Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold12G06063 Striga asiatica HOM05D001798 ORTHO05D005040 1.7e-64 249.2 127 100.0
SGA_v2.0_scaffold301G47805 Striga asiatica HOM05D000485 ORTHO05D005040 1.4e-50 203.0 127 83.5
MSTRG.19701 Avicennia marina HOM05D001798 ORTHO05D005040 7.9e-38 160.6 123 68.3
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 3.0e-37 158.7 127 67.7
SGA_v2.0_scaffold69G23263 Striga asiatica HOM05D001798 ORTHO05D005040 3.3e-36 155.2 125 67.2
Migut.J01450 Erythranthe guttata HOM05D001798 ORTHO05D005040 3.7e-35 151.8 126 62.7
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 6.9e-34 147.5 130 60.8
Peaxi162Scf00296g00124 Petunia axillaris HOM05D001798 ORTHO05D005040 6.9e-34 147.5 138 59.4
SalBow6G3226 Salvia bowleyana HOM05D001798 ORTHO05D005040 6.9e-34 147.5 122 64.8
SalBow6G3242 Salvia bowleyana HOM05D001798 ORTHO05D005040 6.9e-34 147.5 122 64.8
COL.COLO4_36848 Corchorus olitorius HOM05D001798 ORTHO05D005040 1.5e-33 146.4 118 63.6
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 7.6e-33 144.1 124 60.5
Migut.K00248 Erythranthe guttata HOM05D001798 ORTHO05D005040 1.7e-32 142.9 130 64.6
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 1.7e-32 142.9 117 61.5
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 2.2e-32 142.5 117 59.8
Gorai.004G100700 Gossypium raimondii HOM05D001798 ORTHO05D005040 4.9e-32 141.4 117 59.0
Gohir.A08G085900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 6.4e-32 141.0 117 59.8
Gohir.D08G094900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 8.4e-32 140.6 117 59.0
Hma1.2p1_1646F.1_g295510 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 3.2e-31 138.7 122 60.7
Hma1.2p1_2478F.1_g322950 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 3.2e-31 138.7 122 60.7
CiPaw.07G191500 Carya illinoinensis HOM05D001798 ORTHO05D005040 4.2e-31 138.3 123 58.5
TWI34G0376 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 4.2e-31 138.3 122 61.5
Prupe.1G087800 Prunus persica HOM05D001798 ORTHO05D005040 5.5e-31 137.9 123 61.0
QL02p097578 Quercus lobata HOM05D001798 ORTHO05D005040 7.1e-31 137.5 124 59.7
Sopen11g004390 Solanum pennellii HOM05D001798 ORTHO05D005040 7.1e-31 137.5 132 57.6
Duzib150G1419 Durio zibethinus HOM05D001798 ORTHO05D005040 1.2e-30 136.7 117 58.1
Sabra18G0080900 Salix brachista HOM05D001798 ORTHO05D005040 1.2e-30 136.7 125 56.0
PGSC0003DMG400016261 Solanum tuberosum HOM05D001798 ORTHO05D005040 1.2e-30 136.7 137 58.4
TWI34G1338 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 2.1e-30 136.0 122 61.5
Solyc11g008600.1 Solanum lycopersicum HOM05D001798 ORTHO05D005040 2.7e-30 135.6 133 57.1
Ciclev10009891m.g Citrus clementina HOM05D001798 ORTHO05D005040 6.0e-30 134.4 127 58.3
Cpa.g.sc95.60 Carica papaya HOM05D001798 ORTHO05D005040 1.0e-29 133.7 126 58.7
Nn2g12701 Nelumbo nucifera HOM05D001798 ORTHO05D005040 3.9e-29 131.7 127 52.8
Haze_19626 Corylus avellana HOM05D001798 ORTHO05D005040 5.1e-29 131.3 122 59.8
TAR383G0769 Trochodendron aralioides HOM05D001798 ORTHO05D005040 1.1e-28 130.2 116 60.3
Cfa016621 Carpinus fangiana HOM05D001798 ORTHO05D005040 1.5e-28 129.8 124 59.7
MD12G1161200 Malus domestica HOM05D001798 ORTHO05D005040 1.5e-28 129.8 119 52.9
QL02p097572 Quercus lobata HOM05D001798 ORTHO05D005040 2.5e-28 129.0 124 59.7
MD13G1257600 Malus domestica HOM05D001798 ORTHO05D005040 7.4e-28 127.5 122 54.1
CSS0007301 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 9.6e-28 127.1 133 54.9
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 1.6e-27 126.3 122 55.7
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 2.8e-27 125.6 123 56.9
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 6.2e-27 124.4 125 55.2
CAN.G321.14 Capsicum annuum HOM05D001798 ORTHO05D005040 1.4e-26 123.2 144 51.4
CsaV3_1G031530 Cucumis sativus L. HOM05D001798 ORTHO05D005040 1.8e-26 122.9 119 56.3
FvH4_3g45900 Fragaria vesca HOM05D001798 ORTHO05D005040 2.4e-26 122.5 120 56.7
MELO3C017469.2 Cucumis melo HOM05D001798 ORTHO05D005040 5.3e-26 121.3 119 56.3
RcHm_v2.0_Chr4g0402691 Rosa chinensis HOM05D001798 ORTHO05D005040 2.0e-25 119.4 127 53.5
CiPaw.08G019800 Carya illinoinensis HOM05D001798 ORTHO05D005040 2.6e-25 119.0 122 54.9
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 2.6e-25 119.0 115 54.8
FvH4_4g09360 Fragaria vesca HOM05D001798 ORTHO05D005040 5.8e-25 117.9 120 55.8
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 5.8e-25 117.9 121 55.4
PGR142G4397 Punica granatum HOM05D001798 ORTHO05D005040 7.6e-25 117.5 131 50.4
FAN22G0641 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.0e-24 117.1 120 55.0
RcHm_v2.0_Chr4g0402701 Rosa chinensis HOM05D001798 ORTHO05D005040 1.0e-24 117.1 127 53.5
Aqoxy7G03082 Aquilegia oxysepala HOM05D001798 ORTHO05D005040 1.3e-24 116.7 136 50.0
Eucgr.C00167 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.3e-24 116.7 122 53.3
THA.LOC104811795 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 1.3e-24 116.7 116 55.2
SalBow1G2776 Salvia bowleyana HOM05D001798 ORTHO05D005040 1.7e-24 116.3 105 59.0
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 2.9e-24 115.5 127 54.3
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 2.9e-24 115.5 127 54.3
Sed0020469 Sechium edule HOM05D001798 ORTHO05D005040 3.8e-24 115.2 117 54.7
THA.LOC104817796 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 1.1e-23 113.6 113 55.8
Potri.006G273500 Populus trichocarpa HOM05D001798 ORTHO05D005040 1.9e-23 112.8 126 49.2
Potri.006G273566 Populus trichocarpa HOM05D001798 ORTHO05D005040 1.9e-23 112.8 126 49.2
CSS0022506 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 2.5e-23 112.5 127 53.5
CSS0019887 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 4.2e-23 111.7 127 53.5
Gohir.D06G107900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 2.7e-22 109.0 121 46.3
Potri.018G006800 Populus trichocarpa HOM05D001798 ORTHO05D005040 6.0e-22 107.8 130 50.0
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 7.9e-22 107.5 114 52.6
Eucgr.C02285 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.8e-21 106.3 127 48.0
Ca_21215_v3 Cicer arietinum L. HOM05D001798 ORTHO05D005040 2.3e-21 105.9 116 50.9
FAN20G2332 Fragaria x ananassa HOM05D001798 ORTHO05D005040 3.9e-21 105.1 121 48.8
MBI16_g35924_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 3.9e-21 105.1 112 50.0
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 5.1e-21 104.8 122 48.4
AT5G57510 Arabidopsis thaliana HOM05D001798 ORTHO05D005040 8.7e-21 104.0 117 51.3
AL8G33450 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 1.5e-20 103.2 117 49.6
AL8G33510 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 1.5e-20 103.2 117 49.6
Haze_21745 Corylus avellana HOM05D001798 ORTHO05D005040 1.5e-20 103.2 124 47.6
RcHm_v2.0_Chr6g0305001 Rosa chinensis HOM05D001798 ORTHO05D005040 1.5e-20 103.2 118 50.0
FvH4_2g36750 Fragaria vesca HOM05D001798 ORTHO05D005040 1.9e-20 102.8 118 49.2
FAN27G0855 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.9e-20 102.8 118 49.2
Gorai.010G122600 Gossypium raimondii HOM05D001798 ORTHO05D005040 1.9e-20 102.8 124 45.2
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 2.5e-20 102.4 115 47.0
BcaB08g36104 Brassica carinata HOM05D001798 ORTHO05D005040 3.3e-20 102.1 116 50.9
CARHR271290 Cardamine hirsuta HOM05D001798 ORTHO05D005040 3.3e-20 102.1 118 50.0
Ciclev10010207m.g Citrus clementina HOM05D001798 ORTHO05D005040 3.3e-20 102.1 113 56.6
BcaC03g14152 Brassica carinata HOM05D001798 ORTHO05D005040 5.7e-20 101.3 112 53.6
C02p14230 Brassica napus HOM05D001798 ORTHO05D005040 5.7e-20 101.3 112 53.6
BolC2t07547H Brassica oleracea HOM05D001798 ORTHO05D005040 5.7e-20 101.3 112 53.6
CANSAT11G0905 Cannabis sativa HOM05D001798 ORTHO05D005040 7.4e-20 100.9 148 43.2
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 7.4e-20 100.9 119 50.4
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 7.4e-20 100.9 119 50.4
Glyma.13G095700 Glycine max HOM05D001798 ORTHO05D005040 7.4e-20 100.9 116 50.9
Ciclev10010310m.g Citrus clementina HOM05D001798 ORTHO05D005040 9.7e-20 100.5 113 54.0
Gohir.A06G105500 Gossypium hirsutum HOM05D001798 ORTHO05D005040 9.7e-20 100.5 123 44.7
Lalb_Chr12g0199341 Lupinus albus HOM05D001798 ORTHO05D005040 9.7e-20 100.5 117 51.3
Cfa013270 Carpinus fangiana HOM05D001798 ORTHO05D005040 1.3e-19 100.1 114 50.9
Eucgr.C02286 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.3e-19 100.1 118 49.2
Thhalv10015454m.g Eutrema salsugineum HOM05D001798 ORTHO05D005040 1.3e-19 100.1 118 51.7
Medtr4g128470 Medicago truncatula HOM05D001798 ORTHO05D005040 1.3e-19 100.1 111 51.4
MBI16_g35923_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 2.2e-19 99.4 112 47.3
A02p08470 Brassica napus HOM05D001798 ORTHO05D005040 2.8e-19 99.0 112 52.7
BraA02t05918Z Brassica rapa HOM05D001798 ORTHO05D005040 2.8e-19 99.0 112 52.7
Rhsim01G0006100 Rhododendron simsii HOM05D001798 ORTHO05D005040 2.8e-19 99.0 93 59.1
Sabra06G0212200 Salix brachista HOM05D001798 ORTHO05D005040 2.8e-19 99.0 120 46.7
Sp6g19210 Schrenkiella parvula HOM05D001798 ORTHO05D005040 2.8e-19 99.0 118 50.8
FAN11G1762 Fragaria x ananassa HOM05D001798 ORTHO05D005040 3.7e-19 98.6 99 56.6
Haze_21738 Corylus avellana HOM05D001798 ORTHO05D005040 4.8e-19 98.2 114 50.9
Carub.0008s1801 Capsella rubella HOM05D001798 ORTHO05D005040 8.2e-19 97.4 117 50.4
VMungo1215G0796 Vigna mungo HOM05D001798 ORTHO05D005040 8.2e-19 97.4 125 47.2
Glyma.17G064300 Glycine max HOM05D001798 ORTHO05D005040 1.1e-18 97.1 118 50.0
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 1.1e-18 97.1 125 48.0
BcaB05g22348 Brassica carinata HOM05D001798 ORTHO05D005040 1.8e-18 96.3 115 52.2
FAN15G2712 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.8e-18 96.3 108 50.0
MBI16_g35927_MAGBIO Magnolia biondii HOM05D000772 ORTHO05D005040 1.8e-18 96.3 108 49.1
Psat4g011600 Pisum sativum HOM05D001798 ORTHO05D005040 1.8e-18 96.3 113 54.0
Aa31LG3G13380 Aethionema arabicum HOM05D001798 ORTHO05D005040 2.4e-18 95.9 114 49.1
Cfa013271 Carpinus fangiana HOM05D001798 ORTHO05D005040 2.4e-18 95.9 121 49.6
CiPaw.08G037100 Carya illinoinensis HOM05D001798 ORTHO05D005040 2.4e-18 95.9 124 47.6
Lsat_1_v5_gn_7_54461 Lactuca sativa HOM05D001798 ORTHO05D005040 2.4e-18 95.9 120 47.5
HanXRQChr05g0137241 Helianthus annuus HOM05D001798 ORTHO05D005040 3.1e-18 95.5 147 45.6
MD15G1107700 Malus domestica HOM05D001798 ORTHO05D005040 3.1e-18 95.5 137 43.1
TPR.G5377 Trifolium pratense HOM05D001798 ORTHO05D005040 5.3e-18 94.7 113 50.4
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 6.9e-18 94.4 116 44.8
ECA240G2061 Erigeron canadensis HOM05D001798 ORTHO05D005040 6.9e-18 94.4 144 43.8
FAN21G0239 Fragaria x ananassa HOM05D001798 ORTHO05D005040 6.9e-18 94.4 99 55.6
Prupe.1G460000 Prunus persica HOM05D001798 ORTHO05D005040 9.0e-18 94.0 124 44.4
HanXRQChr09g0254491 Helianthus annuus HOM05D001798 ORTHO05D005040 1.5e-17 93.2 143 41.3
RcHm_v2.0_Chr1g0336341 Rosa chinensis HOM05D001798 ORTHO05D005040 1.5e-17 93.2 117 47.9
PSO349G0296 Papaver somniferum HOM05D001798 ORTHO05D005040 2.0e-17 92.8 142 46.5
Sabra06G0211900 Salix brachista HOM05D001798 ORTHO05D005040 2.0e-17 92.8 118 42.4
Phvul.003G146800 Phaseolus vulgaris HOM05D001798 ORTHO05D005040 2.6e-17 92.4 119 49.6
Lj4g0012331 Lotus japonicus HOM05D001798 ORTHO05D005040 3.4e-17 92.0 122 46.7
Haze_21740 Corylus avellana HOM05D001798 ORTHO05D005040 2.2e-16 89.4 111 47.7
MD08G1128200 Malus domestica HOM05D001798 ORTHO05D005040 5.0e-16 88.2 134 44.0
AUR62022665 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.4e-15 86.7 131 44.3
Lsat_1_v5_gn_8_67120 Lactuca sativa HOM05D001798 ORTHO05D005040 1.9e-15 86.3 138 40.6
AUR62020597 Chenopodium quinoa HOM05D001798 ORTHO05D005040 3.2e-15 85.5 128 43.8
CiPaw.07G212400 Carya illinoinensis HOM05D001798 ORTHO05D005040 5.5e-15 84.7 118 46.6
Sc01g0002270 Simmondsia chinensis HOM05D001798 ORTHO05D005040 5.5e-15 84.7 134 41.8
Ah.05g179040 Amaranthus hybridus HOM05D001798 ORTHO05D005040 1.4e-13 80.1 164 39.0
BcaC04g19961 Brassica carinata HOM05D001798 ORTHO05D005040 2.3e-13 79.3 86 54.7
BolC9t57787H Brassica oleracea HOM05D001798 ORTHO05D005040 2.3e-13 79.3 86 54.7
Cpa.g.sc23.17 Carica papaya HOM05D001798 ORTHO05D005040 3.0e-13 79.0 116 42.2
AUR62009071 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.9e-12 76.3 130 42.3
Thecc.09G007300 Theobroma cacao HOM05D001798 ORTHO05D005040 3.3e-12 75.5 72 59.7
Atru.chr7.2645 Acer truncatum HOM05D001798 ORTHO05D005040 4.3e-12 75.1 126 43.7
Ah.11g043870 Amaranthus hybridus HOM05D001798 ORTHO05D005040 1.3e-11 73.6 125 43.2
MBI16_g35928_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 1.8e-10 69.7 95 46.3
Os08g0448100 Oryza sativa ssp. japonica HOM05D001798 ORTHO05D005040 1.2e-09 67.0 143 35.7
ClCG10G000980 Citrullus lanatus HOM05D001798 ORTHO05D022392 1.5e-09 66.6 125 39.2
Nitab4.5_0004131g0070 Nicotiana tabacum HOM05D001798 ORTHO05D005040 1.5e-09 66.6 128 38.3
MELO3C013791.2 Cucumis melo HOM05D001798 ORTHO05D022392 2.6e-09 65.9 128 34.4
HPP92_017412 Vanilla planifolia HOM05D001798 ORTHO05D005040 4.5e-09 65.1 163 33.1
Ciclev10010429m.g Citrus clementina HOM05D001798 ORTHO05D005040 5.9e-09 64.7 103 46.6
ATR0580G067 Amborella trichopoda HOM05D001798 ORTHO05D005040 7.7e-09 64.3 110 33.6
PGSC0003DMG400026318 Solanum tuberosum HOM05D001798 ORTHO05D005040 1.7e-08 63.2 123 38.2
HPP92_010486 Vanilla planifolia HOM05D001798 ORTHO05D005040 1.7e-08 63.2 163 33.1
EL10Ac2g03758 Beta vulgaris HOM05D001798 ORTHO05D005040 2.9e-08 62.4 147 35.4
Nn2g12703 Nelumbo nucifera HOM05D001798 ORTHO05D005040 2.9e-08 62.4 119 35.3
SHI04313 Sapria himalayana HOM05D001798 ORTHO05D005040 6.5e-08 61.2 95 44.2
Nitab4.5_0004131g0060 Nicotiana tabacum HOM05D001798 ORTHO05D005040 1.1e-07 60.5 116 38.8
Sed0003670 Sechium edule HOM05D001798 ORTHO05D022392 9.4e-07 57.4 118 39.0
Lj1g0012048 Lotus japonicus HOM05D021496 ORTHO05D022761 1.2e-06 57.0 101 42.6
Cpa.g.sc95.59 Carica papaya HOM05D001798 ORTHO05D005040 3.6e-06 55.5 96 38.5


User provided reference genes

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