Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold12G05990 Striga asiatica HOM05D001343 ORTHO05D007223 0.0e+00 1244.2 793 100.0
MSTRG.15594 Avicennia marina HOM05D001343 ORTHO05D007223 8.8e-212 741.1 796 64.2
SalBow5G5069 Salvia bowleyana HOM05D001343 ORTHO05D007223 2.6e-208 729.6 854 61.4
Dinv08526 Davidia involucrata HOM05D001343 ORTHO05D007223 1.2e-205 720.7 799 58.7
Actinidia17384 Actinidia chinensis HOM05D001343 ORTHO05D007223 3.5e-200 702.6 798 59.0
QL06p052741 Quercus lobata HOM05D001343 ORTHO05D007223 1.7e-191 673.7 835 57.8
Migut.L00734 Erythranthe guttata HOM05D001343 ORTHO05D007223 3.7e-186 656.0 802 60.2
CiPaw.07G004100 Carya illinoinensis HOM05D001343 ORTHO05D007223 4.9e-186 655.6 799 57.4
Atru.chr3.956 Acer truncatum HOM05D001343 ORTHO05D007223 8.3e-186 654.8 764 57.9
GSVIVG01003839001 Vitis vinifera HOM05D001343 ORTHO05D007223 1.8e-185 653.7 737 61.2
Duzib187G0329 Durio zibethinus HOM05D001343 ORTHO05D007223 4.5e-184 649.0 798 56.0
Hma1.2p1_0300F.1_g118160 Hydrangea macrophylla HOM05D001343 ORTHO05D007223 2.3e-183 646.7 811 54.9
MD15G1233300 Malus domestica HOM05D001343 ORTHO05D007223 1.1e-182 644.4 784 56.8
Duzib147G0638 Durio zibethinus HOM05D001343 ORTHO05D007223 4.3e-182 642.5 794 55.9
CANSAT25G1453 Cannabis sativa HOM05D001343 ORTHO05D007223 1.8e-180 637.1 748 61.4
CANSAT25G0854 Cannabis sativa HOM05D001343 ORTHO05D007223 5.2e-180 635.6 748 61.1
Sabra05G0082500 Salix brachista HOM05D001343 ORTHO05D007223 2.8e-173 613.2 801 57.2
Aqoxy5G01035 Aquilegia oxysepala HOM05D001343 ORTHO05D007223 6.2e-173 612.1 799 53.8
Peaxi162Scf01446g00025 Petunia axillaris HOM05D001343 ORTHO05D007223 8.0e-173 611.7 808 53.6
Potri.005G099800 Populus trichocarpa HOM05D001343 ORTHO05D007223 5.2e-172 609.0 801 57.2
Thecc.01G007100 Theobroma cacao HOM05D001343 ORTHO05D007223 1.2e-171 607.8 795 58.4
Haze_03675 Corylus avellana HOM05D001343 ORTHO05D007223 1.5e-171 607.4 812 53.3
HanXRQChr14g0442391 Helianthus annuus HOM05D001343 ORTHO05D007223 7.5e-171 605.1 799 56.9
Lalb_Chr05g0211921 Lupinus albus HOM05D001343 ORTHO05D007223 2.9e-170 603.2 796 54.6
Nitab4.5_0000702g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 6.4e-170 602.1 798 54.1
Phvul.002G114800 Phaseolus vulgaris HOM05D001343 ORTHO05D007223 6.4e-170 602.1 793 53.6
THA.LOC104826465 Tarenaya hassleriana HOM05D001343 ORTHO05D007223 1.9e-169 600.5 795 57.2
TAR381G1734 Trochodendron aralioides HOM05D001343 ORTHO05D007223 3.2e-169 599.7 800 54.0
CsaV3_3G000380 Cucumis sativus L. HOM05D001343 ORTHO05D007223 1.6e-168 597.4 802 54.0
Prupe.7G179600 Prunus persica HOM05D001343 ORTHO05D007223 7.8e-168 595.1 783 53.3
QL06p053829 Quercus lobata HOM05D001343 ORTHO05D007223 5.1e-167 592.4 801 56.4
Dinv40173 Davidia involucrata HOM05D001343 ORTHO05D007223 1.1e-166 591.3 512 65.2
TWI09G1271 Tripterygium wilfordii HOM05D001343 ORTHO05D007223 2.8e-165 586.6 801 53.2
vmacro20524 Vaccinium macrocarpon HOM05D001343 ORTHO05D007223 3.6e-165 586.3 761 58.6
MD02G1119300 Malus domestica HOM05D001343 ORTHO05D007223 4.7e-165 585.9 784 54.6
Sed0023593 Sechium edule HOM05D001343 ORTHO05D007223 2.3e-164 583.6 798 52.0
CAN.G890.76 Capsicum annuum HOM05D001343 ORTHO05D007223 1.7e-162 577.4 794 52.3
FAN23G1852 Fragaria x ananassa HOM05D001343 ORTHO05D007223 2.2e-162 577.0 754 55.0
ClCG10G000340 Citrullus lanatus HOM05D001343 ORTHO05D007223 5.1e-159 565.8 807 52.5
Gohir.D10G089000 Gossypium hirsutum HOM05D001343 ORTHO05D007223 1.1e-158 564.7 797 57.0
Gohir.A10G099100 Gossypium hirsutum HOM05D001343 ORTHO05D007223 3.3e-158 563.1 797 53.5
Gorai.011G097900 Gossypium raimondii HOM05D001343 ORTHO05D007223 4.3e-158 562.8 797 56.8
ECA238G2213 Erigeron canadensis HOM05D001343 ORTHO05D007223 9.6e-158 561.6 814 51.6
Hund03615 Selenicereus undatus HOM05D001343 ORTHO05D007223 1.6e-157 560.8 796 52.0
EL10Ac6g15468 Beta vulgaris HOM05D001343 ORTHO05D007223 2.8e-157 560.1 810 52.6
Cpa.g.sc55.186 Carica papaya HOM05D001343 ORTHO05D007223 2.4e-156 557.0 804 52.2
Actinidia22910 Actinidia chinensis HOM05D001343 ORTHO05D007223 1.5e-155 554.3 798 53.1
PGR083G0487 Punica granatum HOM05D001343 ORTHO05D007223 9.3e-153 545.0 793 49.8
AT5G66030 Arabidopsis thaliana HOM05D001343 ORTHO05D007223 7.8e-152 542.0 804 51.6
Ciclev10024922m.g Citrus clementina HOM05D001343 ORTHO05D007223 1.0e-151 541.6 792 50.8
TPR.G25095 Trifolium pratense HOM05D001343 ORTHO05D007223 1.3e-151 541.2 804 51.5
COL.COLO4_22537 Corchorus olitorius HOM05D001343 ORTHO05D007223 3.0e-151 540.0 796 53.4
FAN28G2189 Fragaria x ananassa HOM05D001343 ORTHO05D007223 6.6e-151 538.9 754 53.7
PSO210G1702 Papaver somniferum HOM05D001343 ORTHO05D007223 8.7e-151 538.5 775 50.5
ATR0661G538 Amborella trichopoda HOM05D001343 ORTHO05D007223 6.2e-149 532.3 753 52.3
Manes.02G112700 Manihot esculenta HOM05D001343 ORTHO05D007223 1.4e-148 531.2 799 53.2
CSS0043948 Camellia sinensis var. sinensis HOM05D001343 ORTHO05D007223 1.8e-148 530.8 789 50.7
Glyma.01G159900 Glycine max HOM05D001343 ORTHO05D007223 2.4e-148 530.4 801 50.4
FvH4_1g10521 Fragaria vesca HOM05D001343 ORTHO05D007223 2.6e-147 526.9 754 50.7
Atru.chr3.968 Acer truncatum HOM05D001343 ORTHO05D007223 9.9e-147 525.0 763 50.7
FAN19G1061 Fragaria x ananassa HOM05D001343 ORTHO05D007223 3.8e-146 523.1 754 50.1
BcaB04g20130 Brassica carinata HOM05D001343 ORTHO05D002008 6.4e-146 522.3 783 49.2
Ah.03g148390 Amaranthus hybridus HOM05D001343 ORTHO05D007223 1.9e-145 520.8 792 53.5
Solyc02g082840.3 Solanum lycopersicum HOM05D001343 ORTHO05D007223 2.1e-144 517.3 798 50.5
Nn5g30956 Nelumbo nucifera HOM05D001343 ORTHO05D007223 1.3e-143 514.6 762 49.9
Thhalv10003686m.g Eutrema salsugineum HOM05D001343 ORTHO05D007223 3.9e-143 513.1 792 48.9
PSO170G3735 Papaver somniferum HOM05D001343 ORTHO05D007223 6.6e-143 512.3 760 50.1
Sopen02g027640 Solanum pennellii HOM05D001343 ORTHO05D007223 5.6e-142 509.2 796 50.3
Nitab4.5_0002967g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 1.5e-139 501.1 799 50.4
MELO3C013733.2 Cucumis melo HOM05D001343 ORTHO05D007223 1.7e-138 497.7 808 49.1
Sc16g0001690 Simmondsia chinensis HOM05D001343 ORTHO05D007223 3.8e-138 496.5 792 52.1
Glyma.11G084200 Glycine max HOM05D001343 ORTHO05D007223 4.9e-138 496.1 793 52.7
Carub.0008s2848 Capsella rubella HOM05D001343 ORTHO05D007223 8.4e-138 495.4 775 46.6
unitig_88.g27773 Utricularia gibba HOM05D001343 ORTHO05D007223 8.4e-138 495.4 776 48.7
Medtr5g023770 Medicago truncatula HOM05D001343 ORTHO05D007223 5.4e-137 492.7 774 51.9
Cc07_g11650 Coffea canephora HOM05D001343 ORTHO05D007223 9.3e-137 491.9 801 51.9
Lsat_1_v5_gn_2_74420 Lactuca sativa HOM05D001343 ORTHO05D007223 3.5e-136 490.0 802 49.1
Lj2g0004784 Lotus japonicus HOM05D001343 ORTHO05D007223 7.9e-136 488.8 805 48.0
AL8G45590 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 2.3e-135 487.3 799 47.8
BcaC04g23105 Brassica carinata HOM05D001343 ORTHO05D002008 2.5e-134 483.8 740 50.3
C09p12110 Brassica napus HOM05D001343 ORTHO05D002008 7.4e-134 482.3 755 49.7
arahy.Tifrunner.gnm1.ann1.AU9Y8G Arachis hypogaea HOM05D001343 ORTHO05D007223 1.3e-133 481.5 801 48.4
arahy.Tifrunner.gnm1.ann1.SLQH96 Arachis hypogaea HOM05D001343 ORTHO05D007223 1.3e-133 481.5 801 48.4
VMungo1215G1031 Vigna mungo HOM05D001343 ORTHO05D007223 9.0e-132 475.3 802 50.6
Ca_24963_v3 Cicer arietinum L. HOM05D001343 ORTHO05D007223 1.0e-130 471.9 821 50.8
Sp2g30660 Schrenkiella parvula HOM05D001343 ORTHO05D007223 5.5e-129 466.1 784 46.9
Zm00001eb104860 Zea mays HOM05D001343 ORTHO05D007223 7.1e-129 465.7 749 44.5
A09p10220 Brassica napus HOM05D001343 ORTHO05D002008 3.5e-128 463.4 752 46.9
BraA09t36667Z Brassica rapa HOM05D001343 ORTHO05D002008 1.0e-127 461.8 741 47.5
BolC9t54101H Brassica oleracea HOM05D001343 ORTHO05D002008 5.1e-127 459.5 747 46.6
AUR62003379 Chenopodium quinoa HOM05D001343 ORTHO05D007223 5.1e-127 459.5 792 45.7
AUR62029449 Chenopodium quinoa HOM05D001343 ORTHO05D007223 2.8e-125 453.8 794 45.2
Eucgr.J02528 Eucalyptus grandis HOM05D001343 ORTHO05D007223 1.3e-119 434.9 775 47.0
Os07g0472500 Oryza sativa ssp. japonica HOM05D001343 ORTHO05D007223 2.2e-117 427.6 745 46.0
Lj4A232G45 Lonicera japonica HOM05D001343 ORTHO05D007223 3.6e-112 410.2 770 47.8
HPP92_003502 Vanilla planifolia HOM05D001343 ORTHO05D007223 1.2e-104 385.2 759 41.1
Manes.01G153700 Manihot esculenta HOM05D001343 ORTHO05D007223 1.8e-103 381.3 501 48.3
DCAR_011583 Daucus carota HOM05D001343 ORTHO05D007223 3.0e-103 380.6 783 47.3
Mapoly0179s0009 Marchantia polymorpha HOM05D001343 ORTHO05D007223 2.8e-101 374.0 814 36.4
CARHR281730 Cardamine hirsuta HOM05D001343 ORTHO05D007223 2.6e-94 350.9 418 51.4
SEGI_12448 Sequoiadendron giganteum HOM05D001343 ORTHO05D007223 1.4e-92 345.1 785 40.1
AagrBONN_evm.TU.Sc2ySwM_344.163 Anthoceros agrestis HOM05D001343 ORTHO05D007223 8.5e-90 335.9 667 38.8
Pp3c20_18210 Physcomitrium patens HOM05D001343 ORTHO05D007223 2.0e-86 324.7 826 33.1
CDE07G1064 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 4.3e-65 253.8 250 58.8
Pp3c23_9770 Physcomitrium patens HOM05D001343 ORTHO05D007223 4.3e-65 253.8 771 33.3
CDE06G1375 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 8.0e-64 249.6 258 56.6
RcHm_v2.0_Chr2g0097451 Rosa chinensis HOM05D001343 ORTHO05D007223 1.8e-63 248.4 190 75.3
Migut.L00927 Erythranthe guttata HOM05D001343 ORTHO05D007223 3.7e-61 240.7 379 58.3
Actinidia26548 Actinidia chinensis HOM05D001343 ORTHO05D007223 3.2e-60 237.7 234 61.5
RcHm_v2.0_Chr2g0097461 Rosa chinensis HOM05D001343 ORTHO05D007223 1.6e-59 235.3 564 43.6
RcHm_v2.0_Chr2g0097581 Rosa chinensis HOM05D001343 ORTHO05D007223 7.8e-59 233.0 566 45.2
Psat2g150480 Pisum sativum HOM05D001343 ORTHO05D007223 5.2e-55 220.3 202 63.9
Migut.L00811 Erythranthe guttata HOM05D001343 ORTHO05D007223 1.5e-54 218.8 132 90.2
Psat2g150520 Pisum sativum HOM05D001343 ORTHO05D007223 1.4e-47 195.7 512 40.0
Rhsim10G0198000 Rhododendron simsii HOM05D001343 ORTHO05D007223 2.3e-42 178.3 214 54.2
CDE07G1287 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 2.5e-41 174.9 363 43.5
QL06p053793 Quercus lobata HOM05D001343 ORTHO05D007223 9.6e-41 172.9 137 74.5
CBR_g34809 Chara braunii HOM05D000019 ORTHO05D000002 1.4e-36 159.1 366 35.2
RcHm_v2.0_Chr2g0097571 Rosa chinensis HOM05D001343 ORTHO05D007223 2.4e-36 158.3 123 74.8
Oeu032010.1 Olea europaea HOM05D001343 ORTHO05D007223 1.3e-32 146.0 192 56.2
arahy.Tifrunner.gnm1.ann1.ISY8LN Arachis hypogaea HOM05D001343 ORTHO05D007223 4.6e-27 127.5 177 46.9
arahy.Tifrunner.gnm1.ann1.9PSP05 Arachis hypogaea HOM05D001343 ORTHO05D007223 5.1e-26 124.0 165 52.1
Cpa.g.sc1414.4 Carica papaya HOM05D001343 ORTHO05D007223 4.9e-21 107.5 290 48.3
arahy.Tifrunner.gnm1.ann1.6P6C0I Arachis hypogaea HOM05D001343 ORTHO05D007223 3.3e-17 94.7 95 65.3
arahy.Tifrunner.gnm1.ann1.T78FCF Arachis hypogaea HOM05D001343 ORTHO05D007223 5.3e-15 87.4 78 66.7
RcHm_v2.0_Chr6g0253501 Rosa chinensis HOM05D001343 ORTHO05D007223 6.9e-15 87.0 142 44.4
HPP92_003508 Vanilla planifolia HOM05D001343 ORTHO05D007223 2.0e-14 85.5 56 80.4
Aa31LG1G14520 Aethionema arabicum HOM05D001343 ORTHO05D007223 2.6e-14 85.1 257 45.5
AL472U10010 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 3.8e-13 81.3 151 35.8
QL06p052753 Quercus lobata HOM05D003687 ORTHO05D007223 1.9e-12 79.0 55 70.9
Actinidia26547 Actinidia chinensis HOM05D001343 ORTHO05D007223 6.0e-11 73.9 152 40.8
arahy.Tifrunner.gnm1.ann1.QS1PDB Arachis hypogaea HOM05D001343 ORTHO05D007223 1.0e-10 73.2 79 49.4
RcHm_v2.0_Chr2g0097561 Rosa chinensis HOM05D001343 ORTHO05D007223 3.7e-08 64.7 47 72.3
CDE06G1191 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 6.3e-08 63.9 101 34.7
Lsat_1_v5_gn_4_84780 Lactuca sativa HOM05D003172 ORTHO05D007223 1.1e-07 63.2 52 69.2
Cre09.g398808 Chlamydomonas reinhardtii HOM05D001343 ORTHO05D007223 1.8e-07 62.4 95 40.0
Glyma.18G186501 Glycine max HOM05D001343 ORTHO05D007223 4.1e-07 61.2 70 48.6
CDE06G1033 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 1.2e-06 59.7 75 45.3
Oeu020654.1 Olea europaea HOM05D001343 ORTHO05D007223 4.5e-06 57.8 32 87.5


User provided reference genes

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