Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold12G06156 Striga asiatica HOM05D004311 ORTHO05D005145 4.4e-308 1060.4 535 100.0
SalBow3G3821 Salvia bowleyana HOM05D004311 ORTHO05D005145 4.7e-132 475.7 578 49.8
Migut.G01038 Erythranthe guttata HOM05D004311 ORTHO05D005145 2.5e-125 453.4 561 49.9
MSTRG.20570 Avicennia marina HOM05D004311 ORTHO05D005145 7.4e-122 441.8 590 48.8
Actinidia35905 Actinidia chinensis HOM05D004311 ORTHO05D005145 1.0e-94 351.7 473 45.0
unitig_8.g3035 Utricularia gibba HOM05D004311 ORTHO05D005145 9.5e-93 345.1 433 48.5
Ciclev10019191m.g Citrus clementina HOM05D004311 ORTHO05D005145 1.5e-90 337.8 439 46.5
CiPaw.01G102900 Carya illinoinensis HOM05D004311 ORTHO05D005145 4.4e-90 336.3 470 44.0
Atru.chr5.2612 Acer truncatum HOM05D004311 ORTHO05D005145 3.7e-89 333.2 438 47.3
Peaxi162Scf00319g00915 Petunia axillaris HOM05D004311 ORTHO05D005145 4.9e-89 332.8 528 43.6
Sopen09g036480 Solanum pennellii HOM05D004311 ORTHO05D005145 4.9e-89 332.8 406 50.7
Cc03_g13030 Coffea canephora HOM05D004311 ORTHO05D005145 3.2e-88 330.1 446 45.3
Solyc09g098560.2 Solanum lycopersicum HOM05D004311 ORTHO05D005145 4.1e-88 329.7 403 50.4
Haze_00714 Corylus avellana HOM05D004311 ORTHO05D005145 9.2e-88 328.6 519 42.6
Atru.chr3.1596 Acer truncatum HOM05D004311 ORTHO05D005145 1.2e-87 328.2 425 48.0
Duzib268G0197 Durio zibethinus HOM05D004311 ORTHO05D005145 3.9e-86 323.2 427 46.8
CAN.G710.65 Capsicum annuum HOM05D004311 ORTHO05D005145 7.3e-85 318.9 436 46.8
Rhsim09G0031800 Rhododendron simsii HOM05D004311 ORTHO05D005145 1.2e-84 318.2 556 39.2
GSVIVG01013563001 Vitis vinifera HOM05D004311 ORTHO05D005145 1.6e-84 317.8 466 45.3
Thecc.04G184200 Theobroma cacao HOM05D004311 ORTHO05D005145 4.7e-84 316.2 463 43.6
Gorai.011G145800 Gossypium raimondii HOM05D004311 ORTHO05D005145 6.2e-84 315.8 429 47.3
Lsat_1_v5_gn_6_54900 Lactuca sativa HOM05D004311 ORTHO05D005145 1.1e-83 315.1 449 41.9
Manes.11G116001 Manihot esculenta HOM05D004311 ORTHO05D005145 2.3e-83 313.9 433 46.0
Cfa015780 Carpinus fangiana HOM05D004311 ORTHO05D005145 8.9e-83 312.0 470 42.3
Gohir.A10G134400 Gossypium hirsutum HOM05D004311 ORTHO05D005145 8.9e-83 312.0 429 46.9
Gohir.D10G132100 Gossypium hirsutum HOM05D004311 ORTHO05D005145 2.0e-82 310.8 429 47.3
Nitab4.5_0006710g0020 Nicotiana tabacum HOM05D004311 ORTHO05D005145 2.6e-82 310.5 450 45.3
TWI34G1341 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 7.5e-82 308.9 512 41.2
Eucgr.A00251 Eucalyptus grandis HOM05D004311 ORTHO05D005145 1.3e-81 308.1 457 43.3
arahy.Tifrunner.gnm1.ann1.TTS68P Arachis hypogaea HOM05D004311 ORTHO05D005145 1.7e-81 307.8 516 42.2
Potri.017G036200 Populus trichocarpa HOM05D004311 ORTHO05D005145 2.9e-81 307.0 432 44.7
CANSAT11G1749 Cannabis sativa HOM05D004311 ORTHO05D005145 6.4e-81 305.8 429 46.4
Potri.007G124150 Populus trichocarpa HOM05D004311 ORTHO05D005145 1.4e-80 304.7 432 44.4
arahy.Tifrunner.gnm1.ann1.D3CYL9 Arachis hypogaea HOM05D004311 ORTHO05D005145 1.9e-80 304.3 475 43.6
Ca_11399_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 4.1e-80 303.1 454 43.8
Ca_11402_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 4.1e-80 303.1 454 43.8
Ca_29593_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 4.1e-80 303.1 454 43.8
HanXRQChr07g0186701 Helianthus annuus HOM05D004311 ORTHO05D005145 4.1e-80 303.1 451 43.9
Dinv44218 Davidia involucrata HOM05D004311 ORTHO05D005145 7.0e-80 302.4 400 46.5
FvH4_4g11290 Fragaria vesca HOM05D004311 ORTHO05D005145 1.2e-79 301.6 421 43.0
Glyma.20G245800 Glycine max HOM05D004311 ORTHO05D005145 4.6e-79 299.7 422 44.3
FAN17G0085 Fragaria x ananassa HOM05D004311 ORTHO05D005145 6.0e-79 299.3 465 40.6
COL.COLO4_24387 Corchorus olitorius HOM05D004311 ORTHO05D005145 1.7e-78 297.7 443 43.6
Sc19g0002150 Simmondsia chinensis HOM05D004311 ORTHO05D005145 8.6e-78 295.4 443 43.1
Phvul.007G004100 Phaseolus vulgaris HOM05D004311 ORTHO05D005145 1.1e-77 295.0 453 42.2
Medtr1g116530 Medicago truncatula HOM05D004311 ORTHO05D005145 1.5e-77 294.7 448 44.0
Sabra17G0023900 Salix brachista HOM05D004311 ORTHO05D005145 2.5e-77 293.9 440 41.8
FAN07G0445 Fragaria x ananassa HOM05D004311 ORTHO05D005145 3.3e-77 293.5 491 39.3
vmacro00589 Vaccinium macrocarpon HOM05D004311 ORTHO05D005145 4.3e-77 293.1 329 48.9
Glyma.10G295800 Glycine max HOM05D004311 ORTHO05D005145 9.5e-77 292.0 451 42.4
QL10p045440 Quercus lobata HOM05D004311 ORTHO05D005145 1.6e-76 291.2 682 32.7
Nitab4.5_0000526g0040 Nicotiana tabacum HOM05D004311 ORTHO05D005145 3.6e-76 290.0 276 59.1
Lj6A60T46 Lonicera japonica HOM05D004311 ORTHO05D005145 4.7e-76 289.7 295 54.9
Lj5g0018220 Lotus japonicus HOM05D004311 ORTHO05D005145 8.1e-76 288.9 423 44.2
PGR083G0820 Punica granatum HOM05D004311 ORTHO05D005145 1.1e-75 288.5 450 41.6
MELO3C017696.2 Cucumis melo HOM05D004311 ORTHO05D005145 1.4e-75 288.1 410 45.1
Hund12225 Selenicereus undatus HOM05D004311 ORTHO05D005145 1.4e-75 288.1 445 42.9
Lalb_Chr21g0307601 Lupinus albus HOM05D004311 ORTHO05D005145 5.2e-75 286.2 416 45.7
Sed0012126 Sechium edule HOM05D004311 ORTHO05D005145 1.2e-74 285.0 459 41.6
TPR.G10413 Trifolium pratense HOM05D004311 ORTHO05D005145 1.2e-74 285.0 421 44.2
AUR62002610 Chenopodium quinoa HOM05D004311 ORTHO05D005145 2.6e-74 283.9 439 41.9
DCAR_028443 Daucus carota HOM05D004311 ORTHO05D005145 1.3e-73 281.6 462 41.1
MBI08_g33649_MAGBIO Magnolia biondii HOM05D004311 ORTHO05D005145 1.3e-73 281.6 427 42.9
AUR62030033 Chenopodium quinoa HOM05D004311 ORTHO05D005145 2.2e-73 280.8 429 40.6
EL10Ac3g06308 Beta vulgaris HOM05D004311 ORTHO05D005145 2.9e-73 280.4 430 41.2
CsaV3_4G003570 Cucumis sativus L. HOM05D004311 ORTHO05D005145 8.3e-73 278.9 410 44.4
THA.LOC104821356 Tarenaya hassleriana HOM05D004311 ORTHO05D005145 1.4e-72 278.1 539 37.1
TAR375G1135 Trochodendron aralioides HOM05D004311 ORTHO05D005145 1.4e-72 278.1 436 42.0
RcHm_v2.0_Chr4g0407531 Rosa chinensis HOM05D004311 ORTHO05D005145 5.4e-72 276.2 322 48.8
Nn2g11494 Nelumbo nucifera HOM05D004311 ORTHO05D005145 7.1e-72 275.8 468 40.0
VMungo0720G0448 Vigna mungo HOM05D004311 ORTHO05D005145 1.2e-71 275.0 451 41.5
MD04G1038300 Malus domestica HOM05D004311 ORTHO05D005145 2.1e-71 274.2 285 53.7
Aqoxy5G04052 Aquilegia oxysepala HOM05D004311 ORTHO05D005145 1.0e-70 271.9 421 42.8
Psat6g241440 Pisum sativum HOM05D004311 ORTHO05D005145 1.9e-69 267.7 269 55.0
Actinidia33018 Actinidia chinensis HOM05D004311 ORTHO05D005145 2.5e-69 267.3 339 46.0
HPP92_009171 Vanilla planifolia HOM05D004311 ORTHO05D005145 2.1e-68 264.2 400 41.8
Oeu007717.1 Olea europaea HOM05D004311 ORTHO05D005145 1.8e-67 261.2 271 53.9
ClCG07G015850 Citrullus lanatus HOM05D004311 ORTHO05D005145 5.2e-67 259.6 297 50.2
Nitab4.5_0004962g0030 Nicotiana tabacum HOM05D004311 ORTHO05D005145 1.3e-65 255.0 387 44.2
Dinv22688 Davidia involucrata HOM05D004311 ORTHO05D005145 2.4e-64 250.8 393 42.2
CDE09G0340 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 4.2e-64 250.0 500 34.8
CDE02G0781 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 9.2e-64 248.8 500 35.4
SHI06503 Sapria himalayana HOM05D004311 ORTHO05D005145 5.1e-62 243.0 293 49.1
Sabra17G0023400 Salix brachista HOM05D004311 ORTHO05D005145 4.3e-61 240.0 301 48.2
PSO675G5961 Papaver somniferum HOM05D004311 ORTHO05D005145 1.4e-59 235.0 446 37.0
PSO017G7323 Papaver somniferum HOM05D004311 ORTHO05D005145 2.6e-58 230.7 410 37.3
Os11g0293300 Oryza sativa ssp. japonica HOM05D004311 ORTHO05D005145 7.6e-58 229.2 401 38.7
Aa31LG2G1780 Aethionema arabicum HOM05D004311 ORTHO05D005145 1.3e-57 228.4 441 37.9
Carub.0004s2496 Capsella rubella HOM05D004311 ORTHO05D005145 1.1e-56 225.3 571 32.9
BcaNung03232 Brassica carinata HOM05D004311 ORTHO05D005145 3.2e-56 223.8 279 45.2
Zm00001eb248350 Zea mays HOM05D004311 ORTHO05D005145 1.2e-55 221.9 271 47.2
BcaC02g07234 Brassica carinata HOM05D004311 ORTHO05D005145 1.6e-55 221.5 438 35.4
C04p69770 Brassica napus HOM05D004311 ORTHO05D005145 2.1e-55 221.1 398 36.7
BcaC02g12437 Brassica carinata HOM05D004311 ORTHO05D005145 6.0e-55 219.5 262 45.0
C04p03710 Brassica napus HOM05D004311 ORTHO05D005145 1.3e-54 218.4 399 34.8
Sp4g24640 Schrenkiella parvula HOM05D004311 ORTHO05D005145 1.3e-54 218.4 277 44.8
CARHR055450 Cardamine hirsuta HOM05D004311 ORTHO05D005145 3.0e-54 217.2 411 37.5
A05p03080 Brassica napus HOM05D004311 ORTHO05D005145 3.9e-54 216.9 400 35.0
BraA05t19299Z Brassica rapa HOM05D004311 ORTHO05D005145 3.9e-54 216.9 400 35.8
ATR0743G139 Amborella trichopoda HOM05D004311 ORTHO05D005145 5.1e-54 216.5 401 36.4
BolC4t22005H Brassica oleracea HOM05D004311 ORTHO05D005145 1.5e-53 214.9 261 44.8
AT1G54380 Arabidopsis thaliana HOM05D004311 ORTHO05D005145 4.3e-53 213.4 454 34.6
Prupe.1G189100 Prunus persica HOM05D004311 ORTHO05D005145 9.0e-51 205.7 257 48.2
FAN22G0235 Fragaria x ananassa HOM05D004311 ORTHO05D005820 1.1e-48 198.7 284 43.3
TWI60G0507 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 3.2e-48 197.2 381 36.7
SEGI_09077 Sequoiadendron giganteum HOM05D004311 ORTHO05D005145 4.6e-47 193.4 321 38.6
Cpa.g.sc73.18 Carica papaya HOM05D004311 ORTHO05D005145 1.5e-45 188.3 228 46.1
SMO351G0426 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 3.7e-44 183.7 270 40.4
SMO273G0052 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 1.8e-43 181.4 264 39.8
Lalb_Chr02g0144311 Lupinus albus HOM05D004311 ORTHO05D005145 5.3e-43 179.9 254 44.9
Pp3c18_5230 Physcomitrium patens HOM05D004311 ORTHO05D005145 2.9e-41 174.1 351 33.3
CBR_g48670 Chara braunii HOM05D004311 ORTHO05D005145 5.1e-38 163.3 368 32.9
SMO174G0256 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 4.8e-36 156.8 268 37.7
AagrBONN_evm.TU.Sc2ySwM_228.1282 Anthoceros agrestis HOM05D004311 ORTHO05D005145 1.1e-32 145.6 412 28.9
BcaB06g29252 Brassica carinata HOM05D004311 ORTHO05D005145 2.3e-30 137.9 270 34.8
BcaNung05216 Brassica carinata HOM05D004311 ORTHO05D005145 2.3e-30 137.9 270 34.8
Prupe.1G188800 Prunus persica HOM05D004311 ORTHO05D005145 3.0e-30 137.5 261 36.4
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 1.5e-29 135.2 133 56.4
Thhalv10017985m.g Eutrema salsugineum HOM05D004311 ORTHO05D005145 2.5e-29 134.4 196 40.8
SGA_v2.0_scaffold290G47298 Striga asiatica HOM05D002786 ORTHO05D003493 2.2e-28 131.3 78 84.6
Nitab4.5_0001049g0080 Nicotiana tabacum HOM05D004311 ORTHO05D005145 1.5e-26 125.2 180 45.0
Duzib151G0942 Durio zibethinus HOM05D004311 ORTHO05D005145 3.4e-26 124.0 300 34.0
TWI60G1520 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 3.8e-25 120.6 102 58.8
Mapoly0064s0042 Marchantia polymorpha HOM05D004311 ORTHO05D005145 1.4e-22 112.1 115 52.2
MCO03G002 Micromonas commoda HOM05D004311 ORTHO05D005145 2.6e-18 97.8 274 29.2
BcaNung00544 Brassica carinata HOM05D004311 ORTHO05D005145 2.6e-13 81.3 96 44.8
vmacro00590 Vaccinium macrocarpon HOM05D004311 ORTHO05D005145 3.1e-11 74.3 113 41.6
Oeu050349.1 Olea europaea HOM05D004311 ORTHO05D005145 7.0e-11 73.2 90 44.4
Lj6A60T47 Lonicera japonica HOM05D004311 ORTHO05D005145 9.1e-11 72.8 119 41.2
CARHR137590 Cardamine hirsuta HOM05D004311 ORTHO05D005145 2.6e-10 71.2 48 70.8
CSS0021437 Camellia sinensis var. sinensis HOM05D004311 ORTHO05D005145 1.0e-09 69.3 105 43.8
MSTRG.21993 Avicennia marina HOM05D004311 ORTHO05D005145 2.2e-09 68.2 94 48.9
PGSC0003DMG400021611 Solanum tuberosum HOM05D004311 ORTHO05D005145 3.2e-08 64.3 105 41.9
Hma1.2p1_0429F.1_g151120 Hydrangea macrophylla HOM05D004311 ORTHO05D005145 9.4e-08 62.8 99 39.4
TAR374G0043 Trochodendron aralioides HOM05D004311 ORTHO05D005145 6.1e-07 60.1 62 46.8
Cre09.g405650 Chlamydomonas reinhardtii HOM05D004311 ORTHO05D005145 8.0e-07 59.7 61 47.5
CANSAT78G0609 Cannabis sativa HOM05D004311 ORTHO05D005145 1.8e-06 58.5 96 38.5
CANSAT01G2758 Cannabis sativa HOM05D004311 ORTHO05D005145 2.3e-06 58.2 96 38.5


User provided reference genes

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