Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold12G06032 Striga asiatica HOM05D005031 ORTHO05D006098 3.8e-83 311.6 174 100.0
SalBow1G8617 Salvia bowleyana HOM05D005031 ORTHO05D006098 7.4e-71 270.8 174 86.8
Oeu031856.2 Olea europaea HOM05D005031 ORTHO05D006098 9.7e-71 270.4 174 76.4
MSTRG.10716 Avicennia marina HOM05D005031 ORTHO05D006098 2.2e-70 269.2 174 86.2
Oeu045637.1 Olea europaea HOM05D005031 ORTHO05D006098 6.9e-69 264.2 174 75.3
Migut.K00291 Erythranthe guttata HOM05D005031 ORTHO05D006098 3.8e-67 258.5 174 82.8
Hma1.2p1_1493F.1_g286836 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 7.2e-66 254.2 174 73.0
Nitab4.5_0001036g0100 Nicotiana tabacum HOM05D005031 ORTHO05D006098 2.7e-65 252.3 174 78.2
Nitab4.5_0002545g0040 Nicotiana tabacum HOM05D005031 ORTHO05D006098 3.6e-65 251.9 174 78.2
Solyc07g006150.3 Solanum lycopersicum HOM05D005031 ORTHO05D006098 7.9e-65 250.8 174 78.2
Sopen07g002260 Solanum pennellii HOM05D005031 ORTHO05D006098 7.9e-65 250.8 174 78.2
CAN.G1190.6 Capsicum annuum HOM05D005031 ORTHO05D006098 1.0e-64 250.4 174 70.7
vmacro01000 Vaccinium macrocarpon HOM05D005031 ORTHO05D006098 2.3e-64 249.2 174 80.5
PGSC0003DMG400011218 Solanum tuberosum HOM05D005031 ORTHO05D006098 6.7e-64 247.7 174 77.6
Hma1.2p1_2290F.1_g319050 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 2.5e-63 245.7 174 69.5
COL.COLO4_10074 Corchorus olitorius HOM05D005031 ORTHO05D006098 3.3e-63 245.4 174 72.4
Ciclev10012924m.g Citrus clementina HOM05D005031 ORTHO05D006098 5.7e-63 244.6 174 71.8
Duzib168G1565 Durio zibethinus HOM05D005031 ORTHO05D006098 1.3e-62 243.4 174 71.3
EL10Ac7g17961 Beta vulgaris HOM05D005031 ORTHO05D006098 2.8e-62 242.3 174 69.0
Nn8g40193 Nelumbo nucifera HOM05D005031 ORTHO05D006098 2.8e-62 242.3 174 70.1
Thecc.09G157500 Theobroma cacao HOM05D005031 ORTHO05D006098 2.8e-62 242.3 174 70.7
Duzib187G1655 Durio zibethinus HOM05D005031 ORTHO05D006098 3.7e-62 241.9 174 70.7
Gohir.D08G098400 Gossypium hirsutum HOM05D005031 ORTHO05D006098 6.3e-62 241.1 174 70.1
Cc06_g14310 Coffea canephora HOM05D005031 ORTHO05D006098 1.1e-61 240.4 174 75.9
Duzib187G0728 Durio zibethinus HOM05D005031 ORTHO05D006098 1.1e-61 240.4 174 70.1
Manes.06G033000 Manihot esculenta HOM05D005031 ORTHO05D006098 1.4e-61 240.0 174 73.0
GSVIVG01033204001 Vitis vinifera HOM05D005031 ORTHO05D006098 1.4e-61 240.0 174 69.5
Hma1.2p1_2438F.1_g322190 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 1.8e-61 239.6 148 78.4
Medtr4g130180 Medicago truncatula HOM05D005031 ORTHO05D006098 1.8e-61 239.6 174 68.4
Actinidia33308 Actinidia chinensis HOM05D005031 ORTHO05D006098 2.4e-61 239.2 174 76.4
AL4G13970 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 2.4e-61 239.2 174 69.0
Gorai.004G106100 Gossypium raimondii HOM05D005031 ORTHO05D006098 2.4e-61 239.2 174 69.5
Hund18050 Selenicereus undatus HOM05D005031 ORTHO05D006098 3.1e-61 238.8 174 68.4
Gohir.A08G087500 Gossypium hirsutum HOM05D005031 ORTHO05D006098 4.1e-61 238.4 174 69.0
Peaxi162Scf00038g00324 Petunia axillaris HOM05D005031 ORTHO05D006098 4.1e-61 238.4 174 67.8
HanXRQChr10g0307831 Helianthus annuus HOM05D005031 ORTHO05D006098 6.9e-61 237.7 174 74.7
Potri.018G101100 Populus trichocarpa HOM05D005031 ORTHO05D006098 1.5e-60 236.5 174 69.0
TWI73G0469 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 1.5e-60 236.5 174 69.0
Actinidia38656 Actinidia chinensis HOM05D005031 ORTHO05D006098 3.4e-60 235.3 174 74.7
AT2G23940 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 3.4e-60 235.3 174 66.7
Atru.chr12.1707 Acer truncatum HOM05D005031 ORTHO05D006098 4.5e-60 235.0 174 74.1
Ca_21160_v3 Cicer arietinum L. HOM05D005031 ORTHO05D006098 7.7e-60 234.2 174 66.1
TAR636G0261 Trochodendron aralioides HOM05D005031 ORTHO05D006098 7.7e-60 234.2 171 73.1
VMungo1215G0734 Vigna mungo HOM05D005031 ORTHO05D006098 7.7e-60 234.2 174 69.5
THA.LOC104803530 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 1.3e-59 233.4 174 65.5
Phvul.003G152700 Phaseolus vulgaris HOM05D005031 ORTHO05D006098 1.7e-59 233.0 174 69.0
TPR.G1244 Trifolium pratense HOM05D005031 ORTHO05D006098 1.7e-59 233.0 174 66.1
Dinv41325 Davidia involucrata HOM05D005031 ORTHO05D006098 2.2e-59 232.6 174 74.1
Glyma.17G070000 Glycine max HOM05D005031 ORTHO05D006098 2.2e-59 232.6 174 68.4
MD00G1059200 Malus domestica HOM05D005031 ORTHO05D006098 3.8e-59 231.9 174 66.7
Phvul.010G125500 Phaseolus vulgaris HOM05D005031 ORTHO05D006098 3.8e-59 231.9 174 68.4
THA.LOC104819960 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 3.8e-59 231.9 174 64.9
ClCG11G012690 Citrullus lanatus HOM05D005031 ORTHO05D006098 6.5e-59 231.1 174 71.8
Glyma.02G207700 Glycine max HOM05D005031 ORTHO05D006098 6.5e-59 231.1 174 67.8
arahy.Tifrunner.gnm1.ann1.QFVN2V Arachis hypogaea HOM05D005031 ORTHO05D006098 8.5e-59 230.7 174 67.8
MELO3C004109.2 Cucumis melo HOM05D005031 ORTHO05D006098 8.5e-59 230.7 174 70.1
CiPaw.06G050600 Carya illinoinensis HOM05D005031 ORTHO05D006098 1.9e-58 229.6 174 71.3
Lj4g0007960 Lotus japonicus HOM05D005031 ORTHO05D006098 1.9e-58 229.6 175 65.1
FvH4_3g25860 Fragaria vesca HOM05D005031 ORTHO05D006098 2.5e-58 229.2 174 64.9
FAN11G2096 Fragaria x ananassa HOM05D005031 ORTHO05D006098 2.5e-58 229.2 174 64.9
Aqoxy5G00990 Aquilegia oxysepala HOM05D005031 ORTHO05D006098 3.2e-58 228.8 171 73.1
CsaV3_2G007780 Cucumis sativus L. HOM05D005031 ORTHO05D006098 5.5e-58 228.0 174 65.5
FAN21G1649 Fragaria x ananassa HOM05D005031 ORTHO05D006098 5.5e-58 228.0 174 64.9
Rhsim03G0261100 Rhododendron simsii HOM05D005031 ORTHO05D006098 5.5e-58 228.0 196 67.9
Aa31LG2G20010 Aethionema arabicum HOM05D005031 ORTHO05D006098 7.2e-58 227.6 174 64.4
CANSAT11G2524 Cannabis sativa HOM05D005031 ORTHO05D006098 9.4e-58 227.3 174 66.1
ECA234G3840 Erigeron canadensis HOM05D005031 ORTHO05D006098 9.4e-58 227.3 174 69.5
Thhalv10026393m.g Eutrema salsugineum HOM05D005031 ORTHO05D006098 1.2e-57 226.9 174 63.8
RcHm_v2.0_Chr5g0047191 Rosa chinensis HOM05D005031 ORTHO05D006098 1.2e-57 226.9 174 64.4
Eucgr.H00166 Eucalyptus grandis HOM05D005031 ORTHO05D006098 1.6e-57 226.5 174 67.2
Lj6g0018969 Lotus japonicus HOM05D005031 ORTHO05D006098 1.6e-57 226.5 174 64.4
Sed0023985 Sechium edule HOM05D005031 ORTHO05D006098 1.6e-57 226.5 174 67.2
C01p08550 Brassica napus HOM05D005031 ORTHO05D006098 2.1e-57 226.1 174 63.2
CARHR184610 Cardamine hirsuta HOM05D005031 ORTHO05D006098 2.1e-57 226.1 171 64.9
FAN25G2017 Fragaria x ananassa HOM05D005031 ORTHO05D006098 2.7e-57 225.7 174 64.4
MD00G1091200 Malus domestica HOM05D005031 ORTHO05D006098 2.7e-57 225.7 174 65.5
Carub.0004s0310 Capsella rubella HOM05D005031 ORTHO05D006098 3.6e-57 225.3 174 63.2
RcHm_v2.0_Chr4g0405231 Rosa chinensis HOM05D005031 ORTHO05D006098 4.7e-57 224.9 174 63.8
BcaNung00560 Brassica carinata HOM05D005031 ORTHO05D006098 6.1e-57 224.6 174 62.6
BcaNung00561 Brassica carinata HOM05D005031 ORTHO05D006098 6.1e-57 224.6 174 62.6
C07p57970 Brassica napus HOM05D005031 ORTHO05D006098 6.1e-57 224.6 174 62.6
BolC7t46255H Brassica oleracea HOM05D005031 ORTHO05D006098 6.1e-57 224.6 174 62.6
PSO478G0084 Papaver somniferum HOM05D005031 ORTHO05D006098 7.9e-57 224.2 174 64.4
Prupe.1G100400 Prunus persica HOM05D005031 ORTHO05D006098 7.9e-57 224.2 174 63.8
BraA03t15048Z Brassica rapa HOM05D005031 ORTHO05D006098 1.0e-56 223.8 174 62.6
Sp7g28380 Schrenkiella parvula HOM05D005031 ORTHO05D006098 1.0e-56 223.8 174 63.8
BcaC09g51840 Brassica carinata HOM05D005031 ORTHO05D006098 1.4e-56 223.4 174 63.2
A03p59910 Brassica napus HOM05D005031 ORTHO05D006098 1.4e-56 223.4 174 62.6
Sabra18G0087000 Salix brachista HOM05D005031 ORTHO05D006098 1.8e-56 223.0 194 61.9
PSO017G4787 Papaver somniferum HOM05D005031 ORTHO05D006098 2.3e-56 222.6 174 64.4
QL01p011713 Quercus lobata HOM05D005031 ORTHO05D006098 3.0e-56 222.2 173 70.5
A01p07680 Brassica napus HOM05D005031 ORTHO05D006098 6.7e-56 221.1 174 62.6
Lalb_Chr07g0180011 Lupinus albus HOM05D005031 ORTHO05D006098 6.7e-56 221.1 175 64.0
BraA01t00711Z Brassica rapa HOM05D005031 ORTHO05D006098 8.8e-56 220.7 173 62.4
PGR031G2537 Punica granatum HOM05D005031 ORTHO05D006098 1.5e-55 219.9 174 64.4
ATR0580G158 Amborella trichopoda HOM05D005031 ORTHO05D006098 2.0e-55 219.5 174 63.2
Atru.chr12.1715 Acer truncatum HOM05D005031 ORTHO05D006098 2.6e-55 219.2 143 73.4
AL7G21640 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 4.4e-55 218.4 174 62.6
CSS0024126 Camellia sinensis var. sinensis HOM05D005031 ORTHO05D006098 4.4e-55 218.4 171 69.6
CSS0012616 Camellia sinensis var. sinensis HOM05D005031 ORTHO05D006098 5.7e-55 218.0 171 69.6
PSO675G4517 Papaver somniferum HOM05D005031 ORTHO05D006098 9.7e-55 217.2 174 62.1
HPP92_025776 Vanilla planifolia HOM05D005031 ORTHO05D006098 4.8e-54 214.9 174 63.2
CDE05G2574 Ceratophyllum demersum HOM05D005031 ORTHO05D006098 8.2e-54 214.2 174 61.5
arahy.Tifrunner.gnm1.ann1.0TL0BP Arachis hypogaea HOM05D005031 ORTHO05D006098 3.1e-53 212.2 198 58.6
TWI23G1034 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 9.1e-53 210.7 158 66.5
BolC1t00831H Brassica oleracea HOM05D005031 ORTHO05D006098 1.2e-52 210.3 164 62.8
BolC1t00837H Brassica oleracea HOM05D005031 ORTHO05D006098 1.2e-52 210.3 164 62.8
BolC1t00834H Brassica oleracea HOM05D005031 ORTHO05D006098 2.6e-52 209.1 148 67.6
Zm00001eb186920 Zea mays HOM05D005031 ORTHO05D006098 2.6e-52 209.1 175 59.4
AT4G30500 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 1.3e-51 206.8 174 60.9
Hma1.2p1_2725F.1_g327560 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 6.1e-49 198.0 122 77.9
Rhsim03G0260600 Rhododendron simsii HOM05D005031 ORTHO05D006098 1.0e-48 197.2 145 75.2
Sc05g0001840 Simmondsia chinensis HOM05D005031 ORTHO05D006098 2.3e-48 196.1 122 76.2
AUR62001168 Chenopodium quinoa HOM05D005031 ORTHO05D006098 8.8e-48 194.1 182 63.2
Lsat_1_v5_gn_5_88201 Lactuca sativa HOM05D005031 ORTHO05D006098 2.2e-46 189.5 176 58.0
MBI14_g16418_MAGBIO Magnolia biondii HOM05D005031 ORTHO05D006098 7.0e-45 184.5 145 64.1
Psat0s2826g0160 Pisum sativum HOM05D005031 ORTHO05D006098 2.0e-44 183.0 122 70.5
Os02g0666800 Oryza sativa ssp. japonica HOM05D005031 ORTHO05D006098 2.6e-44 182.6 175 56.0
Sed0023066 Sechium edule HOM05D005031 ORTHO05D006098 5.0e-43 178.3 146 64.4
AagrBONN_evm.TU.Sc2ySwM_368.3216 Anthoceros agrestis HOM05D005031 ORTHO05D006098 1.9e-42 176.4 171 53.2
SMO164G0234 Selaginella moellendorffii HOM05D005031 ORTHO05D006098 6.7e-40 167.9 176 52.3
Mapoly0003s0226 Marchantia polymorpha HOM05D005031 ORTHO05D006098 5.7e-39 164.9 174 48.9
AUR62022155 Chenopodium quinoa HOM05D005031 ORTHO05D006098 6.5e-35 151.4 94 75.5
Pp3c11_17250 Physcomitrium patens HOM05D005031 ORTHO05D006098 1.9e-34 149.8 173 46.2
CBR_g3690 Chara braunii HOM05D005031 ORTHO05D006098 2.5e-34 149.4 173 46.8
Ah.08g218880 Amaranthus hybridus HOM05D005031 ORTHO05D006098 1.6e-33 146.7 109 67.0
Haze_21256 Corylus avellana HOM05D005031 ORTHO05D006098 1.6e-33 146.7 95 72.6
Cpa.g.sc743.3 Carica papaya HOM05D005031 ORTHO05D006098 3.0e-32 142.5 93 73.1
BcaNung01743 Brassica carinata HOM05D005031 ORTHO05D006098 3.5e-28 129.0 86 69.8
unitig_62.g23488 Utricularia gibba HOM05D005031 ORTHO05D006098 8.6e-27 124.4 85 88.2
BcaB04g19089 Brassica carinata HOM05D005031 ORTHO05D006098 2.1e-25 119.8 74 73.0
CARHR238390 Cardamine hirsuta HOM05D005031 ORTHO05D006098 3.7e-22 109.0 96 51.0
Lj7A465G52 Lonicera japonica HOM05D005031 ORTHO05D006098 1.8e-21 106.7 78 62.8
BcaB08g34788 Brassica carinata HOM05D005031 ORTHO05D006098 7.0e-21 104.8 74 68.9
MELO3C020438.2 Cucumis melo HOM05D005031 ORTHO05D006098 3.3e-18 95.9 55 80.0
MELO3C010414.2 Cucumis melo HOM05D005031 ORTHO05D006098 7.3e-18 94.7 53 81.1
Cre02.g096850 Chlamydomonas reinhardtii HOM05D005031 ORTHO05D006098 1.8e-16 90.1 173 32.4
MELO3C032992.2 Cucumis melo HOM05D005031 ORTHO05D006098 4.4e-15 85.5 48 81.2
PRCOL_00004780 Prasinoderma coloniale HOM05D005031 ORTHO05D006098 7.5e-15 84.7 145 33.8
Rhsim03G0261000 Rhododendron simsii HOM05D005031 ORTHO05D006098 2.9e-14 82.8 80 55.0
MCO15G043 Micromonas commoda HOM05D005031 ORTHO05D006098 6.4e-14 81.6 133 34.6
MELO3C033057.2 Cucumis melo HOM05D005031 ORTHO05D006098 6.0e-12 75.1 38 86.8
CARHR184590 Cardamine hirsuta HOM05D005031 ORTHO05D006098 7.5e-07 58.2 48 54.2


User provided reference genes

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