Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold12G05971 Striga asiatica HOM05D005146 ORTHO05D006752 1.8e-159 565.8 280 100.0
Migut.N03153 Erythranthe guttata HOM05D005146 ORTHO05D006752 1.9e-140 502.7 276 88.8
Thecc.09G245400 Theobroma cacao HOM05D005146 ORTHO05D006752 2.1e-131 472.6 276 81.5
PGR083G0855 Punica granatum HOM05D005146 ORTHO05D006752 3.9e-130 468.4 276 80.4
Eucgr.F01641 Eucalyptus grandis HOM05D005146 ORTHO05D006752 1.9e-129 466.1 277 79.1
TWI56G0936 Tripterygium wilfordii HOM05D005146 ORTHO05D006752 1.9e-129 466.1 272 81.2
Potri.002G023700 Populus trichocarpa HOM05D005146 ORTHO05D006752 3.3e-129 465.3 276 79.7
QL02p011373 Quercus lobata HOM05D005146 ORTHO05D006752 4.3e-129 464.9 276 80.4
Atru.chr13.312 Acer truncatum HOM05D005146 ORTHO05D006752 5.6e-129 464.5 272 82.0
unitig_746.g26814 Utricularia gibba HOM05D005146 ORTHO05D006752 7.3e-129 464.2 278 79.9
Nn6g32362 Nelumbo nucifera HOM05D005146 ORTHO05D006752 9.6e-129 463.8 279 78.5
Cc10_g01800 Coffea canephora HOM05D005146 ORTHO05D006752 2.8e-128 462.2 272 81.6
Gohir.D08G020900 Gossypium hirsutum HOM05D005146 ORTHO05D006752 2.8e-128 462.2 276 79.3
Nitab4.5_0001540g0020 Nicotiana tabacum HOM05D005146 ORTHO05D006752 2.8e-128 462.2 270 81.9
PGSC0003DMG400003775 Solanum tuberosum HOM05D005146 ORTHO05D006752 2.8e-128 462.2 270 80.4
Rhsim06G0022400 Rhododendron simsii HOM05D005146 ORTHO05D006752 3.6e-128 461.8 276 79.0
GSVIVG01009887001 Vitis vinifera HOM05D005146 ORTHO05D006752 3.6e-128 461.8 276 79.3
CANSAT11G0704 Cannabis sativa HOM05D005146 ORTHO05D006752 6.2e-128 461.1 276 77.9
Sabra02G0019300 Salix brachista HOM05D005146 ORTHO05D006752 6.2e-128 461.1 276 79.0
Ciclev10002090m.g Citrus clementina HOM05D005146 ORTHO05D006752 1.1e-127 460.3 272 79.4
Dinv31832 Davidia involucrata HOM05D005146 ORTHO05D006752 1.1e-127 460.3 275 78.5
Actinidia15413 Actinidia chinensis HOM05D005146 ORTHO05D006752 1.8e-127 459.5 272 80.1
DCAR_009928 Daucus carota HOM05D005146 ORTHO05D006752 2.4e-127 459.1 272 79.0
Glyma.07G217500 Glycine max HOM05D005146 ORTHO05D006752 2.4e-127 459.1 271 80.1
Manes.05G148600 Manihot esculenta HOM05D005146 ORTHO05D006752 2.4e-127 459.1 276 79.0
Glyma.20G014100 Glycine max HOM05D005146 ORTHO05D006752 3.1e-127 458.8 275 78.9
Solyc04g081310.3 Solanum lycopersicum HOM05D005146 ORTHO05D006752 3.1e-127 458.8 270 80.0
Sopen04g034930 Solanum pennellii HOM05D005146 ORTHO05D006752 3.1e-127 458.8 270 80.0
CiPaw.07G151400 Carya illinoinensis HOM05D005146 ORTHO05D006752 4.0e-127 458.4 276 79.0
Gohir.A08G010500 Gossypium hirsutum HOM05D005146 ORTHO05D006752 5.3e-127 458.0 276 78.6
Manes.11G065850 Manihot esculenta HOM05D005146 ORTHO05D006752 5.3e-127 458.0 276 78.6
TPR.G34539 Trifolium pratense HOM05D005146 ORTHO05D006752 5.3e-127 458.0 271 80.4
CAN.G311.14 Capsicum annuum HOM05D005146 ORTHO05D006752 6.9e-127 457.6 270 80.4
Medtr3g113750 Medicago truncatula HOM05D005146 ORTHO05D006752 9.0e-127 457.2 271 79.7
CsaV3_2G029420 Cucumis sativus L. HOM05D005146 ORTHO05D006752 1.2e-126 456.8 271 80.1
ECA238G2776 Erigeron canadensis HOM05D005146 ORTHO05D006752 1.2e-126 456.8 271 79.3
Hund05199 Selenicereus undatus HOM05D005146 ORTHO05D006752 1.2e-126 456.8 272 78.7
Psat5g013440 Pisum sativum HOM05D005146 ORTHO05D006752 1.5e-126 456.4 271 79.7
Cpa.g.sc1059.3 Carica papaya HOM05D005146 ORTHO05D006752 2.0e-126 456.1 272 80.5
VMungo0251G0853 Vigna mungo HOM05D005146 ORTHO05D006752 2.0e-126 456.1 271 78.6
CSS0007392 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 2.6e-126 455.7 275 78.9
CSS0032974 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 2.6e-126 455.7 275 78.9
Lsat_1_v5_gn_2_8601 Lactuca sativa HOM05D005146 ORTHO05D006752 2.6e-126 455.7 271 79.7
MD15G1013600 Malus domestica HOM05D005146 ORTHO05D006752 3.4e-126 455.3 271 78.2
Sed0001191 Sechium edule HOM05D005146 ORTHO05D006752 3.4e-126 455.3 271 79.7
Phvul.001G002400 Phaseolus vulgaris HOM05D005146 ORTHO05D006752 5.8e-126 454.5 271 79.0
Haze_04102 Corylus avellana HOM05D005146 ORTHO05D006752 1.7e-125 453.0 276 78.6
PSO700G0287 Papaver somniferum HOM05D005146 ORTHO05D006752 1.7e-125 453.0 275 77.5
HanXRQChr06g0183611 Helianthus annuus HOM05D005146 ORTHO05D006752 2.2e-125 452.6 271 78.6
Thhalv10025950m.g Eutrema salsugineum HOM05D005146 ORTHO05D006752 2.9e-125 452.2 272 80.1
RcHm_v2.0_Chr6g0302671 Rosa chinensis HOM05D005146 ORTHO05D006752 2.9e-125 452.2 271 78.2
Cfa006669 Carpinus fangiana HOM05D005146 ORTHO05D006752 4.9e-125 451.4 276 78.6
Prupe.1G367100 Prunus persica HOM05D005146 ORTHO05D006752 4.9e-125 451.4 276 75.7
HPP92_027733 Vanilla planifolia HOM05D005146 ORTHO05D006752 6.4e-125 451.1 272 78.3
MD08G1014100 Malus domestica HOM05D005146 ORTHO05D006752 8.4e-125 450.7 271 77.1
FvH4_2g38650 Fragaria vesca HOM05D005146 ORTHO05D006752 1.4e-124 449.9 271 78.2
BraA01t00610Z Brassica rapa HOM05D005146 ORTHO05D006752 1.9e-124 449.5 277 78.0
CARHR239690 Cardamine hirsuta HOM05D005146 ORTHO05D006752 1.9e-124 449.5 277 78.7
Ca_14210_v3 Cicer arietinum L. HOM05D005146 ORTHO05D006752 1.9e-124 449.5 271 79.0
Os03g0355800 Oryza sativa ssp. japonica HOM05D005146 ORTHO05D006752 1.9e-124 449.5 274 75.5
PSO170G4907 Papaver somniferum HOM05D005146 ORTHO05D006752 1.9e-124 449.5 269 78.8
AL7G20220 Arabidopsis lyrata HOM05D005146 ORTHO05D006752 2.4e-124 449.1 277 78.3
AT4G31790 Arabidopsis thaliana HOM05D005146 ORTHO05D006752 4.2e-124 448.4 277 78.3
Sp7g29580 Schrenkiella parvula HOM05D005146 ORTHO05D006752 4.2e-124 448.4 277 78.0
FAN27G1976 Fragaria x ananassa HOM05D005146 ORTHO05D006752 5.4e-124 448.0 271 77.9
BcaC09g51970 Brassica carinata HOM05D005146 ORTHO05D006752 9.3e-124 447.2 277 77.6
BolC1t00708H Brassica oleracea HOM05D005146 ORTHO05D006752 9.3e-124 447.2 277 77.6
FAN20G2808 Fragaria x ananassa HOM05D005146 ORTHO05D006752 9.3e-124 447.2 271 78.2
Oeu020876.1 Olea europaea HOM05D005146 ORTHO05D006752 1.2e-123 446.8 262 81.7
BcaNung05185 Brassica carinata HOM05D005146 ORTHO05D006752 1.6e-123 446.4 277 76.9
C01p07160 Brassica napus HOM05D005146 ORTHO05D006752 1.6e-123 446.4 277 77.6
FAN15G2679 Fragaria x ananassa HOM05D005146 ORTHO05D006752 1.6e-123 446.4 271 77.5
A01p06490 Brassica napus HOM05D005146 ORTHO05D006752 2.1e-123 446.0 277 77.3
Carub.0007s0877 Capsella rubella HOM05D005146 ORTHO05D006752 2.7e-123 445.7 272 79.0
THA.LOC104825772 Tarenaya hassleriana HOM05D005146 ORTHO05D006752 2.7e-123 445.7 272 77.9
AUR62019460 Chenopodium quinoa HOM05D005146 ORTHO05D006752 4.6e-123 444.9 273 78.0
ATR0797G002 Amborella trichopoda HOM05D005146 ORTHO05D006752 1.0e-122 443.7 276 76.1
Lalb_Chr23g0266181 Lupinus albus HOM05D005146 ORTHO05D006752 1.7e-122 443.0 271 76.8
Aa31LG2G18510 Aethionema arabicum HOM05D005146 ORTHO05D006752 5.1e-122 441.4 277 77.6
Ah.08g209140 Amaranthus hybridus HOM05D005146 ORTHO05D006752 2.5e-121 439.1 304 71.7
Aqoxy5G01768 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 4.3e-121 438.3 272 76.5
Lj1g0002754 Lotus japonicus HOM05D005146 ORTHO05D006752 5.6e-121 438.0 271 76.0
Zm00001eb017150 Zea mays HOM05D005146 ORTHO05D006752 7.3e-121 437.6 272 74.3
SalBow3G2629 Salvia bowleyana HOM05D005146 ORTHO05D006752 1.3e-120 436.8 245 84.9
EL10Ac6g13895 Beta vulgaris HOM05D005146 ORTHO05D006752 1.6e-120 436.4 306 69.9
arahy.Tifrunner.gnm1.ann1.DQ6KFY Arachis hypogaea HOM05D005146 ORTHO05D006752 8.1e-120 434.1 271 75.3
arahy.Tifrunner.gnm1.ann1.RM6BI2 Arachis hypogaea HOM05D005146 ORTHO05D006752 8.1e-120 434.1 271 74.9
arahy.Tifrunner.gnm1.ann1.VN499F Arachis hypogaea HOM05D005146 ORTHO05D006752 5.3e-119 431.4 271 74.9
COL.COLO4_37538 Corchorus olitorius HOM05D005146 ORTHO05D006752 1.2e-118 430.3 257 79.8
Lj5g0000481 Lotus japonicus HOM05D005146 ORTHO05D006752 2.6e-118 429.1 271 75.3
ClCG08G014400 Citrullus lanatus HOM05D005146 ORTHO05D006752 1.4e-116 423.3 276 74.3
Pp3c25_4490 Physcomitrium patens HOM05D005146 ORTHO05D006752 2.7e-115 419.1 271 70.8
Mapoly0107s0028 Marchantia polymorpha HOM05D005146 ORTHO05D006752 7.9e-115 417.5 271 69.7
arahy.Tifrunner.gnm1.ann1.NX94TN Arachis hypogaea HOM05D005146 ORTHO05D006752 1.8e-114 416.4 301 67.1
Aqoxy6G00492 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 3.0e-114 415.6 263 72.6
Duzib150G0501 Durio zibethinus HOM05D005146 ORTHO05D006752 8.7e-114 414.1 276 73.2
AagrBONN_evm.TU.Sc2ySwM_117.1420 Anthoceros agrestis HOM05D005146 ORTHO05D006752 1.5e-113 413.3 271 69.0
Gorai.004G015300 Gossypium raimondii HOM05D005146 ORTHO05D006752 1.9e-113 412.9 276 72.5
MELO3C011001.2 Cucumis melo HOM05D005146 ORTHO05D006752 6.2e-112 407.9 283 71.4
MBI09_g15694_MAGBIO Magnolia biondii HOM05D005146 ORTHO05D006752 1.8e-111 406.4 387 55.3
AagrBONN_evm.TU.Sc2ySwM_368.2751 Anthoceros agrestis HOM05D005146 ORTHO05D006752 6.9e-111 404.4 271 68.3
HPP92_026026 Vanilla planifolia HOM05D005146 ORTHO05D006752 1.5e-110 403.3 244 78.3
Peaxi162Scf00438g00626 Petunia axillaris HOM05D005146 ORTHO05D006752 4.9e-109 398.3 270 72.6
CBR_g41468 Chara braunii HOM05D005146 ORTHO05D006752 1.3e-106 390.2 279 65.6
CDE05G1835 Ceratophyllum demersum HOM05D005146 ORTHO05D006752 4.8e-104 381.7 242 74.0
vmacro21720 Vaccinium macrocarpon HOM05D005146 ORTHO05D006752 6.9e-103 377.9 226 77.9
SMO146G0393 Selaginella moellendorffii HOM05D005146 ORTHO05D006752 4.5e-102 375.2 271 64.6
Hma1.2p1_0638F.1_g193760 Hydrangea macrophylla HOM05D005146 ORTHO05D006752 2.9e-101 372.5 226 77.9
CSS0032399 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 5.5e-100 368.2 251 72.5
RcHm_v2.0_Chr7g0221331 Rosa chinensis HOM05D005146 ORTHO05D006752 4.8e-96 355.1 271 64.9
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 3.8e-93 345.5 221 76.0
Cre05.g233300 Chlamydomonas reinhardtii HOM05D005146 ORTHO05D006752 1.9e-92 343.2 271 60.5
MCO08G273 Micromonas commoda HOM05D005146 ORTHO05D006752 1.4e-90 337.0 275 59.3
TAR628G0140 Trochodendron aralioides HOM05D005146 ORTHO05D006752 5.1e-90 335.1 197 81.7
PRCOL_00004436 Prasinoderma coloniale HOM05D005146 ORTHO05D006752 2.0e-89 333.2 295 55.6
C09p44220 Brassica napus HOM05D005146 ORTHO05D006752 2.5e-84 316.2 277 57.8
Sc26g0004380 Simmondsia chinensis HOM05D005146 ORTHO05D006752 4.7e-83 312.0 186 78.0
BolC8t49001H Brassica oleracea HOM05D005146 ORTHO05D006752 6.1e-83 311.6 271 59.4
C08p13630 Brassica napus HOM05D005146 ORTHO05D006752 2.3e-82 309.7 271 59.0
Oeu039057.1 Olea europaea HOM05D005146 ORTHO05D006752 7.0e-79 298.1 246 63.8
Haze_26822 Corylus avellana HOM05D005146 ORTHO05D006752 8.5e-77 291.2 282 50.7
BcaC04g20385 Brassica carinata HOM05D005146 ORTHO05D006752 2.5e-76 289.7 277 54.2
ATR0816G001 Amborella trichopoda HOM05D005146 ORTHO05D006752 5.5e-76 288.5 168 82.1
MSTRG.25237 Avicennia marina HOM05D005146 ORTHO05D006752 1.4e-71 273.9 160 79.4
Lj4A797T61 Lonicera japonica HOM05D005146 ORTHO05D006752 5.3e-71 271.9 152 88.2
BcaC04g20389 Brassica carinata HOM05D005146 ORTHO05D006752 5.9e-70 268.5 277 50.2
Medtr1g107520 Medicago truncatula HOM05D005146 ORTHO05D006752 8.8e-66 254.6 165 75.2
AUR62036170 Chenopodium quinoa HOM05D005146 ORTHO05D006752 9.1e-63 244.6 209 60.8
BcaC04g20387 Brassica carinata HOM05D005146 ORTHO05D006752 2.6e-49 199.9 277 43.0
Duzib170G0783 Durio zibethinus HOM05D005146 ORTHO05D006752 9.8e-49 198.0 278 43.2
BolC9t57294H Brassica oleracea HOM05D005146 ORTHO05D006752 2.9e-48 196.4 159 60.4
CSS0002428 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 7.0e-47 191.8 272 44.5
MELO3C029148.2 Cucumis melo HOM05D005146 ORTHO05D006752 8.6e-45 184.9 169 58.0
Medtr3g114210 Medicago truncatula HOM05D005146 ORTHO05D006752 2.7e-38 163.3 159 58.5
Lj4A797T60 Lonicera japonica HOM05D005146 ORTHO05D006752 1.8e-34 150.6 95 69.5
BcaC04g20388 Brassica carinata HOM05D005146 ORTHO05D006752 6.0e-30 135.6 185 43.8
BolC8t52160H Brassica oleracea HOM05D005146 ORTHO05D032927 3.9e-29 132.9 265 37.4
Oeu039054.1 Olea europaea HOM05D000784 ORTHO05D000116 6.6e-29 132.1 119 58.0
SEGI_30125 Sequoiadendron giganteum HOM05D005146 ORTHO05D006752 7.3e-28 128.6 98 62.2
BcaC07g41610 Brassica carinata HOM05D005146 ORTHO05D032927 1.6e-27 127.5 269 35.7
Lsat_1_v5_gn_2_8581 Lactuca sativa HOM05D000202 ORTHO05D000117 4.9e-24 115.9 134 44.0
Lsat_1_v5_gn_2_8661 Lactuca sativa HOM05D000202 ORTHO05D000117 4.1e-23 112.8 134 43.3
C08p46100 Brassica napus HOM05D005146 ORTHO05D032927 7.1e-23 112.1 98 58.2
MELO3C032066.2 Cucumis melo HOM05D005146 ORTHO05D006752 3.1e-18 96.7 73 64.4
CAN.G1688.3 Capsicum annuum HOM05D005146 ORTHO05D011342 2.0e-17 94.0 64 64.1
BcaNung04119 Brassica carinata HOM05D001941 ORTHO05D002198 8.7e-13 78.6 45 82.2
MELO3C033356.2 Cucumis melo HOM05D005146 ORTHO05D166957 1.5e-09 67.8 49 67.3
Actinidia16979 Actinidia chinensis HOM05D005146 ORTHO05D006752 4.4e-09 66.2 72 47.2
Cfa017682 Carpinus fangiana HOM05D005146 ORTHO05D123472 1.6e-06 57.8 49 63.3


User provided reference genes

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