Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold12G06029 Striga asiatica HOM05D003812 ORTHO05D004393 0.0e+00 1266.5 653 100.0
MSTRG.26255 Avicennia marina HOM05D003812 ORTHO05D004393 1.0e-213 747.3 664 63.6
SalBow5G1511 Salvia bowleyana HOM05D003812 ORTHO05D004393 2.0e-198 696.4 681 58.7
SalBow5G1547 Salvia bowleyana HOM05D003812 ORTHO05D004393 3.5e-198 695.7 683 58.6
Migut.K00296 Erythranthe guttata HOM05D003812 ORTHO05D004393 1.4e-186 657.1 689 55.7
CSS0041441 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 8.4e-168 594.7 679 52.6
Actinidia18400 Actinidia chinensis HOM05D003812 ORTHO05D004393 2.4e-167 593.2 675 52.6
GSVIVG01038248001 Vitis vinifera HOM05D003812 ORTHO05D004393 1.5e-156 557.4 662 51.5
Lsat_1_v5_gn_8_131861 Lactuca sativa HOM05D003812 ORTHO05D004393 1.6e-147 527.3 674 48.4
Ciclev10027241m.g Citrus clementina HOM05D003812 ORTHO05D004393 2.8e-147 526.6 670 49.7
DCAR_023841 Daucus carota HOM05D003812 ORTHO05D004393 1.4e-146 524.2 693 46.9
Rhsim09G0003800 Rhododendron simsii HOM05D003812 ORTHO05D004393 3.1e-146 523.1 723 44.5
Sopen12g006540 Solanum pennellii HOM05D003812 ORTHO05D004393 2.5e-143 513.5 667 48.4
Thecc.03G204100 Theobroma cacao HOM05D003812 ORTHO05D004393 3.2e-143 513.1 663 47.1
MD15G1143400 Malus domestica HOM05D003812 ORTHO05D004393 8.7e-141 505.0 691 44.4
HanXRQChr05g0135721 Helianthus annuus HOM05D003812 ORTHO05D004393 9.7e-140 501.5 653 47.6
Atru.chr3.1997_Atru.chr3.1998 Acer truncatum HOM05D003812 ORTHO05D004393 2.2e-139 500.4 660 45.9
TAR362G0390 Trochodendron aralioides HOM05D003812 ORTHO05D004393 3.7e-139 499.6 693 47.3
Cpa.g.sc151.5 Carica papaya HOM05D003812 ORTHO05D004393 4.8e-139 499.2 660 45.2
TWI63G1503 Tripterygium wilfordii HOM05D003812 ORTHO05D004393 3.2e-135 486.5 667 45.3
Prupe.7G062100 Prunus persica HOM05D003812 ORTHO05D004393 4.2e-135 486.1 679 43.3
arahy.Tifrunner.gnm1.ann1.SFVM41 Arachis hypogaea HOM05D003812 ORTHO05D004393 4.6e-134 482.6 650 44.8
COL.COLO4_16818 Corchorus olitorius HOM05D003812 ORTHO05D004393 6.1e-134 482.3 702 44.2
Gohir.D08G113808 Gossypium hirsutum HOM05D003812 ORTHO05D004393 7.9e-134 481.9 659 46.7
Gorai.004G122600 Gossypium raimondii HOM05D003812 ORTHO05D004393 7.9e-134 481.9 659 46.4
CAN.G164.18 Capsicum annuum HOM05D003812 ORTHO05D004393 1.8e-133 480.7 669 45.3
Cfa008512 Carpinus fangiana HOM05D003812 ORTHO05D004393 6.7e-133 478.8 663 43.1
arahy.Tifrunner.gnm1.ann1.U9V8RX Arachis hypogaea HOM05D003812 ORTHO05D004393 8.8e-133 478.4 656 44.5
Phvul.002G113100 Phaseolus vulgaris HOM05D003812 ORTHO05D004393 8.8e-133 478.4 657 44.7
QL10p064313 Quercus lobata HOM05D003812 ORTHO05D004393 2.5e-132 476.9 661 43.9
PSO170G6215 Papaver somniferum HOM05D003812 ORTHO05D004393 2.2e-131 473.8 675 46.7
Aqoxy4G02750 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 3.7e-131 473.0 695 45.0
unitig_37.g12590 Utricularia gibba HOM05D003812 ORTHO05D004393 8.2e-131 471.9 657 44.1
Gohir.A08G102525 Gossypium hirsutum HOM05D003812 ORTHO05D004393 1.4e-130 471.1 665 44.8
Aqoxy7G02949 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 2.4e-130 470.3 701 45.1
CANSAT54G2113 Cannabis sativa HOM05D003812 ORTHO05D004393 3.1e-130 469.9 669 45.9
Lj2g0003816 Lotus japonicus HOM05D003812 ORTHO05D004393 5.3e-130 469.2 658 45.4
ECA246G4500 Erigeron canadensis HOM05D003812 ORTHO05D004393 5.9e-129 465.7 664 42.6
Lj2g0024194 Lotus japonicus HOM05D003812 ORTHO05D004393 7.7e-129 465.3 658 45.3
VMungo1215G0546 Vigna mungo HOM05D003812 ORTHO05D004393 2.9e-128 463.4 658 43.2
Manes.01G010200 Manihot esculenta HOM05D003812 ORTHO05D004393 3.8e-128 463.0 682 44.1
Nitab4.5_0010162g0010 Nicotiana tabacum HOM05D003812 ORTHO05D004393 2.5e-127 460.3 534 48.9
Sc25g0002340 Simmondsia chinensis HOM05D003812 ORTHO05D004393 2.5e-127 460.3 579 46.5
FvH4_1g00230 Fragaria vesca HOM05D003812 ORTHO05D004393 7.2e-127 458.8 670 41.3
Ca_17095_v3 Cicer arietinum L. HOM05D003812 ORTHO05D004393 3.0e-125 453.4 673 44.3
Sabra17G0008000 Salix brachista HOM05D003812 ORTHO05D004393 2.0e-124 450.7 673 41.9
PGR142G2470 Punica granatum HOM05D003812 ORTHO05D004393 2.8e-123 446.8 671 44.1
Solyc12g011180.3 Solanum lycopersicum HOM05D003812 ORTHO05D004393 4.8e-123 446.0 533 47.8
THA.LOC104814949 Tarenaya hassleriana HOM05D003812 ORTHO05D004393 2.4e-122 443.7 669 40.1
FvH4_4g37371 Fragaria vesca HOM05D003812 ORTHO05D004393 4.1e-122 443.0 687 40.0
arahy.Tifrunner.gnm1.ann1.B1HR4A Arachis hypogaea HOM05D003812 ORTHO05D004393 1.2e-121 441.4 666 45.8
arahy.Tifrunner.gnm1.ann1.CNXN93 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.2e-121 441.4 666 45.8
Psat3g143480 Pisum sativum HOM05D003812 ORTHO05D004393 1.2e-121 441.4 659 44.5
Potri.017G007200 Populus trichocarpa HOM05D003812 ORTHO05D004393 1.5e-121 441.0 668 41.2
Glyma.11G082800 Glycine max HOM05D003812 ORTHO05D004393 2.0e-121 440.7 672 43.9
Carub.0006s2228 Capsella rubella HOM05D003812 ORTHO05D004393 2.6e-121 440.3 646 41.2
Nitab4.5_0003520g0020 Nicotiana tabacum HOM05D003812 ORTHO05D004393 1.3e-120 438.0 549 47.2
Peaxi162Scf00463g00428 Petunia axillaris HOM05D003812 ORTHO05D004393 6.5e-120 435.6 620 43.7
TPR.G11261 Trifolium pratense HOM05D003812 ORTHO05D004393 4.2e-119 433.0 663 41.9
Medtr7g059160 Medicago truncatula HOM05D003812 ORTHO05D004393 5.5e-119 432.6 658 44.4
AT5G24450 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 9.4e-119 431.8 669 39.2
AT3G49410 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 1.2e-118 431.4 653 40.6
CARHR188960 Cardamine hirsuta HOM05D003812 ORTHO05D004393 1.2e-118 431.4 653 40.3
TPR.G23263 Trifolium pratense HOM05D003812 ORTHO05D004393 2.7e-118 430.3 663 41.9
BcaB07g29910 Brassica carinata HOM05D003812 ORTHO05D004393 4.7e-118 429.5 658 40.7
Thhalv10003925m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 6.1e-118 429.1 650 41.5
Sp2g22880 Schrenkiella parvula HOM05D003812 ORTHO05D004393 1.0e-117 428.3 654 42.2
Lj4C178G3 Lonicera japonica HOM05D003812 ORTHO05D004393 3.0e-117 426.8 705 40.3
ClCG09G014660 Citrullus lanatus HOM05D003812 ORTHO05D004393 8.8e-117 425.2 656 40.1
MELO3C026683.2 Cucumis melo HOM05D003812 ORTHO05D004393 1.5e-116 424.5 658 41.0
C01p30850 Brassica napus HOM05D003812 ORTHO05D004393 3.3e-116 423.3 652 39.4
BolC1t03017H Brassica oleracea HOM05D003812 ORTHO05D004393 3.3e-116 423.3 652 39.6
Sp5g12660 Schrenkiella parvula HOM05D003812 ORTHO05D004393 5.7e-116 422.5 654 41.3
Thhalv10010256m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 9.7e-116 421.8 651 40.6
AL6G36030 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 1.3e-115 421.4 651 41.2
Aa31LG11G3700 Aethionema arabicum HOM05D003812 ORTHO05D004393 4.8e-115 419.5 657 40.2
CsaV3_5G037130 Cucumis sativus L. HOM05D003812 ORTHO05D004393 4.8e-115 419.5 657 40.3
AL5G29170 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 1.1e-114 418.3 655 40.2
BraA02t09001Z Brassica rapa HOM05D003812 ORTHO05D004393 2.0e-113 414.1 651 40.9
CARHR158380 Cardamine hirsuta HOM05D003812 ORTHO05D004393 2.0e-113 414.1 651 38.9
Sed0027703 Sechium edule HOM05D003812 ORTHO05D004393 2.9e-112 410.2 649 40.1
A02p40330 Brassica napus HOM05D003812 ORTHO05D004393 5.0e-112 409.5 653 41.0
BraA01t02385Z Brassica rapa HOM05D003812 ORTHO05D004393 1.1e-111 408.3 652 38.3
FAN26G2119 Fragaria x ananassa HOM05D003812 ORTHO05D004393 1.1e-111 408.3 670 39.3
A01p24730 Brassica napus HOM05D003812 ORTHO05D004393 1.5e-111 407.9 652 38.2
BolC2t12085H Brassica oleracea HOM05D003812 ORTHO05D004393 1.5e-111 407.9 653 40.6
BcaC03g17974 Brassica carinata HOM05D003812 ORTHO05D004393 5.5e-111 406.0 658 40.3
Nn1g08169 Nelumbo nucifera HOM05D003812 ORTHO05D004393 1.4e-109 401.4 504 47.2
C02p60290 Brassica napus HOM05D003812 ORTHO05D004393 2.6e-108 397.1 652 40.2
BcaC09g49951 Brassica carinata HOM05D003812 ORTHO05D004393 7.0e-106 389.0 652 37.6
Potri.007G145000 Populus trichocarpa HOM05D003812 ORTHO05D004393 9.1e-106 388.7 559 41.7
FAN17G2490 Fragaria x ananassa HOM05D004444 ORTHO05D005246 2.0e-105 387.5 570 40.7
BcaB05g23118 Brassica carinata HOM05D003812 ORTHO05D004393 2.7e-105 387.1 652 37.3
FAN07G2723 Fragaria x ananassa HOM05D003812 ORTHO05D004393 7.7e-105 385.6 616 39.3
FAN07G0162 Fragaria x ananassa HOM05D004444 ORTHO05D005246 2.5e-103 380.6 570 40.2
vmacro06691 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 6.8e-101 372.5 537 43.6
CiPaw.01G201400 Carya illinoinensis HOM05D003812 ORTHO05D004393 7.0e-98 362.5 502 45.0
BcaC03g17970 Brassica carinata HOM05D003812 ORTHO05D004393 1.0e-93 348.6 652 36.3
HPP92_018576 Vanilla planifolia HOM05D003812 ORTHO05D004393 2.6e-92 344.0 674 35.9
Cc00_g24630 Coffea canephora HOM05D003812 ORTHO05D004393 4.9e-91 339.7 417 48.7
EL10Ac3g06164 Beta vulgaris HOM05D003812 ORTHO05D004393 3.2e-90 337.0 655 38.6
AUR62023711 Chenopodium quinoa HOM05D003812 ORTHO05D004393 5.9e-89 332.8 567 39.3
CDE05G0093 Ceratophyllum demersum HOM05D003812 ORTHO05D004393 1.4e-85 321.6 713 36.6
Nitab4.5_0000160g0140 Nicotiana tabacum HOM05D003812 ORTHO05D004393 2.3e-85 320.9 416 46.2
BcaB07g31049 Brassica carinata HOM05D003812 ORTHO05D004393 6.8e-85 319.3 415 41.2
Zm00001eb420200 Zea mays HOM05D003812 ORTHO05D004393 3.2e-82 310.5 663 34.8
Aa31LG4G17960 Aethionema arabicum HOM05D003812 ORTHO05D004393 2.7e-81 307.4 661 34.9
RcHm_v2.0_Chr2g0084521 Rosa chinensis HOM05D003812 ORTHO05D004393 1.0e-80 305.4 339 49.0
AUR62002481 Chenopodium quinoa HOM05D003812 ORTHO05D004393 3.6e-78 297.0 256 57.8
MBI16_g29049_MAGBIO Magnolia biondii HOM05D003812 ORTHO05D004393 3.6e-78 297.0 544 41.9
FAN23G1808 Fragaria x ananassa HOM05D003812 ORTHO05D004393 8.9e-77 292.4 341 46.9
SMO367G0920 Selaginella moellendorffii HOM05D003812 ORTHO05D004393 1.7e-75 288.1 561 34.6
Mapoly0019s0182 Marchantia polymorpha HOM05D003812 ORTHO05D004393 1.2e-73 282.0 531 35.6
Pp3c16_3240 Physcomitrium patens HOM05D003812 ORTHO05D004393 1.2e-70 271.9 726 30.9
Ah.13g073180 Amaranthus hybridus HOM05D003812 ORTHO05D004393 6.4e-67 259.6 253 51.4
Lalb_Chr05g0212031 Lupinus albus HOM05D003812 ORTHO05D004393 2.1e-65 254.6 308 49.7
Oeu022463.3 Olea europaea HOM05D003812 ORTHO05D004393 2.3e-64 251.1 383 46.2
AagrBONN_evm.TU.Sc2ySwM_344.3654 Anthoceros agrestis HOM05D003812 ORTHO05D004393 3.0e-64 250.8 568 32.2
Hma1.2p1_0381F.1_g140050 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 2.0e-60 238.0 243 56.4
Carub.0005s1565 Capsella rubella HOM05D003812 ORTHO05D004393 5.4e-58 229.9 279 48.0
TAR636G0947 Trochodendron aralioides HOM05D003812 ORTHO05D004393 1.1e-55 222.2 244 53.7
Haze_11132 Corylus avellana HOM05D003812 ORTHO05D004393 6.2e-54 216.5 334 41.3
Hma1.2p1_0381F.1_g140060 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 3.1e-53 214.2 158 63.9
Oeu064436.1 Olea europaea HOM05D003812 ORTHO05D004393 2.2e-51 208.0 185 58.4
Cc06_g19240 Coffea canephora HOM05D003812 ORTHO05D004393 2.9e-51 207.6 137 69.3
CSS0023461 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 6.4e-51 206.5 192 55.7
Sc13g0007550 Simmondsia chinensis HOM05D003812 ORTHO05D004393 1.4e-50 205.3 258 46.9
Cc06_g19250 Coffea canephora HOM05D003812 ORTHO05D004393 1.9e-50 204.9 248 49.6
RcHm_v2.0_Chr2g0084531 Rosa chinensis HOM05D003812 ORTHO05D004393 2.4e-50 204.5 243 47.7
CSS0048962 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 7.1e-50 203.0 192 55.2
CSS0001518 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.2e-49 202.2 192 54.7
CSS0002491 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.7e-48 198.4 192 54.7
CSS0006626 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.7e-48 198.4 192 54.7
CSS0008525 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.7e-48 198.4 192 54.7
Hund12300 Selenicereus undatus HOM05D003812 ORTHO05D004393 6.6e-48 196.4 248 48.0
BolC2t12088H Brassica oleracea HOM05D003812 ORTHO05D004393 1.6e-46 191.8 401 33.2
Lalb_Chr05g0212041 Lupinus albus HOM05D003812 ORTHO05D004393 1.6e-46 191.8 244 45.9
CSS0030669 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 4.8e-46 190.3 191 52.9
HanXRQChr17g0553321 Helianthus annuus HOM05D003812 ORTHO05D004393 6.9e-45 186.4 231 54.1
TAR636G0254 Trochodendron aralioides HOM05D003812 ORTHO05D004393 5.8e-44 183.3 260 50.0
Carub.0005s1566 Capsella rubella HOM05D003812 ORTHO05D004393 1.0e-40 172.6 235 41.3
BcaB01g00718 Brassica carinata HOM05D003812 ORTHO05D004393 1.3e-38 165.6 385 31.2
ATR0580G406 Amborella trichopoda HOM05D003812 ORTHO05D004393 2.0e-36 158.3 268 41.8
Ah.13g073190 Amaranthus hybridus HOM05D003812 ORTHO05D004393 5.5e-34 150.2 191 49.2
Nitab4.5_0001168g0120 Nicotiana tabacum HOM05D003812 ORTHO05D004393 5.5e-34 150.2 432 28.9
CSS0036967 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.9e-32 144.1 192 45.3
SEGI_23375 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 1.1e-29 136.0 193 43.5
VMungo0251G1870 Vigna mungo HOM05D000140 ORTHO05D004393 3.4e-28 131.0 224 38.8
Sc13g0007560 Simmondsia chinensis HOM05D003812 ORTHO05D004393 8.4e-27 126.3 125 52.0
Hund12301 Selenicereus undatus HOM05D003812 ORTHO05D004393 6.1e-25 120.2 231 42.4
ATR0580G030 Amborella trichopoda HOM05D003812 ORTHO05D004393 1.1e-23 115.9 243 33.7
arahy.Tifrunner.gnm1.ann1.C22IND Arachis hypogaea HOM05D003812 ORTHO05D004393 1.5e-23 115.5 98 57.1
arahy.Tifrunner.gnm1.ann1.NBB910 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.9e-23 115.2 104 55.8
arahy.Tifrunner.gnm1.ann1.WBRQ5K Arachis hypogaea HOM05D003812 ORTHO05D004393 4.3e-23 114.0 104 54.8
SHI01261 Sapria himalayana HOM05D003812 ORTHO05D004393 5.7e-23 113.6 93 60.2
CBR_g26464 Chara braunii HOM05D003812 ORTHO05D004393 2.4e-21 108.2 714 20.0
Nn1g08161 Nelumbo nucifera HOM05D003812 ORTHO05D004393 3.4e-20 104.4 184 45.1
VMungo1268G0001 Vigna mungo HOM05D003812 ORTHO05D004393 7.7e-20 103.2 204 36.3
arahy.Tifrunner.gnm1.ann1.05VQ85 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.7e-19 102.1 132 42.4
Haze_11133 Corylus avellana HOM05D003812 ORTHO05D004393 3.2e-18 97.8 158 37.3
Cc00_g35850 Coffea canephora HOM05D003812 ORTHO05D004393 2.5e-15 88.2 114 54.4
arahy.Tifrunner.gnm1.ann1.8MB3N8 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.7e-14 85.5 84 52.4
SEGI_01468 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 1.7e-14 85.5 71 53.5
Os01g0528000 Oryza sativa ssp. japonica HOM05D003812 ORTHO05D004393 3.7e-14 84.3 91 50.5
Hma1.2p1_0381F.1_g140070 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 5.3e-13 80.5 166 36.7
MBI16_g46635_MAGBIO Magnolia biondii HOM05D000963 ORTHO05D005131 6.9e-13 80.1 274 36.5
arahy.Tifrunner.gnm1.ann1.SF8VIF Arachis hypogaea HOM05D003812 ORTHO05D004393 1.2e-12 79.3 79 51.9
vmacro06690 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 2.5e-10 71.6 46 76.1
Cc06_g19280 Coffea canephora HOM05D003812 ORTHO05D004393 5.5e-10 70.5 102 46.1
Hund12275 Selenicereus undatus HOM05D003812 ORTHO05D004393 9.4e-10 69.7 194 37.1
PGSC0003DMG400007789 Solanum tuberosum HOM05D003812 ORTHO05D004393 1.3e-06 59.3 158 43.0
SEGI_03594 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 1.7e-06 58.9 232 29.7
vmacro06692 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 1.7e-06 58.9 82 48.8
Sc25g0002350 Simmondsia chinensis HOM05D003812 ORTHO05D004393 2.8e-06 58.2 50 60.0
FAN20G1426 Fragaria x ananassa HOM05D003812 ORTHO05D004393 8.2e-06 56.6 137 33.6


User provided reference genes

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