTHO05D006432 2.4e-137 493.0 415 57.8
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 1.0e-135 487.6 368 62.2
Hma1.2p1_2415F.1_g321720 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 1.7e-135 486.9 392 59.4
CDE07G0303 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 1.6e-133 480.3 456 50.9
SHI29125 Sapria himalayana HOM05D001043 ORTHO05D006432 2.3e-132 476.5 458 53.3
Ah.04g153480 Amaranthus hybridus HOM05D001043 ORTHO05D006432 1.5e-131 473.8 454 51.5
GSVIVG01010840001 Vitis vinifera HOM05D001043 ORTHO05D006432 2.6e-131 473.0 454 52.9
Os11g0265200 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 4.8e-130 468.8 457 51.2
Psat7g209600 Pisum sativum HOM05D001043 ORTHO05D006432 4.8e-130 468.8 393 57.5
ATR0743G191 Amborella trichopoda HOM05D001043 ORTHO05D006432 9.1e-129 464.5 456 50.4
Phvul.011G053400 Phaseolus vulgaris HOM05D001043 ORTHO05D006432 1.7e-127 460.3 417 54.2
BcaC05g24309 Brassica carinata HOM05D001043 ORTHO05D006432 5.5e-126 455.3 457 50.3
C05p04390 Brassica napus HOM05D001043 ORTHO05D006432 5.5e-126 455.3 457 50.3
BolC5t29212H Brassica oleracea HOM05D001043 ORTHO05D006432 5.5e-126 455.3 457 50.3
GSVIVG01010839001 Vitis vinifera HOM05D001043 ORTHO05D006432 5.2e-124 448.7 454 52.2
FAN07G1629 Fragaria x ananassa HOM05D001043 ORTHO05D006432 5.0e-119 432.2 457 48.8
Actinidia26504 Actinidia chinensis HOM05D001043 ORTHO05D006432 4.2e-118 429.1 429 51.7
HPP92_004532 Vanilla planifolia HOM05D001043 ORTHO05D006432 5.2e-116 422.2 473 45.9
BcaB02g06824 Brassica carinata HOM05D001043 ORTHO05D006432 1.5e-115 420.6 460 48.0
HPP92_004523 Vanilla planifolia HOM05D001043 ORTHO05D006432 7.7e-112 408.3 468 45.1
MBI11_g10483_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 2.8e-109 399.8 449 47.2
DCAR_028429 Daucus carota HOM05D001043 ORTHO05D006432 1.2e-107 394.4 320 61.6
HanXRQChr09g0262091 Helianthus annuus HOM05D001043 ORTHO05D006432 1.2e-99 367.9 320 57.5
BraA10t42737Z Brassica rapa HOM05D001043 ORTHO05D006432 8.3e-98 361.7 458 43.7
Pp3c5_14310 Physcomitrium patens HOM05D001043 ORTHO05D006432 4.6e-96 355.9 454 41.6
QL10p050755 Quercus lobata HOM05D001043 ORTHO05D006432 5.0e-95 352.4 231 70.1
Zm00001eb168760 Zea mays HOM05D001043 ORTHO05D006432 4.1e-89 332.8 456 40.6
Mapoly0014s0053 Marchantia polymorpha HOM05D001043 ORTHO05D006432 6.0e-88 328.9 436 40.4
Ciclev10023406m.g Citrus clementina HOM05D001043 ORTHO05D006432 1.0e-87 328.2 355 48.5
A10p04730 Brassica napus HOM05D001043 ORTHO05D006432 1.7e-87 327.4 458 42.4
SMO203G0209 Selaginella moellendorffii HOM05D001043 ORTHO05D006432 3.0e-87 326.6 446 40.1
CDE04G0865 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 1.1e-86 324.7 448 39.3
COL.COLO4_10086 Corchorus olitorius HOM05D001043 ORTHO05D006432 3.3e-86 323.2 394 44.7
Lj3A33G11 Lonicera japonica HOM05D001043 ORTHO05D006432 2.3e-84 317.0 256 59.0
Os11g0264700 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 4.0e-84 316.2 455 40.7
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 8.1e-77 292.0 184 72.3
Rhsim02G0082000 Rhododendron simsii HOM05D000432 ORTHO05D000320 1.9e-70 270.8 322 45.7
Hma1.2p1_1466F.1_g285390 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 3.3e-70 270.0 230 56.5
CBR_g726 Chara braunii HOM05D001043 ORTHO05D006432 4.5e-59 233.0 516 31.4
Cre01.g005900 Chlamydomonas reinhardtii HOM05D001043 ORTHO05D006432 1.1e-57 228.4 493 33.5
Lj3A33G10 Lonicera japonica HOM05D001043 ORTHO05D006432 1.8e-55 221.1 146 69.2
CiPaw.02G052100 Carya illinoinensis HOM05D001043 ORTHO05D006432 9.3e-49 198.7 192 51.6
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 7.4e-38 162.5 481 29.9
SEGI_03011 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 7.7e-35 152.5 137 51.8
HanXRQChr09g0262081 Helianthus annuus HOM05D001043 ORTHO05D006432 9.4e-33 145.6 100 63.0
HanXRQChr09g0250561 Helianthus annuus HOM05D001043 ORTHO05D006432 9.1e-28 129.0 93 64.5
DCAR_028430 Daucus carota HOM05D001043 ORTHO05D006432 1.1e-25 122.1 73 71.2
PGR142G2310 Punica granatum HOM05D001043 ORTHO05D006432 2.2e-21 107.8 72 59.7
HanXRQChr12g0370191 Helianthus annuus HOM05D001043 ORTHO05D006432 7.0e-12 76.3 71 50.7
MCO09G831 Micromonas commoda HOM05D001043 ORTHO05D006432 1.2e-08 65.5 92 40.2
Aqoxy3G02888 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 4.7e-08 63.5 141 30.5
arahy.Tifrunner.gnm1.ann1.HN9NVD Arachis hypogaea HOM05D006234 ORTHO05D007813 2.6e-06 57.8 143 30.1
Phvul.009G177500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 5.7e-06 56.6 140 30.7
CSS0005517 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 9.7e-06 55.8 33 78.8


User provided reference genes

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