Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold12G06006 Striga asiatica HOM05D003524 ORTHO05D003988 9.2e-60 233.4 122 100.0
Migut.K00320 Erythranthe guttata HOM05D003524 ORTHO05D003988 6.2e-32 141.0 124 62.9
Oeu021302.1 Olea europaea HOM05D003524 ORTHO05D003988 1.9e-25 119.4 124 58.1
SalBow1G7165 Salvia bowleyana HOM05D003524 ORTHO05D003988 2.8e-24 115.5 120 56.7
Nitab4.5_0006523g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 2.4e-23 112.5 127 51.2
MSTRG.6141 Avicennia marina HOM05D003524 ORTHO05D003988 3.8e-21 105.1 122 51.6
Sopen07g001680 Solanum pennellii HOM05D003524 ORTHO05D003988 6.6e-18 94.4 129 45.0
Cc06_g14890 Coffea canephora HOM05D003524 ORTHO05D003988 1.5e-17 93.2 126 49.2
Glyma.02G204400 Glycine max HOM05D003524 ORTHO05D003988 9.6e-17 90.5 72 58.3
PGSC0003DMG401011138 Solanum tuberosum HOM05D003524 ORTHO05D003988 1.3e-16 90.1 129 42.6
Phvul.003G155700 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 1.1e-15 87.0 91 50.5
MELO3C010217.2 Cucumis melo HOM05D003524 ORTHO05D003988 1.4e-15 86.7 73 58.9
ClCG06G012430 Citrullus lanatus HOM05D003524 ORTHO05D003988 2.4e-15 85.9 100 49.0
MD15G1144300 Malus domestica HOM05D003524 ORTHO05D003988 2.4e-15 85.9 73 58.9
Psat0s2403g0200 Pisum sativum HOM05D003524 ORTHO05D003988 5.3e-15 84.7 67 58.2
Sed0002480 Sechium edule HOM05D003524 ORTHO05D003988 1.2e-14 83.6 73 57.5
Ca_21130_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 1.5e-14 83.2 73 56.2
Ca_28168_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 1.5e-14 83.2 73 56.2
Ciclev10010389m.g Citrus clementina HOM05D003524 ORTHO05D003988 1.5e-14 83.2 69 60.9
Medtr4g130810 Medicago truncatula HOM05D003524 ORTHO05D003988 2.0e-14 82.8 66 59.1
arahy.Tifrunner.gnm1.ann1.36ASSY Arachis hypogaea HOM05D003524 ORTHO05D003988 5.8e-14 81.3 110 47.3
arahy.Tifrunner.gnm1.ann1.YXTM1W Arachis hypogaea HOM05D003524 ORTHO05D003988 9.9e-14 80.5 120 42.5
TPR.G24858 Trifolium pratense HOM05D003524 ORTHO05D003988 9.9e-14 80.5 80 52.5
CSS0041430 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 1.7e-13 79.7 99 48.5
CiPaw.03G202100 Carya illinoinensis HOM05D003524 ORTHO05D003988 2.2e-13 79.3 73 54.8
Prupe.7G263500 Prunus persica HOM05D003524 ORTHO05D003988 2.2e-13 79.3 81 54.3
TAR383G0003 Trochodendron aralioides HOM05D003524 ORTHO05D003988 2.2e-13 79.3 82 54.9
Dinv42850 Davidia involucrata HOM05D003524 ORTHO05D003988 2.9e-13 79.0 113 45.1
Dinv43250 Davidia involucrata HOM05D003524 ORTHO05D003988 2.9e-13 79.0 113 45.1
Lalb_Chr08g0234291 Lupinus albus HOM05D003524 ORTHO05D003988 2.9e-13 79.0 70 55.7
Rhsim03G0257300 Rhododendron simsii HOM05D000122 ORTHO05D000139 6.4e-13 77.8 73 56.2
Cpa.g.sc46.161 Carica papaya HOM05D000332 ORTHO05D000268 8.4e-13 77.4 72 55.6
Hma1.2p1_0028F.1_g017600 Hydrangea macrophylla HOM05D003524 ORTHO05D003988 1.4e-12 76.6 65 58.5
Haze_19201 Corylus avellana HOM05D003524 ORTHO05D003988 2.4e-12 75.9 73 52.1
Lalb_Chr11g0072661 Lupinus albus HOM05D003524 ORTHO05D003988 2.4e-12 75.9 70 57.1
vmacro06076 Vaccinium macrocarpon HOM05D003524 ORTHO05D003988 2.4e-12 75.9 88 48.9
CSS0001588 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 4.2e-12 75.1 67 61.2
Cfa020822 Carpinus fangiana HOM05D003524 ORTHO05D003988 4.2e-12 75.1 71 52.1
GSVIVG01035971001 Vitis vinifera HOM05D003524 ORTHO05D003988 7.1e-12 74.3 90 50.0
AUR62029823 Chenopodium quinoa HOM05D003524 ORTHO05D003988 9.3e-12 73.9 70 54.3
FAN23G1251 Fragaria x ananassa HOM05D003524 ORTHO05D003988 9.3e-12 73.9 70 52.9
FAN26G0389 Fragaria x ananassa HOM05D003524 ORTHO05D003988 9.3e-12 73.9 70 52.9
Potri.006G183800 Populus trichocarpa HOM05D003524 ORTHO05D003988 1.2e-11 73.6 72 51.4
Thecc.09G029400 Theobroma cacao HOM05D003524 ORTHO05D003988 1.2e-11 73.6 67 58.2
Actinidia22287 Actinidia chinensis HOM05D000091 ORTHO05D003988 1.6e-11 73.2 64 60.9
Sc08g0005190 Simmondsia chinensis HOM05D003524 ORTHO05D003988 1.6e-11 73.2 83 51.8
Sc08g0005200 Simmondsia chinensis HOM05D003524 ORTHO05D003988 1.6e-11 73.2 83 51.8
COL.COLO4_18813 Corchorus olitorius HOM05D003524 ORTHO05D003988 2.1e-11 72.8 67 55.2
Atru.chr7.178 Acer truncatum HOM05D003524 ORTHO05D003988 2.7e-11 72.4 63 57.1
Lsat_1_v5_gn_7_49941 Lactuca sativa HOM05D003524 ORTHO05D003988 2.7e-11 72.4 73 58.9
SHI21076 Sapria himalayana HOM05D003524 ORTHO05D003988 2.7e-11 72.4 81 51.9
TAR625G1231 Trochodendron aralioides HOM05D003524 ORTHO05D003988 3.5e-11 72.0 73 53.4
Prupe.1G394000 Prunus persica HOM05D003524 ORTHO05D003988 4.6e-11 71.6 87 50.6
FAN28G2066 Fragaria x ananassa HOM05D003524 ORTHO05D003988 6.0e-11 71.2 85 48.2
Sabra06G0139800 Salix brachista HOM05D003524 ORTHO05D003988 6.0e-11 71.2 72 51.4
CANSAT25G3000 Cannabis sativa HOM05D003524 ORTHO05D003988 1.8e-10 69.7 82 48.8
EL10Ac4g10348 Beta vulgaris HOM05D003524 ORTHO05D003988 3.0e-10 68.9 80 51.2
Cc08_g07080 Coffea canephora HOM05D003524 ORTHO05D003988 3.0e-10 68.9 67 59.7
Cc08_g07090 Coffea canephora HOM05D003524 ORTHO05D003988 3.0e-10 68.9 67 59.7
Cc08_g07120 Coffea canephora HOM05D003524 ORTHO05D003988 3.0e-10 68.9 67 58.2
Potri.018G106300 Populus trichocarpa HOM05D003524 ORTHO05D003988 3.0e-10 68.9 72 48.6
AUR62024806 Chenopodium quinoa HOM05D003524 ORTHO05D003988 3.9e-10 68.6 81 46.9
Nitab4.5_0002011g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 5.1e-10 68.2 67 58.2
Potri.018G018300 Populus trichocarpa HOM05D003524 ORTHO05D003988 8.7e-10 67.4 80 48.8
CiPaw.07G230500 Carya illinoinensis HOM05D003524 ORTHO05D003988 1.5e-09 66.6 82 50.0
Cpa.g.sc136.44 Carica papaya HOM05D003524 ORTHO05D003988 1.9e-09 66.2 63 52.4
HanXRQChr09g0274741 Helianthus annuus HOM05D003524 ORTHO05D003988 1.9e-09 66.2 65 58.5
BcaC03g16382 Brassica carinata HOM05D003524 ORTHO05D003988 2.5e-09 65.9 70 54.3
C02p42080 Brassica napus HOM05D003524 ORTHO05D003988 2.5e-09 65.9 70 54.3
BolC2t10246H Brassica oleracea HOM05D003524 ORTHO05D003988 2.5e-09 65.9 70 54.3
Eucgr.L02917 Eucalyptus grandis HOM05D003524 ORTHO05D003988 2.5e-09 65.9 67 56.7
BcaC04g21087 Brassica carinata HOM05D003524 ORTHO05D003988 3.3e-09 65.5 70 54.3
C09p35850 Brassica napus HOM05D003524 ORTHO05D003988 3.3e-09 65.5 70 54.3
BolC9t56418H Brassica oleracea HOM05D003524 ORTHO05D003988 3.3e-09 65.5 70 54.3
Migut.A00356 Erythranthe guttata HOM05D003524 ORTHO05D003988 3.3e-09 65.5 82 47.6
Thhalv10029345m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 3.3e-09 65.5 70 54.3
FAN27G2394 Fragaria x ananassa HOM05D003524 ORTHO05D003988 3.3e-09 65.5 79 51.9
PSO339G2253 Papaver somniferum HOM05D003524 ORTHO05D003988 4.3e-09 65.1 82 46.3
A02p26460 Brassica napus HOM05D003524 ORTHO05D003988 5.6e-09 64.7 70 54.3
BraA02t07649Z Brassica rapa HOM05D003524 ORTHO05D003988 5.6e-09 64.7 70 54.3
Rhsim02G0212800 Rhododendron simsii HOM05D003524 ORTHO05D003988 5.6e-09 64.7 62 58.1
COL.COLO4_18953 Corchorus olitorius HOM05D003524 ORTHO05D003988 9.6e-09 63.9 67 53.7
MD15G1040800 Malus domestica HOM05D003524 ORTHO05D003988 9.6e-09 63.9 80 48.8
Manes.03G008400 Manihot esculenta HOM05D003524 ORTHO05D003988 9.6e-09 63.9 82 45.1
EL10Ac2g02500 Beta vulgaris HOM05D003524 ORTHO05D003988 1.3e-08 63.5 84 46.4
ECA240G1327 Erigeron canadensis HOM05D003524 ORTHO05D003988 1.3e-08 63.5 75 50.7
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 1.3e-08 63.5 65 55.4
MBI15_g18244_MAGBIO Magnolia biondii HOM05D003524 ORTHO05D003988 1.3e-08 63.5 89 42.7
Nn8g39910 Nelumbo nucifera HOM05D003524 ORTHO05D003988 1.3e-08 63.5 82 46.3
Sp6g06610 Schrenkiella parvula HOM05D003524 ORTHO05D003988 1.3e-08 63.5 70 52.9
SGA_v2.0_scaffold22G09905 Striga asiatica HOM05D003524 ORTHO05D003988 1.3e-08 63.5 62 54.8
BcaB05g23874 Brassica carinata HOM05D003524 ORTHO05D003988 2.1e-08 62.8 70 52.9
A09p28280 Brassica napus HOM05D003524 ORTHO05D003988 2.1e-08 62.8 70 51.4
BraA09t38397Z Brassica rapa HOM05D003524 ORTHO05D003988 2.1e-08 62.8 70 51.4
Carub.0006s2963 Capsella rubella HOM05D003524 ORTHO05D003988 2.1e-08 62.8 70 54.3
Gohir.A05G059800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 2.1e-08 62.8 80 46.2
QL02p093340 Quercus lobata HOM05D003524 ORTHO05D003988 2.1e-08 62.8 69 49.3
SalBow4G2912 Salvia bowleyana HOM05D003524 ORTHO05D003988 2.8e-08 62.4 78 46.2
Aqoxy7G03391 Aquilegia oxysepala HOM05D003524 ORTHO05D003988 3.7e-08 62.0 80 43.8
BcaB01g01557 Brassica carinata HOM05D003524 ORTHO05D003988 3.7e-08 62.0 70 51.4
Gohir.D05G062000 Gossypium hirsutum HOM05D003524 ORTHO05D003988 3.7e-08 62.0 82 45.1
Gorai.009G063100 Gossypium raimondii HOM05D003524 ORTHO05D003988 3.7e-08 62.0 82 45.1
TWI34G0563 Tripterygium wilfordii HOM05D003524 ORTHO05D003988 3.7e-08 62.0 82 47.6
Atru.chr7.2561 Acer truncatum HOM05D003524 ORTHO05D003988 6.2e-08 61.2 79 44.3
BcaB01g02731 Brassica carinata HOM05D003524 ORTHO05D003988 6.2e-08 61.2 70 51.4
A03p29240 Brassica napus HOM05D003524 ORTHO05D003988 6.2e-08 61.2 70 51.4
BraA03t12119Z Brassica rapa HOM05D003524 ORTHO05D003988 6.2e-08 61.2 70 51.4
ClCG05G016230 Citrullus lanatus HOM05D003524 ORTHO05D003988 6.2e-08 61.2 65 52.3
MELO3C016955.2 Cucumis melo HOM05D003524 ORTHO05D003988 6.2e-08 61.2 66 50.0
BcaC01g04654 Brassica carinata HOM05D003524 ORTHO05D003988 8.1e-08 60.8 70 51.4
C03p35250 Brassica napus HOM05D003524 ORTHO05D003988 8.1e-08 60.8 70 51.4
BolC3t15837H Brassica oleracea HOM05D003524 ORTHO05D003988 8.1e-08 60.8 70 51.4
Duzib168G0976 Durio zibethinus HOM05D003524 ORTHO05D003988 8.1e-08 60.8 79 48.1
ECA232G2703 Erigeron canadensis HOM05D003524 ORTHO05D003988 8.1e-08 60.8 65 53.8
Eucgr.C02607 Eucalyptus grandis HOM05D003524 ORTHO05D003988 8.1e-08 60.8 63 54.0
FAN20G2483 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.1e-07 60.5 79 49.4
Gohir.D05G054800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 1.1e-07 60.5 69 49.3
Peaxi162Scf00045g02028 Petunia axillaris HOM05D003524 ORTHO05D003988 1.1e-07 60.5 67 50.7
CAN.G353.11 Capsicum annuum HOM05D003524 ORTHO05D003988 1.4e-07 60.1 67 49.3
CARHR255710 Cardamine hirsuta HOM05D003524 ORTHO05D003988 1.4e-07 60.1 70 51.4
Lalb_Chr14g0361751 Lupinus albus HOM05D003524 ORTHO05D003988 3.1e-07 58.9 82 45.1
MD08G1056200 Malus domestica HOM05D003524 ORTHO05D003988 3.1e-07 58.9 80 45.0
AL6G44970 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 4.0e-07 58.5 70 50.0
CsaV3_4G036500 Cucumis sativus L. HOM05D003524 ORTHO05D003988 4.0e-07 58.5 66 48.5
Lj5g0009668 Lotus japonicus HOM05D003524 ORTHO05D003988 4.0e-07 58.5 70 47.1
Haze_21415 Corylus avellana HOM05D003524 ORTHO05D003988 5.3e-07 58.2 82 45.1
Phvul.001G041500 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 5.3e-07 58.2 67 49.3
Eucgr.C00343 Eucalyptus grandis HOM05D003524 ORTHO05D003988 6.9e-07 57.8 72 47.2
Oeu009646.1 Olea europaea HOM05D003524 ORTHO05D003988 6.9e-07 57.8 67 50.7
RcHm_v2.0_Chr6g0299391 Rosa chinensis HOM05D003524 ORTHO05D003988 6.9e-07 57.8 80 45.0
Solyc08g006800.3 Solanum lycopersicum HOM05D003524 ORTHO05D003988 6.9e-07 57.8 67 49.3
AL7G20150 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 1.5e-06 56.6 82 42.7
AT4G31830 Arabidopsis thaliana HOM05D003524 ORTHO05D003988 1.5e-06 56.6 82 42.7
CARHR239750 Cardamine hirsuta HOM05D003524 ORTHO05D003988 1.5e-06 56.6 82 42.7
Cfa013050 Carpinus fangiana HOM05D003524 ORTHO05D003988 1.5e-06 56.6 66 48.5
DCAR_022861 Daucus carota HOM05D003524 ORTHO05D003988 1.5e-06 56.6 81 43.2
Carub.0007s0872 Capsella rubella HOM05D003524 ORTHO05D003988 2.0e-06 56.2 82 41.5
Haze_21413 Corylus avellana HOM05D003524 ORTHO05D003988 2.0e-06 56.2 80 43.8
Lj1g0009607 Lotus japonicus HOM05D003524 ORTHO05D003988 2.6e-06 55.8 70 45.7
Lj5g0020130 Lotus japonicus HOM05D003524 ORTHO05D003988 2.6e-06 55.8 70 45.7
Manes.16G130000 Manihot esculenta HOM05D003524 ORTHO05D003988 2.6e-06 55.8 83 39.8
BcaC01g01054 Brassica carinata HOM05D003524 ORTHO05D003988 3.4e-06 55.5 62 50.0
A01p06450 Brassica napus HOM05D003524 ORTHO05D003988 3.4e-06 55.5 82 40.2
C01p07090 Brassica napus HOM05D003524 ORTHO05D003988 3.4e-06 55.5 82 40.2
BolC1t00701H Brassica oleracea HOM05D003524 ORTHO05D003988 3.4e-06 55.5 82 40.2
BraA01t00606Z Brassica rapa HOM05D003524 ORTHO05D003988 3.4e-06 55.5 82 40.2
PGSC0003DMG400026298 Solanum tuberosum HOM05D003524 ORTHO05D003988 3.4e-06 55.5 67 46.3
TPR.G38873 Trifolium pratense HOM05D003524 ORTHO05D003988 3.4e-06 55.5 100 40.0
Ah.12g060790 Amaranthus hybridus HOM05D003524 ORTHO05D003988 4.5e-06 55.1 71 43.7
arahy.Tifrunner.gnm1.ann1.PTAL7S Arachis hypogaea HOM05D003524 ORTHO05D003988 4.5e-06 55.1 65 46.2
arahy.Tifrunner.gnm1.ann1.ZW8IXI Arachis hypogaea HOM05D003524 ORTHO05D003988 4.5e-06 55.1 65 46.2
Psat6g025880 Pisum sativum HOM05D003524 ORTHO05D003988 4.5e-06 55.1 87 41.4
QL02p018819 Quercus lobata HOM05D003524 ORTHO05D003988 4.5e-06 55.1 78 44.9
Sopen08g002750 Solanum pennellii HOM05D003524 ORTHO05D003988 4.5e-06 55.1 67 46.3
BcaNung03115 Brassica carinata HOM05D003524 ORTHO05D003988 5.8e-06 54.7 75 42.7
Ca_13066_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 5.8e-06 54.7 89 40.4
Glyma.17G223300 Glycine max HOM05D003524 ORTHO05D003988 7.6e-06 54.3 67 46.3
BcaC01g01055 Brassica carinata HOM05D003524 ORTHO05D003988 1.0e-05 53.9 82 41.5
A08p18430 Brassica napus HOM05D003524 ORTHO05D003988 1.0e-05 53.9 82 41.5
C03p87500 Brassica napus HOM05D003524 ORTHO05D003988 1.0e-05 53.9 82 41.5
BolC3t21069H Brassica oleracea HOM05D003524 ORTHO05D003988 1.0e-05 53.9 82 41.5
Cpa.g.sc127.42 Carica papaya HOM05D003524 ORTHO05D003988 1.0e-05 53.9 66 45.5
Glyma.14G101900 Glycine max HOM05D003524 ORTHO05D003988 1.0e-05 53.9 67 44.8


User provided reference genes

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