Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold12G06067 Striga asiatica HOM05D002433 ORTHO05D019117 1.4e-60 236.1 117 100.0
SGA_v2.0_scaffold59G20627 Striga asiatica HOM05D002433 ORTHO05D019117 2.4e-41 172.2 93 93.5
SGA_v2.0_scaffold59G20745 Striga asiatica HOM05D002433 ORTHO05D019117 6.3e-34 147.5 92 85.9
SGA_v2.0_scaffold60G20923 Striga asiatica HOM05D002433 ORTHO05D019117 1.0e-31 140.2 76 90.8
SGA_v2.0_scaffold52G18991 Striga asiatica HOM05D002433 ORTHO05D019117 2.1e-29 132.5 73 90.4
SGA_v2.0_scaffold122G33349 Striga asiatica HOM05D002433 ORTHO05D003234 3.2e-17 92.0 92 62.0
Cc04_g01530 Coffea canephora HOM05D002433 ORTHO05D003234 5.1e-15 84.7 63 65.1
MSTRG.10967 Avicennia marina HOM05D002433 ORTHO05D003234 6.6e-15 84.3 65 69.2
SGA_v2.0_scaffold51G18654 Striga asiatica HOM05D002433 ORTHO05D019117 1.9e-14 82.8 49 79.6
SGA_v2.0_scaffold71G23836 Striga asiatica HOM05D002433 ORTHO05D003234 2.5e-14 82.4 94 59.6
MSTRG.22558 Avicennia marina HOM05D002433 ORTHO05D003234 3.3e-14 82.0 65 66.2
Oeu058714.2 Olea europaea HOM05D002433 ORTHO05D003234 7.3e-14 80.9 84 57.1
Dinv30368 Davidia involucrata HOM05D002433 ORTHO05D003234 1.2e-13 80.1 83 57.8
Oeu007570.1 Olea europaea HOM05D002433 ORTHO05D003234 1.2e-13 80.1 89 55.1
Dinv37886 Davidia involucrata HOM05D002433 ORTHO05D003234 1.6e-13 79.7 80 62.5
Nn8g38753 Nelumbo nucifera HOM05D002433 ORTHO05D003234 6.2e-13 77.8 51 78.4
SGA_v2.0_scaffold62G21420 Striga asiatica HOM05D000133 ORTHO05D006262 6.2e-13 77.8 59 72.9
Nn6g35561 Nelumbo nucifera HOM05D002433 ORTHO05D003234 1.4e-12 76.6 81 58.0
Hma1.2p1_0169F.1_g074780 Hydrangea macrophylla HOM05D002433 ORTHO05D003234 1.8e-12 76.3 109 48.6
VMungo1080G1021 Vigna mungo HOM05D002433 ORTHO05D003234 1.8e-12 76.3 92 55.4
Actinidia32170 Actinidia chinensis HOM05D002433 ORTHO05D003234 3.1e-12 75.5 98 55.1
Nitab4.5_0002795g0060 Nicotiana tabacum HOM05D002433 ORTHO05D003234 4.0e-12 75.1 64 59.4
Nitab4.5_0011681g0010 Nicotiana tabacum HOM05D002433 ORTHO05D003234 4.0e-12 75.1 64 59.4
CSS0008835 Camellia sinensis var. sinensis HOM05D002433 ORTHO05D003234 8.9e-12 73.9 92 54.3
Migut.I01056 Erythranthe guttata HOM05D002433 ORTHO05D003234 8.9e-12 73.9 82 57.3
Actinidia21783 Actinidia chinensis HOM05D002433 ORTHO05D016425 2.0e-11 72.8 94 55.3
EL10Ac7g17640 Beta vulgaris HOM05D002433 ORTHO05D003234 2.0e-11 72.8 44 79.5
Ca_01229_v3 Cicer arietinum L. HOM05D002433 ORTHO05D003234 2.6e-11 72.4 48 79.2
TAR623G0996 Trochodendron aralioides HOM05D002433 ORTHO05D003234 2.6e-11 72.4 68 58.8
TAR636G1280 Trochodendron aralioides HOM05D002433 ORTHO05D003234 2.6e-11 72.4 68 58.8
ECA246G2497 Erigeron canadensis HOM05D002433 ORTHO05D003234 3.4e-11 72.0 68 58.8
Lalb_Chr14g0372641 Lupinus albus HOM05D002433 ORTHO05D003234 3.4e-11 72.0 50 72.0
TAR624G0265 Trochodendron aralioides HOM05D002433 ORTHO05D003234 3.4e-11 72.0 51 72.5
Aqoxy7G01127 Aquilegia oxysepala HOM05D002433 ORTHO05D003234 4.4e-11 71.6 82 56.1
Phvul.005G156300 Phaseolus vulgaris HOM05D002433 ORTHO05D003234 4.4e-11 71.6 89 53.9
Hma1.2p1_0291F.1_g115320 Hydrangea macrophylla HOM05D002433 ORTHO05D003234 5.8e-11 71.2 91 53.8
Peaxi162Scf00038g01712 Petunia axillaris HOM05D002433 ORTHO05D003234 5.8e-11 71.2 90 51.1
Sed0018623 Sechium edule HOM05D002433 ORTHO05D003234 5.8e-11 71.2 49 73.5
Solyc03g121910.1 Solanum lycopersicum HOM05D002433 ORTHO05D003234 5.8e-11 71.2 80 52.5
Sopen03g040730 Solanum pennellii HOM05D002433 ORTHO05D003234 5.8e-11 71.2 80 52.5
Cpa.g.sc25.90 Carica papaya HOM05D002433 ORTHO05D003234 7.5e-11 70.9 49 75.5
Lsat_1_v5_gn_5_21680 Lactuca sativa HOM05D002433 ORTHO05D003234 7.5e-11 70.9 48 72.9
PGSC0003DMG400002486 Solanum tuberosum HOM05D002433 ORTHO05D003234 7.5e-11 70.9 80 52.5
ATR0051G050 Amborella trichopoda HOM05D002433 ORTHO05D003234 1.3e-10 70.1 89 49.4
CSS0024216 Camellia sinensis var. sinensis HOM05D002433 ORTHO05D003234 1.3e-10 70.1 121 41.3
TPR.G6603 Trifolium pratense HOM05D002433 ORTHO05D003234 1.3e-10 70.1 48 75.0
CAN.G825.21 Capsicum annuum HOM05D002433 ORTHO05D003234 2.2e-10 69.3 47 70.2
unitig_62.g23761 Utricularia gibba HOM05D002433 ORTHO05D003234 2.2e-10 69.3 86 52.3
PGR102G1947 Punica granatum HOM05D002433 ORTHO05D003234 2.9e-10 68.9 52 71.2
CDE05G1376 Ceratophyllum demersum HOM05D002433 ORTHO05D003234 4.9e-10 68.2 107 46.7
DCAR_007633 Daucus carota HOM05D002433 ORTHO05D003234 4.9e-10 68.2 92 51.1
Glyma.13G347100 Glycine max HOM05D002433 ORTHO05D003234 4.9e-10 68.2 92 53.3
MD15G1212700 Malus domestica HOM05D002433 ORTHO05D003234 4.9e-10 68.2 107 46.7
Medtr2g099510 Medicago truncatula HOM05D002433 ORTHO05D003234 6.4e-10 67.8 96 52.1
Solyc06g062840.4 Solanum lycopersicum HOM05D002433 ORTHO05D003234 6.4e-10 67.8 86 46.5
Oeu047968.1 Olea europaea HOM05D002433 ORTHO05D019117 8.3e-10 67.4 92 46.7
SGA_v2.0_scaffold24G10402 Striga asiatica HOM05D002433 ORTHO05D403451 8.3e-10 67.4 51 72.5
Manes.16G098600 Manihot esculenta HOM05D002433 ORTHO05D003234 1.1e-09 67.0 81 56.8
arahy.Tifrunner.gnm1.ann1.TTHG3F Arachis hypogaea HOM05D002433 ORTHO05D003234 1.4e-09 66.6 59 64.4
CDE05G0453 Ceratophyllum demersum HOM05D002433 ORTHO05D003234 1.4e-09 66.6 110 44.5
Lj9P521T29 Lonicera japonica HOM05D002433 ORTHO05D003234 1.4e-09 66.6 77 54.5
PGSC0003DMG400004886 Solanum tuberosum HOM05D002433 ORTHO05D003234 1.4e-09 66.6 83 48.2
Gohir.A06G074501 Gossypium hirsutum HOM05D002433 ORTHO05D003234 1.9e-09 66.2 90 48.9
CsaV3_1G040720 Cucumis sativus L. HOM05D002433 ORTHO05D003234 2.4e-09 65.9 74 52.7
Sc02g0004340 Simmondsia chinensis HOM05D002433 ORTHO05D003234 2.4e-09 65.9 48 66.7
CAN.G862.21 Capsicum annuum HOM05D002433 ORTHO05D003234 4.1e-09 65.1 78 50.0
Peaxi162Scf00207g01429 Petunia axillaris HOM05D002433 ORTHO05D003234 4.1e-09 65.1 90 46.7
Glyma.15G027000 Glycine max HOM05D002433 ORTHO05D003234 7.1e-09 64.3 92 51.1
Rhsim05G0013800 Rhododendron simsii HOM05D002433 ORTHO05D003234 7.1e-09 64.3 77 48.1
COL.COLO4_18149 Corchorus olitorius HOM05D002433 ORTHO05D003234 9.2e-09 63.9 77 53.2
Sopen06g022300 Solanum pennellii HOM05D002433 ORTHO05D003234 9.2e-09 63.9 90 43.3
unitig_52.g17098 Utricularia gibba HOM05D002433 ORTHO05D003234 9.2e-09 63.9 74 51.4
BcaC04g22857 Brassica carinata HOM05D002433 ORTHO05D003234 1.2e-08 63.5 92 50.0
BolC9t54359H Brassica oleracea HOM05D002433 ORTHO05D003234 1.2e-08 63.5 92 50.0
CiPaw.01G221400 Carya illinoinensis HOM05D002433 ORTHO05D003234 1.2e-08 63.5 92 52.2
Gorai.010G085500 Gossypium raimondii HOM05D002433 ORTHO05D003234 1.2e-08 63.5 79 57.0
Rhsim08G0236700 Rhododendron simsii HOM05D002433 ORTHO05D003234 1.2e-08 63.5 78 53.8
arahy.Tifrunner.gnm1.ann1.ZW77VX Arachis hypogaea HOM05D002433 ORTHO05D003234 1.6e-08 63.2 81 53.1
Gohir.D06G073200 Gossypium hirsutum HOM05D002433 ORTHO05D003234 1.6e-08 63.2 79 55.7
Sp5g27850 Schrenkiella parvula HOM05D002433 ORTHO05D003234 1.6e-08 63.2 63 58.7
Aa31LG4G3150 Aethionema arabicum HOM05D002433 ORTHO05D003234 2.1e-08 62.8 86 50.0
CiPaw.02G137400 Carya illinoinensis HOM05D002433 ORTHO05D003234 2.1e-08 62.8 50 72.0
QL02p061713 Quercus lobata HOM05D002433 ORTHO05D003234 2.1e-08 62.8 50 66.0
Thhalv10018411m.g Eutrema salsugineum HOM05D002433 ORTHO05D003234 2.7e-08 62.4 80 55.0
Nitab4.5_0007560g0020 Nicotiana tabacum HOM05D002433 ORTHO05D003234 2.7e-08 62.4 90 47.8
vmacro22220 Vaccinium macrocarpon HOM05D002433 ORTHO05D003234 2.7e-08 62.4 50 66.0
Lalb_Chr12g0199971 Lupinus albus HOM05D002433 ORTHO05D003234 3.5e-08 62.0 82 46.3
HanXRQChr12g0359681 Helianthus annuus HOM05D002433 ORTHO05D003234 4.6e-08 61.6 44 70.5
CARHR065720 Cardamine hirsuta HOM05D002433 ORTHO05D003234 6.0e-08 61.2 89 47.2
Gohir.A05G032400 Gossypium hirsutum HOM05D002433 ORTHO05D003234 7.8e-08 60.8 49 69.4
Gohir.D05G033800 Gossypium hirsutum HOM05D002433 ORTHO05D003234 7.8e-08 60.8 49 69.4
Gorai.009G034200 Gossypium raimondii HOM05D002433 ORTHO05D003234 7.8e-08 60.8 49 69.4
Cfa003550 Carpinus fangiana HOM05D002433 ORTHO05D003234 1.0e-07 60.5 101 46.5
FAN18G0462 Fragaria x ananassa HOM05D002433 ORTHO05D003234 1.0e-07 60.5 64 53.1
ClCG03G015330 Citrullus lanatus HOM05D002433 ORTHO05D003234 1.3e-07 60.1 73 49.3
Haze_15998 Corylus avellana HOM05D002433 ORTHO05D003234 1.3e-07 60.1 101 46.5
Dinv42354 Davidia involucrata HOM05D002433 ORTHO05D003234 1.7e-07 59.7 74 50.0
AL2G32500 Arabidopsis lyrata HOM05D002433 ORTHO05D003234 2.3e-07 59.3 87 54.0
Thecc.09G082400 Theobroma cacao HOM05D002433 ORTHO05D003234 2.3e-07 59.3 93 50.5
HanXRQChr02g0031501 Helianthus annuus HOM05D002433 ORTHO05D003234 3.0e-07 58.9 44 68.2
Manes.11G022700 Manihot esculenta HOM05D002433 ORTHO05D003234 3.0e-07 58.9 89 47.2
CARHR237740 Cardamine hirsuta HOM05D002433 ORTHO05D003234 3.9e-07 58.5 46 69.6
MELO3C016527.2 Cucumis melo HOM05D002433 ORTHO05D016425 3.9e-07 58.5 104 44.2
FvH4_1g08110 Fragaria vesca HOM05D002433 ORTHO05D003234 3.9e-07 58.5 69 52.2
PSO782G3829 Papaver somniferum HOM05D002433 ORTHO05D003234 3.9e-07 58.5 44 59.1
TWI32G1360 Tripterygium wilfordii HOM05D002433 ORTHO05D003234 3.9e-07 58.5 93 47.3
Atru.chr5.2876 Acer truncatum HOM05D002433 ORTHO05D003234 5.1e-07 58.2 43 65.1
Ah.15g092780 Amaranthus hybridus HOM05D002433 ORTHO05D003234 5.1e-07 58.2 83 45.8
C09p14550 Brassica napus HOM05D002433 ORTHO05D003234 5.1e-07 58.2 92 48.9
Sed0003791 Sechium edule HOM05D002433 ORTHO05D003234 5.1e-07 58.2 96 42.7
BcaC03g15421 Brassica carinata HOM05D002433 ORTHO05D003234 6.6e-07 57.8 47 63.8
A02p18290 Brassica napus HOM05D002433 ORTHO05D003234 6.6e-07 57.8 47 63.8
C02p30320 Brassica napus HOM05D002433 ORTHO05D003234 6.6e-07 57.8 47 63.8
BraA02t06868Z Brassica rapa HOM05D002433 ORTHO05D003234 6.6e-07 57.8 47 63.8
FAN19G0473 Fragaria x ananassa HOM05D002433 ORTHO05D003234 6.6e-07 57.8 81 53.1
Lj3g0023880 Lotus japonicus HOM05D002433 ORTHO05D003234 6.6e-07 57.8 43 69.8
RcHm_v2.0_Chr2g0094161 Rosa chinensis HOM05D002433 ORTHO05D003234 6.6e-07 57.8 73 54.8
BcaNung06772 Brassica carinata HOM05D002433 ORTHO05D003234 8.6e-07 57.4 42 69.0
A09p12340 Brassica napus HOM05D002433 ORTHO05D003234 8.6e-07 57.4 42 69.0
BraA09t36878Z Brassica rapa HOM05D002433 ORTHO05D003234 8.6e-07 57.4 42 69.0
QL05p009200 Quercus lobata HOM05D002433 ORTHO05D003234 8.6e-07 57.4 52 65.4
Carub.0002s1965 Capsella rubella HOM05D002433 ORTHO05D003234 1.1e-06 57.0 93 48.4
FAN26G1431 Fragaria x ananassa HOM05D002433 ORTHO05D003234 1.5e-06 56.6 81 54.3
Aa31LG2G20700 Aethionema arabicum HOM05D002433 ORTHO05D003234 1.9e-06 56.2 67 55.2
AL7G22410 Arabidopsis lyrata HOM05D002433 ORTHO05D003234 1.9e-06 56.2 42 71.4
Carub.0004s1479 Capsella rubella HOM05D002433 ORTHO05D003234 1.9e-06 56.2 42 71.4
Haze_25955 Corylus avellana HOM05D002433 ORTHO05D003234 1.9e-06 56.2 94 48.9
MELO3C008386.2 Cucumis melo HOM05D002433 ORTHO05D016425 1.9e-06 56.2 81 49.4
THA.LOC104820013 Tarenaya hassleriana HOM05D002433 ORTHO05D003234 1.9e-06 56.2 47 66.0
AT4G29840 Arabidopsis thaliana HOM05D002433 ORTHO05D003234 2.5e-06 55.8 42 71.4
Thhalv10024890m.g Eutrema salsugineum HOM05D002433 ORTHO05D003234 2.5e-06 55.8 46 65.2
MBI18_g29373_MAGBIO Magnolia biondii HOM05D002433 ORTHO05D003234 2.5e-06 55.8 51 58.8
FAN26G2727 Fragaria x ananassa HOM05D002433 ORTHO05D003234 3.3e-06 55.5 81 54.3
Lalb_Chr07g0181011 Lupinus albus HOM05D002433 ORTHO05D003234 3.3e-06 55.5 42 69.0
PSO478G2384 Papaver somniferum HOM05D002433 ORTHO05D003234 3.3e-06 55.5 40 62.5
VMungo1215G0297 Vigna mungo HOM05D002433 ORTHO05D003234 3.3e-06 55.5 90 46.7
Duzib187G0335 Durio zibethinus HOM05D002433 ORTHO05D003234 4.3e-06 55.1 88 48.9
FAN12G0106 Fragaria x ananassa HOM05D002433 ORTHO05D035701 4.3e-06 55.1 57 56.1
AT1G72810 Arabidopsis thaliana HOM05D002433 ORTHO05D003234 5.6e-06 54.7 95 49.5
Duzib168G0291 Durio zibethinus HOM05D002433 ORTHO05D003234 5.6e-06 54.7 91 46.2
BcaB05g24778 Brassica carinata HOM05D002433 ORTHO05D003234 7.3e-06 54.3 81 48.1
BolC2t09082H Brassica oleracea HOM05D002433 ORTHO05D003234 7.3e-06 54.3 80 51.2
Eucgr.C00846 Eucalyptus grandis HOM05D002433 ORTHO05D003234 9.5e-06 53.9 75 46.7
Sp3g32740 Schrenkiella parvula HOM05D002433 ORTHO05D003234 9.5e-06 53.9 68 51.5


User provided reference genes

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