Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold12G06036 Striga asiatica HOM05D005452 ORTHO05D006618 1.0e-43 179.9 101 100.0
SGA_v2.0_scaffold293G47424 Striga asiatica HOM05D005452 ORTHO05D006618 4.3e-39 164.5 99 92.9
unitig_22.g6942 Utricularia gibba HOM05D005452 ORTHO05D006618 1.9e-31 139.0 101 81.2
Migut.K00615 Erythranthe guttata HOM05D005452 ORTHO05D006618 4.8e-30 134.4 100 79.0
SalBow6G4340 Salvia bowleyana HOM05D005452 ORTHO05D006618 9.0e-29 130.2 100 76.0
Oeu056705.1 Olea europaea HOM05D005452 ORTHO05D006618 1.5e-28 129.4 104 73.1
SalBow6G0301 Salvia bowleyana HOM05D005452 ORTHO05D006618 1.5e-28 129.4 100 76.0
SalBow6G1267 Salvia bowleyana HOM05D005452 ORTHO05D006618 1.5e-28 129.4 100 76.0
SalBow6G2856 Salvia bowleyana HOM05D005452 ORTHO05D006618 1.5e-28 129.4 100 76.0
SalBow6G0335 Salvia bowleyana HOM05D005452 ORTHO05D006618 4.5e-28 127.9 100 75.0
SalBow6G6484 Salvia bowleyana HOM05D005452 ORTHO05D006618 4.5e-28 127.9 100 76.0
SalBow6G4107 Salvia bowleyana HOM05D005452 ORTHO05D006618 1.3e-27 126.3 84 83.3
SalBow6G4977 Salvia bowleyana HOM05D005452 ORTHO05D006618 1.3e-27 126.3 84 83.3
SalBow6G3385 Salvia bowleyana HOM05D005452 ORTHO05D006618 3.8e-27 124.8 83 81.9
Hma1.2p1_0079F.1_g041110 Hydrangea macrophylla HOM05D005452 ORTHO05D006618 6.5e-27 124.0 87 77.0
CSS0031935 Camellia sinensis var. sinensis HOM05D005452 ORTHO05D006618 1.4e-26 122.9 88 77.3
Dinv15209 Davidia involucrata HOM05D005452 ORTHO05D006618 5.5e-26 120.9 88 76.1
Sopen10g023920 Solanum pennellii HOM05D005452 ORTHO05D006618 7.2e-26 120.6 88 76.1
Nitab4.5_0002322g0150 Nicotiana tabacum HOM05D001410 ORTHO05D006618 2.1e-25 119.0 107 68.2
Solyc10g054060.2 Solanum lycopersicum HOM05D005452 ORTHO05D006618 2.1e-25 119.0 88 76.1
TAR371G0357 Trochodendron aralioides HOM05D005452 ORTHO05D006618 2.1e-25 119.0 84 76.2
TAR629G2696 Trochodendron aralioides HOM05D005452 ORTHO05D006618 2.1e-25 119.0 85 75.3
GSVIVG01003295001 Vitis vinifera HOM05D005452 ORTHO05D006618 2.1e-25 119.0 88 75.0
Nitab4.5_0004217g0010 Nicotiana tabacum HOM05D001410 ORTHO05D006618 3.6e-25 118.2 90 75.6
Duzib268G1139 Durio zibethinus HOM05D005452 ORTHO05D006618 4.6e-25 117.9 95 69.5
Nitab4.5_0000524g0050 Nicotiana tabacum HOM05D005452 ORTHO05D006618 4.6e-25 117.9 91 73.6
Rhsim12G0039600 Rhododendron simsii HOM05D005452 ORTHO05D006618 6.1e-25 117.5 96 71.9
vmacro06707 Vaccinium macrocarpon HOM05D005452 ORTHO05D006618 1.0e-24 116.7 82 76.8
Lalb_Chr03g0040661 Lupinus albus HOM05D005452 ORTHO05D006618 1.8e-24 115.9 80 78.8
Thecc.02G263300 Theobroma cacao HOM05D005452 ORTHO05D006618 1.8e-24 115.9 80 76.2
Manes.13G021600 Manihot esculenta HOM05D005452 ORTHO05D006618 2.3e-24 115.5 91 67.0
Ciclev10033123m.g Citrus clementina HOM05D005452 ORTHO05D006618 3.9e-24 114.8 81 79.0
QL03p056962 Quercus lobata HOM05D005452 ORTHO05D006618 3.9e-24 114.8 80 78.8
Actinidia01359 Actinidia chinensis HOM05D005452 ORTHO05D006618 5.1e-24 114.4 90 72.2
Actinidia08127 Actinidia chinensis HOM05D005452 ORTHO05D006618 5.1e-24 114.4 84 75.0
AT3G26360 Arabidopsis thaliana HOM05D005452 ORTHO05D006618 5.1e-24 114.4 99 62.6
CAN.G128.103 Capsicum annuum HOM05D005452 ORTHO05D000001 5.1e-24 114.4 99 65.7
Lalb_Chr01g0021741 Lupinus albus HOM05D005452 ORTHO05D006618 5.1e-24 114.4 80 77.5
Lj3C54T6 Lonicera japonica HOM05D005452 ORTHO05D006618 6.7e-24 114.0 83 73.5
Sc04g0009650 Simmondsia chinensis HOM05D005452 ORTHO05D006618 6.7e-24 114.0 87 71.3
CiPaw.05G172100 Carya illinoinensis HOM05D005452 ORTHO05D006618 8.8e-24 113.6 80 78.8
AUR62005503 Chenopodium quinoa HOM05D005452 ORTHO05D006618 8.8e-24 113.6 87 72.4
CiPaw.04G056800 Carya illinoinensis HOM05D005452 ORTHO05D006618 1.1e-23 113.2 80 78.8
Gohir.A05G223400 Gossypium hirsutum HOM05D005452 ORTHO05D006618 1.1e-23 113.2 99 68.7
Peaxi162Scf00128g00434 Petunia axillaris HOM05D005452 ORTHO05D006618 1.1e-23 113.2 102 61.8
Psat5g193600 Pisum sativum HOM05D005452 ORTHO05D006618 1.1e-23 113.2 90 68.9
CANSAT11G1680 Cannabis sativa HOM05D005452 ORTHO05D006618 1.5e-23 112.8 99 65.7
FvH4_5g21170 Fragaria vesca HOM05D005452 ORTHO05D006618 2.0e-23 112.5 95 69.5
Peaxi162Scf00067g00116 Petunia axillaris HOM05D005452 ORTHO05D006618 2.0e-23 112.5 100 62.0
EL10Ac5g10516 Beta vulgaris HOM05D005452 ORTHO05D006618 2.5e-23 112.1 101 62.4
ClCG10G012250 Citrullus lanatus HOM05D005452 ORTHO05D006618 2.5e-23 112.1 80 78.8
Glyma.18G249300 Glycine max HOM05D005452 ORTHO05D006618 3.3e-23 111.7 80 76.2
Gorai.009G233700 Gossypium raimondii HOM05D005452 ORTHO05D006618 3.3e-23 111.7 95 69.5
MD06G1040200 Malus domestica HOM05D005452 ORTHO05D006618 3.3e-23 111.7 87 67.8
Lj4g0014743 Lotus japonicus HOM05D005452 ORTHO05D006618 4.3e-23 111.3 80 75.0
Lj5g0027337 Lotus japonicus HOM05D005452 ORTHO05D006618 4.3e-23 111.3 80 75.0
Eucgr.B03269 Eucalyptus grandis HOM05D005452 ORTHO05D006618 5.7e-23 110.9 78 78.2
Sp2g15510 Schrenkiella parvula HOM05D005452 ORTHO05D006618 5.7e-23 110.9 99 61.6
THA.LOC104824009 Tarenaya hassleriana HOM05D005452 ORTHO05D006618 5.7e-23 110.9 99 61.6
FAN13G0782 Fragaria x ananassa HOM05D005452 ORTHO05D006618 7.4e-23 110.5 95 68.4
Glyma.09G244200 Glycine max HOM05D005452 ORTHO05D006618 7.4e-23 110.5 80 76.2
Lsat_1_v5_gn_4_85301 Lactuca sativa HOM05D005452 ORTHO05D006618 7.4e-23 110.5 85 69.4
VMungo1080G1735 Vigna mungo HOM05D005452 ORTHO05D006618 7.4e-23 110.5 80 72.5
BcaB07g30231 Brassica carinata HOM05D005452 ORTHO05D006618 9.7e-23 110.2 99 64.6
BcaC03g17336 Brassica carinata HOM05D005452 ORTHO05D006618 9.7e-23 110.2 99 64.6
A02p34530 Brassica napus HOM05D005452 ORTHO05D006618 9.7e-23 110.2 99 64.6
C02p52850 Brassica napus HOM05D005452 ORTHO05D006618 9.7e-23 110.2 99 64.6
BraA02t08463Z Brassica rapa HOM05D005452 ORTHO05D006618 9.7e-23 110.2 99 64.6
Carub.0005s0428 Capsella rubella HOM05D005452 ORTHO05D006618 9.7e-23 110.2 99 60.6
Lsat_1_v5_gn_8_152800 Lactuca sativa HOM05D005452 ORTHO05D006618 9.7e-23 110.2 86 69.8
Oeu049174.1 Olea europaea HOM05D005452 ORTHO05D006618 9.7e-23 110.2 88 73.9
C07p35420 Brassica napus HOM05D005452 ORTHO05D006618 1.3e-22 109.8 99 63.6
Prupe.5G046400 Prunus persica HOM05D005452 ORTHO05D006618 1.3e-22 109.8 81 74.1
Hund25399 Selenicereus undatus HOM05D005452 ORTHO05D006618 1.3e-22 109.8 96 67.7
A06p42060 Brassica napus HOM05D005452 ORTHO05D006618 1.7e-22 109.4 99 63.6
BolC7t44066H Brassica oleracea HOM05D005452 ORTHO05D006618 1.7e-22 109.4 99 62.6
BraA06t27123Z Brassica rapa HOM05D005452 ORTHO05D006618 1.7e-22 109.4 99 63.6
AUR62024237 Chenopodium quinoa HOM05D005452 ORTHO05D006618 1.7e-22 109.4 104 62.5
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 1.7e-22 109.4 80 75.0
DCAR_003344 Daucus carota HOM05D005452 ORTHO05D006618 1.7e-22 109.4 85 68.2
ECA233G5110 Erigeron canadensis HOM05D005452 ORTHO05D006618 1.7e-22 109.4 82 72.0
HanXRQChr12g0371911 Helianthus annuus HOM05D005452 ORTHO05D006618 1.7e-22 109.4 82 72.0
RcHm_v2.0_Chr7g0208311 Rosa chinensis HOM05D005452 ORTHO05D006618 1.7e-22 109.4 86 69.8
Hund06040 Selenicereus undatus HOM05D005452 ORTHO05D006618 2.2e-22 109.0 104 64.4
Cpa.g.c31584 Carica papaya HOM05D005452 ORTHO05D006618 2.8e-22 108.6 80 73.8
THA.LOC104805276 Tarenaya hassleriana HOM05D005452 ORTHO05D006618 2.8e-22 108.6 99 59.6
FAN04G1087 Fragaria x ananassa HOM05D005452 ORTHO05D006618 3.7e-22 108.2 93 67.7
FAN18G0628 Fragaria x ananassa HOM05D005452 ORTHO05D006618 3.7e-22 108.2 86 68.6
FAN08G2976 Fragaria x ananassa HOM05D005452 ORTHO05D006618 4.8e-22 107.8 93 67.7
MD02G1109400 Malus domestica HOM05D005452 ORTHO05D006618 6.3e-22 107.5 87 64.4
Atru.chr11.2163 Acer truncatum HOM05D005452 ORTHO05D006618 8.2e-22 107.1 100 60.0
COL.COLO4_23485 Corchorus olitorius HOM05D005452 ORTHO05D006618 8.2e-22 107.1 81 71.6
AL5G15130 Arabidopsis lyrata HOM05D005452 ORTHO05D006618 1.1e-21 106.7 99 59.6
Cfa009234 Carpinus fangiana HOM05D005452 ORTHO05D006618 1.1e-21 106.7 79 73.4
Thhalv10005186m.g Eutrema salsugineum HOM05D005452 ORTHO05D006618 1.1e-21 106.7 99 61.6
MD09G1284200 Malus domestica HOM05D005452 ORTHO05D006618 1.4e-21 106.3 78 71.8
Medtr3g464760 Medicago truncatula HOM05D005452 ORTHO05D006618 1.4e-21 106.3 80 72.5
BolC2t11364H Brassica oleracea HOM05D005452 ORTHO05D006618 1.8e-21 105.9 99 62.6
PGR102G3216 Punica granatum HOM05D005452 ORTHO05D006618 1.8e-21 105.9 78 74.4
CARHR147370 Cardamine hirsuta HOM05D005452 ORTHO05D006618 2.4e-21 105.5 99 58.6
Ca_14963_v3 Cicer arietinum L. HOM05D005452 ORTHO05D006618 2.4e-21 105.5 80 72.5
ATR0691G211 Amborella trichopoda HOM05D005452 ORTHO05D006618 3.1e-21 105.1 90 64.4
Thhalv10005184m.g Eutrema salsugineum HOM05D005452 ORTHO05D006618 3.1e-21 105.1 99 60.6
Sed0011581 Sechium edule HOM05D005452 ORTHO05D006618 3.1e-21 105.1 83 71.1
TPR.G32914 Trifolium pratense HOM05D005452 ORTHO05D006618 3.1e-21 105.1 79 70.9
VMungo1383G1569 Vigna mungo HOM05D005452 ORTHO05D006618 3.1e-21 105.1 110 55.5
SalBow6G5661 Salvia bowleyana HOM05D005452 ORTHO05D006618 4.1e-21 104.8 86 72.1
Aa31LG2G6150 Aethionema arabicum HOM05D005452 ORTHO05D006618 6.9e-21 104.0 93 61.3
Phvul.008G048300 Phaseolus vulgaris HOM05D005452 ORTHO05D006618 6.9e-21 104.0 80 70.0
MELO3C030920.2 Cucumis melo HOM05D005452 ORTHO05D006618 9.1e-21 103.6 80 72.5
Gohir.D05G226100 Gossypium hirsutum HOM05D005452 ORTHO05D006618 1.2e-20 103.2 75 74.7
Potri.010G048600 Populus trichocarpa HOM05D005452 ORTHO05D006618 2.6e-20 102.1 81 65.4
Cc01_g03580 Coffea canephora HOM05D005452 ORTHO05D006618 3.4e-20 101.7 85 64.7
MBI15_g04991_MAGBIO Magnolia biondii HOM05D005452 ORTHO05D006618 3.4e-20 101.7 79 69.6
SHI03748 Sapria himalayana HOM05D005452 ORTHO05D006618 4.5e-20 101.3 81 67.9
Aqoxy3G01257 Aquilegia oxysepala HOM05D005452 ORTHO05D006618 5.9e-20 100.9 91 59.3
CsaV3_3G032030 Cucumis sativus L. HOM05D005452 ORTHO05D006618 5.9e-20 100.9 80 70.0
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 5.9e-20 100.9 110 53.6
TWI36G1628 Tripterygium wilfordii HOM05D005452 ORTHO05D006618 2.2e-19 99.0 107 55.1
TWI18G1019 Tripterygium wilfordii HOM05D005452 ORTHO05D006618 2.9e-19 98.6 107 54.2
Nn1g08774 Nelumbo nucifera HOM05D005452 ORTHO05D006618 3.8e-19 98.2 84 61.9
Lj4g0021307 Lotus japonicus HOM05D005452 ORTHO05D006618 6.5e-19 97.4 99 57.6
HPP92_017381 Vanilla planifolia HOM05D005452 ORTHO05D006618 3.2e-18 95.1 93 55.9
PSO210G2974 Papaver somniferum HOM05D005452 ORTHO05D006618 7.2e-18 94.0 109 49.5
CDE10G1265 Ceratophyllum demersum HOM05D005452 ORTHO05D006618 9.4e-18 93.6 78 62.8
PSO017G6805 Papaver somniferum HOM05D005452 ORTHO05D006618 1.6e-17 92.8 81 59.3
SEGI_39778 Sequoiadendron giganteum HOM05D005452 ORTHO05D006618 2.7e-17 92.0 78 64.1
SEGI_27388 Sequoiadendron giganteum HOM05D005452 ORTHO05D006618 4.7e-17 91.3 78 64.1
MD04G1159200 Malus domestica HOM05D005452 ORTHO05D006618 6.7e-16 87.4 78 62.8
Zm00001eb053730 Zea mays HOM05D005452 ORTHO05D006618 6.7e-16 87.4 80 56.2
Zm00001eb217020 Zea mays HOM05D005452 ORTHO05D006618 8.8e-16 87.0 80 55.0
MD12G1125700 Malus domestica HOM05D005452 ORTHO05D006618 3.3e-15 85.1 78 61.5
vmacro01118 Vaccinium macrocarpon HOM05D005452 ORTHO05D006618 2.2e-14 82.4 62 69.4
Os03g0694700 Oryza sativa ssp. japonica HOM05D005452 ORTHO05D006618 4.1e-13 78.2 82 52.4
MBI15_g11303_MAGBIO Magnolia biondii HOM05D005452 ORTHO05D006618 9.1e-13 77.0 84 57.1
unitig_8.g2920 Utricularia gibba HOM05D005452 ORTHO05D006618 1.0e-11 73.6 53 75.5
SalBow6G2133 Salvia bowleyana HOM05D009895 ORTHO05D006618 3.8e-11 71.6 65 63.1
Zm00001eb217070 Zea mays HOM05D000876 ORTHO05D000285 1.9e-10 69.3 82 48.8
Medtr3g450960 Medicago truncatula HOM05D005452 ORTHO05D006618 6.1e-09 64.3 57 63.2
SalBow6G0426 Salvia bowleyana HOM05D005452 ORTHO05D006618 4.0e-08 61.6 44 75.0
Nn1g09342 Nelumbo nucifera HOM05D005452 ORTHO05D006618 1.7e-06 56.2 60 51.7


User provided reference genes

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