Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold12G06084 Striga asiatica HOM05D004357 ORTHO05D005064 1.6e-58 229.6 149 100.0
PGSC0003DMG400007032 Solanum tuberosum HOM05D004357 ORTHO05D005064 7.6e-24 114.4 140 61.4
Nitab4.5_0012195g0010 Nicotiana tabacum HOM05D004357 ORTHO05D005064 1.9e-22 109.8 109 68.8
CAN.G112.17 Capsicum annuum HOM05D004357 ORTHO05D005064 3.2e-22 109.0 113 69.9
Nitab4.5_0004983g0010 Nicotiana tabacum HOM05D004357 ORTHO05D005064 1.2e-21 107.1 151 54.3
SalBow1G5576 Salvia bowleyana HOM05D004357 ORTHO05D005064 1.6e-21 106.7 149 55.7
Solyc05g050730.1 Solanum lycopersicum HOM05D004357 ORTHO05D005064 1.6e-21 106.7 106 70.8
PGSC0003DMG402027015 Solanum tuberosum HOM05D004357 ORTHO05D005064 2.1e-21 106.3 103 72.8
Lsat_1_v5_gn_7_114381 Lactuca sativa HOM05D004357 ORTHO05D005064 1.3e-20 103.6 152 53.3
Solyc06g073220.1 Solanum lycopersicum HOM05D004357 ORTHO05D005064 2.3e-20 102.8 153 54.2
Sopen05g029140 Solanum pennellii HOM05D004357 ORTHO05D005064 3.0e-20 102.4 160 56.2
HanXRQChr13g0408531 Helianthus annuus HOM05D004357 ORTHO05D005064 5.1e-20 101.7 109 65.1
Nitab4.5_0002598g0090 Nicotiana tabacum HOM05D004357 ORTHO05D005064 1.1e-19 100.5 150 54.0
Oeu039200.1 Olea europaea HOM05D004357 ORTHO05D005064 1.5e-19 100.1 105 65.7
Oeu028003.1 Olea europaea HOM05D004357 ORTHO05D005064 2.5e-19 99.4 104 68.3
HanXRQChr17g0546371 Helianthus annuus HOM05D004357 ORTHO05D005064 1.6e-18 96.7 153 54.2
Lsat_1_v5_gn_7_114360 Lactuca sativa HOM05D004357 ORTHO05D005064 1.1e-17 94.0 149 51.0
Sc07g0002830 Simmondsia chinensis HOM05D004357 ORTHO05D005064 3.1e-17 92.4 155 53.5
Lsat_1_v5_gn_3_15001 Lactuca sativa HOM05D004357 ORTHO05D005064 5.3e-17 91.7 149 51.7
Lsat_1_v5_gn_2_77680 Lactuca sativa HOM05D004357 ORTHO05D005064 1.5e-16 90.1 152 52.0
Duzib213G0508 Durio zibethinus HOM05D004357 ORTHO05D005064 2.0e-16 89.7 110 41.8
Migut.K00212 Erythranthe guttata HOM05D004357 ORTHO05D005064 3.4e-16 89.0 108 50.0
Dinv40782 Davidia involucrata HOM05D001348 ORTHO05D008393 4.5e-16 88.6 128 41.4
Lj8C171T1 Lonicera japonica HOM05D004357 ORTHO05D005064 9.9e-16 87.4 69 59.4
Sopen06g029590 Solanum pennellii HOM05D007023 ORTHO05D008684 2.2e-15 86.3 113 43.4
HanXRQChr11g0334081 Helianthus annuus HOM05D004357 ORTHO05D005064 3.8e-15 85.5 108 62.0
Lsat_1_v5_gn_9_92180 Lactuca sativa HOM05D004357 ORTHO05D005064 3.8e-15 85.5 110 60.9
FvH4_3g23190 Fragaria vesca HOM05D004357 ORTHO05D005064 4.9e-15 85.1 159 49.7
FAN11G2993 Fragaria x ananassa HOM05D004357 ORTHO05D005064 4.9e-15 85.1 159 49.7
FAN21G0700 Fragaria x ananassa HOM05D004357 ORTHO05D005064 4.9e-15 85.1 159 49.7
FAN25G0038 Fragaria x ananassa HOM05D004357 ORTHO05D005064 4.9e-15 85.1 159 49.7
FAN25G2170 Fragaria x ananassa HOM05D004357 ORTHO05D005064 6.4e-15 84.7 159 49.7
RcHm_v2.0_Chr5g0040831 Rosa chinensis HOM05D004357 ORTHO05D005064 6.4e-15 84.7 159 49.7
ECA236G2715 Erigeron canadensis HOM05D004357 ORTHO05D005064 8.4e-15 84.3 108 62.0
FAN16G2316 Fragaria x ananassa HOM05D004357 ORTHO05D005064 8.4e-15 84.3 159 49.7
Glyma.18G092400 Glycine max HOM05D004357 ORTHO05D005064 8.4e-15 84.3 121 45.5
CiPaw.12G131900 Carya illinoinensis HOM05D004357 ORTHO05D005064 1.1e-14 84.0 110 61.8
Manes.15G068600 Manihot esculenta HOM05D004357 ORTHO05D005064 1.4e-14 83.6 129 43.4
Phvul.006G047200 Phaseolus vulgaris HOM05D004357 ORTHO05D005064 1.4e-14 83.6 125 43.2
Ciclev10010614m.g Citrus clementina HOM05D004357 ORTHO05D005064 1.9e-14 83.2 108 41.7
DCAR_022585 Daucus carota HOM05D004357 ORTHO05D005064 1.9e-14 83.2 101 63.4
HanXRQChr03g0076711 Helianthus annuus HOM05D004357 ORTHO05D005064 1.9e-14 83.2 109 60.6
QL08p009100 Quercus lobata HOM05D004357 ORTHO05D005064 2.4e-14 82.8 107 63.6
ECA236G1539 Erigeron canadensis HOM05D004357 ORTHO05D005064 3.2e-14 82.4 108 61.1
Gorai.002G091500 Gossypium raimondii HOM05D004357 ORTHO05D005064 4.2e-14 82.0 103 42.7
Nitab4.5_0011467g0070 Nicotiana tabacum HOM05D004357 ORTHO05D005064 4.2e-14 82.0 144 50.0
VMungo0540G0503 Vigna mungo HOM05D004357 ORTHO05D005064 5.4e-14 81.6 126 43.7
Cc05_g14030 Coffea canephora HOM05D004357 ORTHO05D005064 7.1e-14 81.3 116 44.8
Gohir.D01G069200 Gossypium hirsutum HOM05D004357 ORTHO05D005064 7.1e-14 81.3 111 41.4
Sc16g0005860 Simmondsia chinensis HOM05D004357 ORTHO05D005064 1.2e-13 80.5 112 59.8
Gohir.A01G082600 Gossypium hirsutum HOM05D004357 ORTHO05D005064 1.6e-13 80.1 68 51.5
Manes.03G133800 Manihot esculenta HOM05D004357 ORTHO05D005064 1.6e-13 80.1 68 57.4
PSO135G0247 Papaver somniferum HOM05D004357 ORTHO05D005064 1.6e-13 80.1 105 62.9
A03p14230 Brassica napus HOM05D004357 ORTHO05D005064 2.1e-13 79.7 135 51.1
Lalb_Chr20g0115381 Lupinus albus HOM05D004357 ORTHO05D005064 2.1e-13 79.7 124 41.9
MD11G1213000 Malus domestica HOM05D004357 ORTHO05D005064 2.7e-13 79.3 111 58.6
Nitab4.5_0011467g0030 Nicotiana tabacum HOM05D004357 ORTHO05D005064 3.5e-13 79.0 157 34.4
TWI39G1080 Tripterygium wilfordii HOM05D004357 ORTHO05D005064 4.6e-13 78.6 119 38.7
Glyma.08G320000 Glycine max HOM05D004357 ORTHO05D005064 6.0e-13 78.2 126 39.7
THA.LOC104798766 Tarenaya hassleriana HOM05D004357 ORTHO05D005064 6.0e-13 78.2 117 36.8
PSO541G1695 Papaver somniferum HOM05D004357 ORTHO05D005064 7.9e-13 77.8 111 60.4
AT4G26880 Arabidopsis thaliana HOM05D004357 ORTHO05D005064 1.0e-12 77.4 113 40.7
A10p12380 Brassica napus HOM05D004357 ORTHO05D005064 1.0e-12 77.4 121 41.3
BraA10t43333Z Brassica rapa HOM05D004357 ORTHO05D005064 1.0e-12 77.4 121 41.3
CANSAT11G1041 Cannabis sativa HOM05D004357 ORTHO05D005064 1.3e-12 77.0 122 35.2
DCAR_016717 Daucus carota HOM05D004357 ORTHO05D005064 1.3e-12 77.0 101 61.4
BcaC01g06348 Brassica carinata HOM05D004357 ORTHO05D005064 1.8e-12 76.6 167 44.3
MD03G1197000 Malus domestica HOM05D004357 ORTHO05D005064 1.8e-12 76.6 72 48.6
PSO541G4299 Papaver somniferum HOM05D004357 ORTHO05D005064 1.8e-12 76.6 105 63.8
Sabra16G0234300 Salix brachista HOM05D004357 ORTHO05D005064 1.8e-12 76.6 69 55.1
Sabra16G0234600 Salix brachista HOM05D004357 ORTHO05D005064 1.8e-12 76.6 69 55.1
AT1G50720 Arabidopsis thaliana HOM05D004357 ORTHO05D005064 2.3e-12 76.3 111 41.4
Duzib170G0654 Durio zibethinus HOM05D004357 ORTHO05D005064 2.3e-12 76.3 115 41.7
Potri.001G356600 Populus trichocarpa HOM05D004357 ORTHO05D005064 2.3e-12 76.3 128 39.1
AUR62015821 Chenopodium quinoa HOM05D004357 ORTHO05D005064 3.9e-12 75.5 113 57.5
CARHR040820 Cardamine hirsuta HOM05D004357 ORTHO05D005064 6.7e-12 74.7 118 38.1
AUR62015823 Chenopodium quinoa HOM05D004357 ORTHO05D005064 8.7e-12 74.3 160 46.2
Lj6g0017870 Lotus japonicus HOM05D004357 ORTHO05D005064 8.7e-12 74.3 132 38.6
Atru.chr2.3491 Acer truncatum HOM05D004357 ORTHO05D005064 1.1e-11 73.9 69 50.7
Aa31LG5G12090 Aethionema arabicum HOM05D002991 ORTHO05D003480 1.1e-11 73.9 112 44.6
Ah.06g182580 Amaranthus hybridus HOM05D004357 ORTHO05D005064 1.1e-11 73.9 160 48.1
AL8G30610 Arabidopsis lyrata HOM05D004357 ORTHO05D005064 1.1e-11 73.9 119 39.5
CARHR234490 Cardamine hirsuta HOM05D004357 ORTHO05D005064 1.1e-11 73.9 115 41.7
Cpa.g.sc12.272 Carica papaya HOM05D004357 ORTHO05D005064 1.1e-11 73.9 65 49.2
Sp7g24830 Schrenkiella parvula HOM05D004357 ORTHO05D005064 1.1e-11 73.9 68 51.5
TAR627G1104 Trochodendron aralioides HOM05D004357 ORTHO05D005064 1.1e-11 73.9 102 62.7
AT5G55110 Arabidopsis thaliana HOM05D004357 ORTHO05D005064 1.5e-11 73.6 59 55.9
C09p45880 Brassica napus HOM05D004357 ORTHO05D005064 1.5e-11 73.6 121 38.8
BcaNung03559 Brassica carinata HOM05D004357 ORTHO05D005064 1.9e-11 73.2 111 43.2
Carub.0001s3975 Capsella rubella HOM05D004357 ORTHO05D005064 1.9e-11 73.2 66 45.5
BcaC04g20269 Brassica carinata HOM05D004357 ORTHO05D005064 2.5e-11 72.8 71 52.1
BolC9t57436H Brassica oleracea HOM05D004357 ORTHO05D005064 2.5e-11 72.8 71 52.1
Carub.0007s1397 Capsella rubella HOM05D004357 ORTHO05D005064 2.5e-11 72.8 112 40.2
CARHR268450 Cardamine hirsuta HOM05D004357 ORTHO05D005064 2.5e-11 72.8 57 56.1
C01p23050 Brassica napus HOM05D004357 ORTHO05D005064 3.3e-11 72.4 67 50.7
BolC1t02239H Brassica oleracea HOM05D004357 ORTHO05D005064 3.3e-11 72.4 67 50.7
BraA02t06052Z Brassica rapa HOM05D002089 ORTHO05D002848 3.3e-11 72.4 57 57.9
Potri.011G080800 Populus trichocarpa HOM05D004357 ORTHO05D005064 3.3e-11 72.4 126 37.3
Aa31LG3G11030 Aethionema arabicum HOM05D004357 ORTHO05D005064 4.3e-11 72.0 76 48.7
Carub.0008s1540 Capsella rubella HOM05D004357 ORTHO05D005064 4.3e-11 72.0 57 56.1
AUR62020398 Chenopodium quinoa HOM05D004357 ORTHO05D005064 4.3e-11 72.0 158 36.1
COL.COLO4_09694 Corchorus olitorius HOM05D004357 ORTHO05D005064 4.3e-11 72.0 73 49.3
Eucgr.F00736 Eucalyptus grandis HOM05D004357 ORTHO05D005064 4.3e-11 72.0 117 37.6
Sp1g37560 Schrenkiella parvula HOM05D004357 ORTHO05D005064 4.3e-11 72.0 65 50.8
A02p09880 Brassica napus HOM05D002089 ORTHO05D002848 7.4e-11 71.2 57 56.1
Thhalv10027097m.g Eutrema salsugineum HOM05D004357 ORTHO05D005064 9.6e-11 70.9 107 39.3
BcaC03g14266 Brassica carinata HOM05D004357 ORTHO05D005064 1.3e-10 70.5 57 56.1
C02p16430 Brassica napus HOM05D002089 ORTHO05D005064 1.3e-10 70.5 57 56.1
BolC2t07743H Brassica oleracea HOM05D002089 ORTHO05D005064 1.3e-10 70.5 57 56.1
Lj6g0011908 Lotus japonicus HOM05D004357 ORTHO05D005064 1.3e-10 70.5 129 36.4
BolC3t14083H Brassica oleracea HOM05D004357 ORTHO05D005064 1.6e-10 70.1 167 42.5
Medtr3g053240 Medicago truncatula HOM05D004357 ORTHO05D005064 1.6e-10 70.1 117 38.5
BcaB05g22181 Brassica carinata HOM05D004357 ORTHO05D005064 2.8e-10 69.3 72 50.0
BcaC08g43251 Brassica carinata HOM05D004357 ORTHO05D005064 2.8e-10 69.3 67 46.3
A06p02900 Brassica napus HOM05D004357 ORTHO05D005064 2.8e-10 69.3 67 46.3
C06p05970 Brassica napus HOM05D004357 ORTHO05D005064 2.8e-10 69.3 67 46.3
BolC6t35710H Brassica oleracea HOM05D004357 ORTHO05D005064 2.8e-10 69.3 67 46.3
Actinidia35360 Actinidia chinensis HOM05D004357 ORTHO05D005064 3.7e-10 68.9 120 34.2
AUR62020397 Chenopodium quinoa HOM05D004357 ORTHO05D005064 3.7e-10 68.9 160 44.4
Thhalv10012189m.g Eutrema salsugineum HOM05D004357 ORTHO05D005064 3.7e-10 68.9 116 34.5
Thhalv10014856m.g Eutrema salsugineum HOM05D004357 ORTHO05D005064 3.7e-10 68.9 57 54.4
THA.LOC104811623 Tarenaya hassleriana HOM05D004357 ORTHO05D005064 3.7e-10 68.9 113 38.1
Thecc.07G032000 Theobroma cacao HOM05D004357 ORTHO05D005064 3.7e-10 68.9 118 35.6
BraA06t23496Z Brassica rapa HOM05D004357 ORTHO05D005064 4.8e-10 68.6 67 44.8
BcaB07g33511 Brassica carinata HOM05D004357 ORTHO05D005064 8.1e-10 67.8 114 33.3
BcaB08g35875 Brassica carinata HOM05D004357 ORTHO05D005064 1.1e-09 67.4 113 37.2
A01p18090 Brassica napus HOM05D004357 ORTHO05D005064 1.1e-09 67.4 56 50.0
Sp6g17040 Schrenkiella parvula HOM05D004357 ORTHO05D005064 1.1e-09 67.4 57 52.6
BraA01t01764Z Brassica rapa HOM05D004357 ORTHO05D005064 1.8e-09 66.6 113 35.4
CsaV3_3G004660 Cucumis sativus L. HOM05D004357 ORTHO05D005064 1.8e-09 66.6 121 34.7
ClCG10G005000 Citrullus lanatus HOM05D004357 ORTHO05D005064 2.4e-09 66.2 65 43.1
MELO3C014164.2 Cucumis melo HOM05D004357 ORTHO05D005064 1.2e-08 63.9 108 50.9
Psat5g173760 Pisum sativum HOM05D004357 ORTHO05D005064 1.2e-08 63.9 124 33.1
arahy.Tifrunner.gnm1.ann1.HIXG1Y Arachis hypogaea HOM05D002014 ORTHO05D001958 1.5e-08 63.5 113 37.2
A03p14260 Brassica napus HOM05D004357 ORTHO05D005064 1.5e-08 63.5 71 45.1
BraA03t10723Z Brassica rapa HOM05D004357 ORTHO05D005064 1.5e-08 63.5 71 45.1
PGR083G1129 Punica granatum HOM05D004357 ORTHO05D005064 1.5e-08 63.5 51 52.9
Medtr4g044463 Medicago truncatula HOM05D004357 ORTHO05D005064 2.0e-08 63.2 121 35.5
THA.LOC104817674 Tarenaya hassleriana HOM05D004357 ORTHO05D005064 4.5e-08 62.0 108 38.0
TPR.G14428 Trifolium pratense HOM05D004357 ORTHO05D005064 4.5e-08 62.0 121 33.9
arahy.Tifrunner.gnm1.ann1.RRTI1V Arachis hypogaea HOM05D002014 ORTHO05D001958 5.8e-08 61.6 113 36.3
Ca_03254_v3 Cicer arietinum L. HOM05D004357 ORTHO05D005064 5.8e-08 61.6 120 34.2
Aqoxy1G03059 Aquilegia oxysepala HOM05D004357 ORTHO05D005064 9.9e-08 60.8 102 56.9
arahy.Tifrunner.gnm1.ann1.J355LQ Arachis hypogaea HOM05D002014 ORTHO05D001958 9.9e-08 60.8 109 33.0
Sed0014123 Sechium edule HOM05D004357 ORTHO05D005064 9.9e-08 60.8 161 42.2
arahy.Tifrunner.gnm1.ann1.DPYD9S Arachis hypogaea HOM05D002014 ORTHO05D001958 1.3e-07 60.5 109 36.7
arahy.Tifrunner.gnm1.ann1.DG0M13 Arachis hypogaea HOM05D002014 ORTHO05D001958 1.7e-07 60.1 105 37.1
BraA03t10721Z Brassica rapa HOM05D000020 ORTHO05D002694 1.7e-07 60.1 96 35.4
Migut.J01605 Erythranthe guttata HOM05D004357 ORTHO05D005064 1.7e-07 60.1 132 50.8
Peaxi162Scf00126g00115 Petunia axillaris HOM05D004357 ORTHO05D005064 2.2e-07 59.7 106 34.0
Peaxi162Scf01626g00015 Petunia axillaris HOM05D004357 ORTHO05D005064 2.9e-07 59.3 48 54.2
TPR.G14421 Trifolium pratense HOM05D004357 ORTHO05D005064 2.9e-07 59.3 121 35.5
Nn1g03453 Nelumbo nucifera HOM05D004357 ORTHO05D005064 6.4e-07 58.2 182 40.7
BcaB01g04366 Brassica carinata HOM05D004357 ORTHO05D005064 1.1e-06 57.4 108 53.7
Glyma.15G110600 Glycine max HOM05D002014 ORTHO05D001958 2.4e-06 56.2 106 35.8
Medtr2g100600 Medicago truncatula HOM05D002014 ORTHO05D001958 3.2e-06 55.8 108 36.1
Prupe.4G218300 Prunus persica HOM05D004357 ORTHO05D005064 7.1e-06 54.7 127 29.1
Gorai.009G441300 Gossypium raimondii HOM05D004357 ORTHO05D005064 9.3e-06 54.3 94 38.3


User provided reference genes

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