Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold12G06024 Striga asiatica HOM05D006256 ORTHO05D007833 7.5e-59 230.3 118 100.0
SGA_v2.0_scaffold222G42778 Striga asiatica HOM05D006256 ORTHO05D007833 2.4e-28 129.0 104 68.3
MSTRG.10713 Avicennia marina HOM05D006256 ORTHO05D007833 4.9e-26 121.3 115 57.4
SalBow1G2070 Salvia bowleyana HOM05D006256 ORTHO05D007833 2.7e-24 115.5 98 64.3
Migut.K00301 Erythranthe guttata HOM05D006256 ORTHO05D007833 3.9e-23 111.7 104 57.7
Oeu010284.1 Olea europaea HOM05D006256 ORTHO05D007833 7.3e-22 107.5 104 51.9
Migut.J01392 Erythranthe guttata HOM05D006256 ORTHO05D007833 6.9e-20 100.9 105 59.0
Nitab4.5_0006744g0050 Nicotiana tabacum HOM05D006256 ORTHO05D007833 1.0e-15 87.0 69 63.8
Nitab4.5_0001036g0150 Nicotiana tabacum HOM05D006256 ORTHO05D007833 3.9e-15 85.1 72 59.7
Cc06_g14490 Coffea canephora HOM05D006256 ORTHO05D007833 1.1e-14 83.6 102 51.0
vmacro06052 Vaccinium macrocarpon HOM05D006256 ORTHO05D007833 1.5e-14 83.2 82 54.9
Peaxi162Scf00563g00414 Petunia axillaris HOM05D006256 ORTHO05D007833 4.3e-14 81.6 72 61.1
Actinidia38660 Actinidia chinensis HOM05D006256 ORTHO05D007833 5.6e-14 81.3 104 46.2
Dinv42817 Davidia involucrata HOM05D006256 ORTHO05D007833 1.3e-13 80.1 103 49.5
Dinv43283 Davidia involucrata HOM05D006256 ORTHO05D007833 1.3e-13 80.1 103 49.5
Solyc07g006000.3 Solanum lycopersicum HOM05D006256 ORTHO05D007833 2.1e-13 79.3 72 58.3
Sopen07g002140 Solanum pennellii HOM05D006256 ORTHO05D007833 2.1e-13 79.3 72 58.3
PGSC0003DMG400011211 Solanum tuberosum HOM05D006256 ORTHO05D007833 2.1e-13 79.3 72 58.3
Manes.14G113600 Manihot esculenta HOM05D006256 ORTHO05D007833 6.2e-13 77.8 107 48.6
MD04G1052200 Malus domestica HOM05D006256 ORTHO05D007833 1.4e-12 76.6 101 46.5
Ciclev10009792m.g Citrus clementina HOM05D006256 ORTHO05D007833 2.4e-12 75.9 75 58.7
ECA234G3762 Erigeron canadensis HOM05D006256 ORTHO05D007833 2.4e-12 75.9 68 60.3
Hma1.2p1_1084F.1_g255300 Hydrangea macrophylla HOM05D006256 ORTHO05D007833 2.4e-12 75.9 105 44.8
Nn2g12458 Nelumbo nucifera HOM05D006256 ORTHO05D007833 3.1e-12 75.5 102 49.0
A09p56610 Brassica napus HOM05D006256 ORTHO05D007833 4.0e-12 75.1 105 45.7
BraA09t41052Z Brassica rapa HOM05D006256 ORTHO05D007833 4.0e-12 75.1 105 45.7
CSS0026373 Camellia sinensis var. sinensis HOM05D006256 ORTHO05D007833 4.0e-12 75.1 111 45.9
Eucgr.L01548 Eucalyptus grandis HOM05D006256 ORTHO05D007833 4.0e-12 75.1 107 46.7
Eucgr.C02515 Eucalyptus grandis HOM05D006256 ORTHO05D007833 5.3e-12 74.7 101 47.5
Prupe.1G102100 Prunus persica HOM05D006256 ORTHO05D007833 6.9e-12 74.3 74 59.5
EL10Ac8g18906 Beta vulgaris HOM05D006256 ORTHO05D007833 9.0e-12 73.9 103 46.6
BcaC07g40961 Brassica carinata HOM05D006256 ORTHO05D007833 1.2e-11 73.6 105 45.7
CANSAT11G0095 Cannabis sativa HOM05D006256 ORTHO05D007833 1.2e-11 73.6 89 49.4
ClCG06G012650 Citrullus lanatus HOM05D006256 ORTHO05D007833 1.2e-11 73.6 107 45.8
A04p18400 Brassica napus HOM05D006256 ORTHO05D007833 1.5e-11 73.2 104 42.3
BraA04t17452Z Brassica rapa HOM05D006256 ORTHO05D007833 1.5e-11 73.2 104 42.3
Sed0025015 Sechium edule HOM05D006256 ORTHO05D007833 1.5e-11 73.2 107 45.8
Hund08959 Selenicereus undatus HOM05D006256 ORTHO05D007833 1.5e-11 73.2 92 48.9
VMungo1215G1943 Vigna mungo HOM05D006256 ORTHO05D007833 1.5e-11 73.2 77 57.1
Aa31LG7G12680 Aethionema arabicum HOM05D006256 ORTHO05D007833 2.0e-11 72.8 83 49.4
TWI32G1056 Tripterygium wilfordii HOM05D006256 ORTHO05D007833 2.0e-11 72.8 102 47.1
Atru.chr7.353 Acer truncatum HOM05D006256 ORTHO05D007833 2.6e-11 72.4 109 48.6
CSS0035436 Camellia sinensis var. sinensis HOM05D006256 ORTHO05D007833 2.6e-11 72.4 111 46.8
Phvul.003G153700 Phaseolus vulgaris HOM05D006256 ORTHO05D007833 2.6e-11 72.4 98 51.0
PGR102G0560 Punica granatum HOM05D006256 ORTHO05D007833 2.6e-11 72.4 108 48.1
unitig_748.g7194 Utricularia gibba HOM05D006256 ORTHO05D007833 2.6e-11 72.4 91 48.4
Sp4g02990 Schrenkiella parvula HOM05D006256 ORTHO05D007833 3.4e-11 72.0 95 48.4
MELO3C010199.2 Cucumis melo HOM05D006256 ORTHO05D007833 4.5e-11 71.6 107 46.7
TAR383G0166 Trochodendron aralioides HOM05D006256 ORTHO05D007833 5.8e-11 71.2 72 55.6
Carub.0004s0326 Capsella rubella HOM05D006256 ORTHO05D007833 7.6e-11 70.9 102 41.2
HanXRQChr12g0357751 Helianthus annuus HOM05D006256 ORTHO05D007833 7.6e-11 70.9 73 53.4
TAR626G0939 Trochodendron aralioides HOM05D006256 ORTHO05D007833 7.6e-11 70.9 89 48.3
AL4G14180 Arabidopsis lyrata HOM05D006256 ORTHO05D007833 9.9e-11 70.5 106 41.5
BolC4t26923H Brassica oleracea HOM05D006256 ORTHO05D007833 9.9e-11 70.5 104 41.3
Thhalv10000362m.g Eutrema salsugineum HOM05D006256 ORTHO05D007833 9.9e-11 70.5 101 44.6
Potri.018G102700 Populus trichocarpa HOM05D006256 ORTHO05D007833 9.9e-11 70.5 74 59.5
Haze_19139 Corylus avellana HOM05D006256 ORTHO05D007833 1.3e-10 70.1 93 47.3
Glyma.02G206700 Glycine max HOM05D006256 ORTHO05D007833 1.3e-10 70.1 79 50.6
Lsat_1_v5_gn_5_88481 Lactuca sativa HOM05D006256 ORTHO05D007833 1.3e-10 70.1 73 54.8
C04p53670 Brassica napus HOM05D006256 ORTHO05D007833 1.7e-10 69.7 104 40.4
Cfa020783 Carpinus fangiana HOM05D006256 ORTHO05D007833 1.7e-10 69.7 95 46.3
AUR62028378 Chenopodium quinoa HOM05D006256 ORTHO05D007833 1.7e-10 69.7 92 47.8
AT2G24090 Arabidopsis thaliana HOM05D006256 ORTHO05D007833 2.2e-10 69.3 106 41.5
AUR62025373 Chenopodium quinoa HOM05D006256 ORTHO05D007833 2.2e-10 69.3 85 50.6
QL02p094215 Quercus lobata HOM05D006256 ORTHO05D007833 2.2e-10 69.3 109 43.1
Cpa.g.sc199.16 Carica papaya HOM05D006256 ORTHO05D007833 2.9e-10 68.9 74 54.1
MBI15_g35737_MAGBIO Magnolia biondii HOM05D006256 ORTHO05D007833 2.9e-10 68.9 72 55.6
MBI15_g42789_MAGBIO Magnolia biondii HOM05D006256 ORTHO05D007833 2.9e-10 68.9 73 54.8
CiPaw.16G106600 Carya illinoinensis HOM05D006256 ORTHO05D007833 3.8e-10 68.6 90 48.9
C08p39560 Brassica napus HOM05D006256 ORTHO05D007833 4.9e-10 68.2 89 47.2
BolC8t51529H Brassica oleracea HOM05D006256 ORTHO05D007833 4.9e-10 68.2 89 47.2
CiPaw.15G164300 Carya illinoinensis HOM05D006256 ORTHO05D007833 4.9e-10 68.2 106 44.3
Actinidia33300 Actinidia chinensis HOM05D006256 ORTHO05D007833 6.4e-10 67.8 98 44.9
CsaV3_1G029200 Cucumis sativus L. HOM05D006256 ORTHO05D007833 6.4e-10 67.8 107 45.8
Medtr4g130300 Medicago truncatula HOM05D006256 ORTHO05D007833 6.4e-10 67.8 103 47.6
Psat7g006560 Pisum sativum HOM05D006256 ORTHO05D007833 6.4e-10 67.8 102 49.0
Aqoxy7G03320 Aquilegia oxysepala HOM05D006256 ORTHO05D007833 8.4e-10 67.4 76 51.3
COL.COLO4_05401 Corchorus olitorius HOM05D006256 ORTHO05D007833 8.4e-10 67.4 77 53.2
CAN.G1190.22 Capsicum annuum HOM05D006256 ORTHO05D007833 1.1e-09 67.0 102 43.1
CARHR118260 Cardamine hirsuta HOM05D006256 ORTHO05D007833 1.4e-09 66.6 66 53.0
Lj4g0007171 Lotus japonicus HOM05D006256 ORTHO05D007833 1.9e-09 66.2 95 45.3
SEGI_40166 Sequoiadendron giganteum HOM05D006256 ORTHO05D007833 1.9e-09 66.2 78 51.3
FvH4_4g09690 Fragaria vesca HOM05D006256 ORTHO05D007833 2.4e-09 65.9 98 45.9
Glyma.17G071200 Glycine max HOM05D006256 ORTHO05D007833 2.4e-09 65.9 85 48.2
Ah.09g228670 Amaranthus hybridus HOM05D006256 ORTHO05D007833 3.2e-09 65.5 76 53.9
RcHm_v2.0_Chr4g0405501 Rosa chinensis HOM05D006256 ORTHO05D007833 3.2e-09 65.5 97 47.4
HanXRQChr10g0307761 Helianthus annuus HOM05D006256 ORTHO05D007833 4.2e-09 65.1 68 55.9
Duzib187G1001 Durio zibethinus HOM05D006256 ORTHO05D007833 5.5e-09 64.7 77 51.9
Sabra18G0088200 Salix brachista HOM05D006256 ORTHO05D007833 5.5e-09 64.7 73 57.5
CDE05G2121 Ceratophyllum demersum HOM05D006256 ORTHO05D007833 7.1e-09 64.3 68 58.8
Thecc.09G154100 Theobroma cacao HOM05D006256 ORTHO05D007833 7.1e-09 64.3 77 50.6
TPR.G24835 Trifolium pratense HOM05D006256 ORTHO05D007833 7.1e-09 64.3 84 48.8
CDE02G1547 Ceratophyllum demersum HOM05D006256 ORTHO05D007833 9.3e-09 63.9 68 58.8
FAN07G0991 Fragaria x ananassa HOM05D006256 ORTHO05D007833 9.3e-09 63.9 98 44.9
PSO170G3639 Papaver somniferum HOM05D006256 ORTHO05D007833 9.3e-09 63.9 90 51.1
HPP92_010352 Vanilla planifolia HOM05D006256 ORTHO05D007833 9.3e-09 63.9 99 45.5
THA.LOC104803911 Tarenaya hassleriana HOM05D006256 ORTHO05D007833 1.6e-08 63.2 82 45.1
FAN17G2907 Fragaria x ananassa HOM05D006256 ORTHO05D007833 2.7e-08 62.4 68 54.4
FAN17G2911 Fragaria x ananassa HOM05D006256 ORTHO05D007833 2.7e-08 62.4 68 54.4
arahy.Tifrunner.gnm1.ann1.RJ4A7B Arachis hypogaea HOM05D006256 ORTHO05D007833 4.6e-08 61.6 37 83.8
Gohir.D08G098900 Gossypium hirsutum HOM05D006256 ORTHO05D007833 4.6e-08 61.6 77 50.6
arahy.Tifrunner.gnm1.ann1.6DRS7R Arachis hypogaea HOM05D006256 ORTHO05D007833 6.0e-08 61.2 113 38.9
ATR0580G126 Amborella trichopoda HOM05D006256 ORTHO05D007833 7.9e-08 60.8 69 55.1
FAN22G0392 Fragaria x ananassa HOM05D006256 ORTHO05D007833 7.9e-08 60.8 99 44.4
Lalb_Chr13g0300681 Lupinus albus HOM05D006256 ORTHO05D007833 7.9e-08 60.8 104 46.2
PSO063G2398 Papaver somniferum HOM05D006256 ORTHO05D007833 7.9e-08 60.8 71 52.1
Gorai.004G106500 Gossypium raimondii HOM05D006256 ORTHO05D007833 1.0e-07 60.5 77 50.6
CSS0023303 Camellia sinensis var. sinensis HOM05D006256 ORTHO05D007833 3.0e-07 58.9 35 88.6
CBR_g46223 Chara braunii HOM05D006256 ORTHO05D007833 3.0e-07 58.9 47 66.0
Gohir.A08G087800 Gossypium hirsutum HOM05D006256 ORTHO05D007833 3.0e-07 58.9 74 50.0
Gohir.A04G058552 Gossypium hirsutum HOM05D006256 ORTHO05D007833 5.1e-07 58.2 46 65.2
Os06g0647100 Oryza sativa ssp. japonica HOM05D006256 ORTHO05D007833 3.3e-06 55.5 63 55.6


User provided reference genes

Program Settings