Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold12G05968 Striga asiatica HOM05D005261 ORTHO05D006180 1.9e-192 675.6 334 100.0
MSTRG.24247 Avicennia marina HOM05D005261 ORTHO05D006180 8.7e-137 490.7 342 71.9
Migut.N03156 Erythranthe guttata HOM05D005261 ORTHO05D006180 1.3e-129 466.8 325 72.3
Cc10_g05970 Coffea canephora HOM05D005261 ORTHO05D006180 2.3e-129 466.1 341 68.0
THA.LOC104813129 Tarenaya hassleriana HOM05D005261 ORTHO05D006180 8.7e-129 464.2 296 76.0
Dinv13059 Davidia involucrata HOM05D005261 ORTHO05D006180 1.6e-127 459.9 356 65.2
CAN.G617.12 Capsicum annuum HOM05D005261 ORTHO05D006180 8.2e-127 457.6 366 64.5
Nitab4.5_0002561g0060 Nicotiana tabacum HOM05D005261 ORTHO05D006180 1.1e-126 457.2 341 67.2
Thecc.08G114100 Theobroma cacao HOM05D005261 ORTHO05D006180 1.8e-126 456.4 312 72.4
Solyc04g072390.3 Solanum lycopersicum HOM05D005261 ORTHO05D006180 4.1e-126 455.3 351 65.8
TWI36G1273 Tripterygium wilfordii HOM05D005261 ORTHO05D006180 5.3e-126 454.9 316 71.2
Nitab4.5_0001915g0120 Nicotiana tabacum HOM05D005261 ORTHO05D006180 6.9e-126 454.5 352 65.3
Nitab4.5_0003428g0020 Nicotiana tabacum HOM05D005261 ORTHO05D006180 6.9e-126 454.5 351 64.4
Sabra02G0072100 Salix brachista HOM05D005261 ORTHO05D006180 1.2e-125 453.8 304 72.0
Sopen04g028560 Solanum pennellii HOM05D005261 ORTHO05D006180 1.2e-125 453.8 351 65.2
Dinv44727 Davidia involucrata HOM05D005261 ORTHO05D006180 3.4e-125 452.2 318 70.4
Prupe.1G509000 Prunus persica HOM05D005261 ORTHO05D006180 3.4e-125 452.2 310 71.9
HanXRQChr02g0043751 Helianthus annuus HOM05D005261 ORTHO05D006180 4.5e-125 451.8 308 72.4
Duzib093G0733 Durio zibethinus HOM05D005261 ORTHO05D006180 5.9e-125 451.4 311 70.4
Actinidia31491 Actinidia chinensis HOM05D005261 ORTHO05D006180 7.7e-125 451.1 316 69.0
RcHm_v2.0_Chr7g0240261 Rosa chinensis HOM05D005261 ORTHO05D006180 7.7e-125 451.1 312 70.2
Manes.02G212400 Manihot esculenta HOM05D005261 ORTHO05D006180 1.0e-124 450.7 317 69.1
GSVIVG01008967001 Vitis vinifera HOM05D005261 ORTHO05D006180 1.0e-124 450.7 315 69.8
Atru.chr13.1289 Acer truncatum HOM05D005261 ORTHO05D006180 1.3e-124 450.3 316 70.3
BcaC02g11530 Brassica carinata HOM05D005261 ORTHO05D006180 1.3e-124 450.3 295 73.9
BraA05t20051Z Brassica rapa HOM05D005261 ORTHO05D006180 1.3e-124 450.3 302 72.8
CsaV3_2G033630 Cucumis sativus L. HOM05D005261 ORTHO05D006180 2.2e-124 449.5 313 70.6
Cpa.g.sc77.98 Carica papaya HOM05D005261 ORTHO05D006180 2.9e-124 449.1 314 71.0
Sed0017821 Sechium edule HOM05D005261 ORTHO05D006180 2.9e-124 449.1 361 63.4
Ciclev10001407m.g Citrus clementina HOM05D005261 ORTHO05D006180 5.0e-124 448.4 316 68.4
Eucgr.H00927 Eucalyptus grandis HOM05D005261 ORTHO05D006180 5.0e-124 448.4 319 68.7
MELO3C008135.2 Cucumis melo HOM05D005261 ORTHO05D006180 6.5e-124 448.0 313 70.3
Gorai.010G045400 Gossypium raimondii HOM05D005261 ORTHO05D006180 6.5e-124 448.0 356 65.2
Hma1.2p1_0276F.1_g111380 Hydrangea macrophylla HOM05D005261 ORTHO05D006180 6.5e-124 448.0 305 71.1
C04p14350 Brassica napus HOM05D005261 ORTHO05D006180 8.5e-124 447.6 291 74.6
CiPaw.06G023200 Carya illinoinensis HOM05D005261 ORTHO05D006180 8.5e-124 447.6 314 70.1
FAN08G3477 Fragaria x ananassa HOM05D005261 ORTHO05D006180 8.5e-124 447.6 312 69.9
FvH4_5g38270 Fragaria vesca HOM05D005261 ORTHO05D006180 1.1e-123 447.2 312 69.9
FAN04G2261 Fragaria x ananassa HOM05D005261 ORTHO05D006180 1.1e-123 447.2 312 70.2
FAN13G1502 Fragaria x ananassa HOM05D005261 ORTHO05D006180 1.1e-123 447.2 312 69.9
PGR042G1365 Punica granatum HOM05D005261 ORTHO05D006180 1.1e-123 447.2 347 65.1
unitig_22.g6794 Utricularia gibba HOM05D005261 ORTHO05D006180 1.4e-123 446.8 340 65.6
Cfa015937 Carpinus fangiana HOM05D005261 ORTHO05D006180 2.5e-123 446.0 310 70.3
QL12p035629 Quercus lobata HOM05D005261 ORTHO05D006180 2.5e-123 446.0 314 70.7
Gohir.D06G040600 Gossypium hirsutum HOM05D005261 ORTHO05D006180 5.5e-123 444.9 356 64.9
A05p11060 Brassica napus HOM05D005261 ORTHO05D006180 7.2e-123 444.5 298 73.2
FAN18G3314 Fragaria x ananassa HOM05D005261 ORTHO05D006180 7.2e-123 444.5 312 69.2
Aa31LG6G9000 Aethionema arabicum HOM05D005261 ORTHO05D006180 9.4e-123 444.1 399 59.4
Sc14g0001090 Simmondsia chinensis HOM05D005261 ORTHO05D006180 9.4e-123 444.1 288 74.0
Ah.03g139490 Amaranthus hybridus HOM05D005261 ORTHO05D006180 1.2e-122 443.7 313 70.6
EL10Ac1g01697 Beta vulgaris HOM05D005261 ORTHO05D006180 1.2e-122 443.7 313 70.6
Rhsim07G0199400 Rhododendron simsii HOM05D005261 ORTHO05D006180 1.2e-122 443.7 325 68.3
RhsimUnG0073100 Rhododendron simsii HOM05D005261 ORTHO05D006180 1.2e-122 443.7 325 68.3
vmacro04773 Vaccinium macrocarpon HOM05D005261 ORTHO05D006180 1.2e-122 443.7 325 67.7
ClCG11G007980 Citrullus lanatus HOM05D005261 ORTHO05D006180 1.6e-122 443.4 339 65.8
MD08G1174900 Malus domestica HOM05D005261 ORTHO05D006180 2.7e-122 442.6 311 69.8
Thhalv10004311m.g Eutrema salsugineum HOM05D005261 ORTHO05D006180 3.6e-122 442.2 367 62.1
CANSAT54G1848 Cannabis sativa HOM05D005261 ORTHO05D006180 4.6e-122 441.8 302 70.5
CARHR034970 Cardamine hirsuta HOM05D005261 ORTHO05D006180 7.9e-122 441.0 308 70.5
Sp1g30710 Schrenkiella parvula HOM05D005261 ORTHO05D006180 7.9e-122 441.0 393 58.8
BcaB03g13642 Brassica carinata HOM05D005261 ORTHO05D006180 1.0e-121 440.7 334 65.9
A08p07950 Brassica napus HOM05D005261 ORTHO05D006180 1.8e-121 439.9 321 67.9
BraA08t32817Z Brassica rapa HOM05D005261 ORTHO05D006180 1.8e-121 439.9 321 67.9
DCAR_023858 Daucus carota HOM05D005261 ORTHO05D006180 3.9e-121 438.7 320 68.4
arahy.Tifrunner.gnm1.ann1.S5D643 Arachis hypogaea HOM05D005261 ORTHO05D006180 5.1e-121 438.3 343 64.4
Ca_26314_v3 Cicer arietinum L. HOM05D005261 ORTHO05D006180 5.1e-121 438.3 301 71.4
arahy.Tifrunner.gnm1.ann1.232HHD Arachis hypogaea HOM05D005261 ORTHO05D006180 1.5e-120 436.8 356 62.9
Glyma.04G107300 Glycine max HOM05D005261 ORTHO05D006180 2.0e-120 436.4 299 70.9
BolC4t23021H Brassica oleracea HOM05D005261 ORTHO05D006180 3.3e-120 435.6 286 74.8
Glyma.06G107100 Glycine max HOM05D005261 ORTHO05D006180 4.3e-120 435.3 299 70.6
VMungo1309G2277 Vigna mungo HOM05D005261 ORTHO05D006180 4.3e-120 435.3 300 70.3
BcaC07g37496 Brassica carinata HOM05D005261 ORTHO05D006180 5.7e-120 434.9 332 65.7
BolC8t47816H Brassica oleracea HOM05D005261 ORTHO05D006180 5.7e-120 434.9 332 65.7
AT1G36310 Arabidopsis thaliana HOM05D005261 ORTHO05D006180 7.4e-120 434.5 333 65.8
Carub.0001s3363 Capsella rubella HOM05D005261 ORTHO05D006180 7.4e-120 434.5 335 65.4
Aqoxy6G00521 Aquilegia oxysepala HOM05D005261 ORTHO05D006180 1.7e-119 433.3 314 66.9
Lsat_1_v5_gn_1_3980 Lactuca sativa HOM05D005261 ORTHO05D006180 2.2e-119 433.0 352 62.2
TPR.G16249 Trifolium pratense HOM05D005261 ORTHO05D006180 3.7e-119 432.2 301 69.8
Haze_00548 Corylus avellana HOM05D005261 ORTHO05D006180 4.8e-119 431.8 341 64.2
Phvul.009G027100 Phaseolus vulgaris HOM05D005261 ORTHO05D006180 6.3e-119 431.4 300 69.3
AL1G50930 Arabidopsis lyrata HOM05D005261 ORTHO05D006180 1.4e-118 430.3 335 64.8
MBI02_g34268_MAGBIO Magnolia biondii HOM05D005261 ORTHO05D006180 6.9e-118 427.9 324 65.1
Lj1g0011675 Lotus japonicus HOM05D005261 ORTHO05D006180 2.0e-117 426.4 299 69.6
Medtr2g460880 Medicago truncatula HOM05D005261 ORTHO05D006180 4.5e-117 425.2 301 68.8
Duzib041G0715 Durio zibethinus HOM05D005261 ORTHO05D006180 1.0e-116 424.1 304 70.4
PSO541G3947 Papaver somniferum HOM05D005261 ORTHO05D006180 1.3e-116 423.7 330 63.3
PSO447G0033 Papaver somniferum HOM05D005261 ORTHO05D006180 2.9e-116 422.5 309 66.0
Psat5g135960 Pisum sativum HOM05D005261 ORTHO05D006180 2.9e-116 422.5 300 69.0
PSO675G0151 Papaver somniferum HOM05D005261 ORTHO05D006180 1.2e-114 417.2 330 61.8
CDE02G3063 Ceratophyllum demersum HOM05D005261 ORTHO05D006180 6.1e-114 414.8 313 66.8
TWI56G1213 Tripterygium wilfordii HOM05D005261 ORTHO05D006180 3.0e-113 412.5 289 70.9
Os02g0750500 Oryza sativa ssp. japonica HOM05D005261 ORTHO05D006180 8.8e-113 411.0 309 63.8
SEGI_02326 Sequoiadendron giganteum HOM05D005261 ORTHO05D006180 1.5e-112 410.2 325 62.2
Zm00001eb255040 Zea mays HOM05D005261 ORTHO05D006180 2.2e-111 406.4 308 64.6
Nn5g28978 Nelumbo nucifera HOM05D005261 ORTHO05D006180 7.0e-110 401.4 280 70.7
Gohir.A06G039700 Gossypium hirsutum HOM05D005261 ORTHO05D006180 9.1e-110 401.0 356 60.4
SMO361G0461 Selaginella moellendorffii HOM05D005261 ORTHO05D006180 5.9e-109 398.3 286 67.1
Mapoly0189s0001 Marchantia polymorpha HOM05D005261 ORTHO05D006180 2.2e-108 396.4 318 62.3
Potri.002G091300 Populus trichocarpa HOM05D005261 ORTHO05D006180 8.5e-108 394.4 339 59.9
SHI24797 Sapria himalayana HOM05D000002 ORTHO05D000001 1.1e-107 394.0 309 63.4
TAR625G1239 Trochodendron aralioides HOM05D005261 ORTHO05D006180 1.5e-107 393.7 332 62.0
AUR62034370 Chenopodium quinoa HOM05D005261 ORTHO05D006180 1.9e-107 393.3 283 68.2
AagrBONN_evm.TU.Sc2ySwM_228.1177 Anthoceros agrestis HOM05D005261 ORTHO05D006180 4.2e-107 392.1 316 62.0
Peaxi162Scf00756g00436 Petunia axillaris HOM05D005261 ORTHO05D006180 4.2e-107 392.1 309 64.4
HPP92_001925 Vanilla planifolia HOM05D005261 ORTHO05D006180 4.2e-107 392.1 307 62.2
AUR62022337 Chenopodium quinoa HOM05D005261 ORTHO05D006180 5.5e-107 391.7 283 68.6
SalBow8G1448 Salvia bowleyana HOM05D005261 ORTHO05D006180 1.8e-105 386.7 392 55.1
Oeu020872.1 Olea europaea HOM05D005261 ORTHO05D006180 4.0e-105 385.6 299 67.6
AUR62033704 Chenopodium quinoa HOM05D005261 ORTHO05D006180 5.2e-105 385.2 286 68.5
AUR62036786 Chenopodium quinoa HOM05D005261 ORTHO05D006180 2.0e-104 383.3 286 68.5
ATR0564G365 Amborella trichopoda HOM05D005261 ORTHO05D006180 2.0e-101 373.2 316 61.4
Pp3c8_16200 Physcomitrium patens HOM05D005261 ORTHO05D006180 6.8e-97 358.2 353 53.0
SHI53236 Sapria himalayana HOM05D005261 ORTHO05D006180 2.4e-94 349.7 317 57.4
Hma1.2p1_0276F.1_g111370 Hydrangea macrophylla HOM05D005261 ORTHO05D006180 1.2e-85 320.9 190 80.5
Lj3C845T19 Lonicera japonica HOM05D005261 ORTHO05D006180 1.3e-84 317.4 189 80.4
SHI35611 Sapria himalayana HOM05D005261 ORTHO05D006180 8.6e-84 314.7 275 60.0
ECA247G1584 Erigeron canadensis HOM05D000230 ORTHO05D006180 1.1e-83 314.3 230 70.0
Lalb_Chr17g0344051 Lupinus albus HOM05D005261 ORTHO05D006180 6.8e-81 305.1 256 62.5
CBR_g15981 Chara braunii HOM05D005261 ORTHO05D006180 5.0e-76 288.9 355 46.2
COL.COLO4_16503 Corchorus olitorius HOM05D005261 ORTHO05D006180 4.0e-57 226.1 189 64.6
SHI34852 Sapria himalayana HOM05D005261 ORTHO05D006180 2.6e-56 223.4 277 48.4
PRCOL_00005291 Prasinoderma coloniale HOM05D005261 ORTHO05D006180 1.1e-54 218.0 295 42.7
SHI20620 Sapria himalayana HOM05D005261 ORTHO05D006180 1.2e-53 214.5 242 50.8
SHI34844 Sapria himalayana HOM05D005261 ORTHO05D006180 3.0e-52 209.9 279 45.9
SHI43763 Sapria himalayana HOM05D005261 ORTHO05D006180 9.9e-48 194.9 134 69.4
SHI46120 Sapria himalayana HOM05D005261 ORTHO05D006180 6.4e-47 192.2 134 69.4
SHI53472 Sapria himalayana HOM05D005261 ORTHO05D006180 1.1e-43 181.4 161 59.0
SHI32317 Sapria himalayana HOM05D005261 ORTHO05D006180 1.9e-43 180.6 307 36.8
Oeu017307.1 Olea europaea HOM05D005261 ORTHO05D006180 3.6e-42 176.4 117 75.2
SHI52923 Sapria himalayana HOM05D005261 ORTHO05D006180 3.4e-40 169.9 161 56.5
Cre04.g224002 Chlamydomonas reinhardtii HOM05D005261 ORTHO05D006180 1.4e-38 164.5 167 49.7
Rhsim10G0118000 Rhododendron simsii HOM05D005261 ORTHO05D006180 7.1e-38 162.2 205 47.3
SHI54958 Sapria himalayana HOM05D005261 ORTHO05D006180 6.0e-37 159.1 106 72.6
MCO14G461 Micromonas commoda HOM05D005261 ORTHO05D006180 2.0e-32 144.1 297 35.0
SHI49977 Sapria himalayana HOM05D005261 ORTHO05D006180 1.3e-31 141.4 167 46.1
SHI53189 Sapria himalayana HOM05D005261 ORTHO05D006180 8.4e-31 138.7 161 52.8
SHI49044 Sapria himalayana HOM05D005261 ORTHO05D006180 8.7e-28 128.6 127 55.9
SHI51067 Sapria himalayana HOM05D005261 ORTHO05D006180 9.3e-22 108.6 139 46.0
PGSC0003DMG401027564 Solanum tuberosum HOM05D001663 ORTHO05D003186 2.1e-21 107.5 70 71.4
Lj3A845G93 Lonicera japonica HOM05D005261 ORTHO05D006180 4.6e-21 106.3 56 87.5
Rhsim13G0124000 Rhododendron simsii HOM05D005261 ORTHO05D006180 7.9e-21 105.5 157 45.2
SHI52089 Sapria himalayana HOM05D005261 ORTHO05D006180 1.8e-20 104.4 140 45.0
SHI51747 Sapria himalayana HOM05D005261 ORTHO05D006180 2.5e-19 100.5 140 43.6
SHI41608 Sapria himalayana HOM05D005261 ORTHO05D006180 1.7e-15 87.8 134 42.5
ClCG11G007990 Citrullus lanatus HOM05D005261 ORTHO05D006180 6.5e-07 59.3 32 71.9
SHI50342 Sapria himalayana HOM05D005261 ORTHO05D006180 8.5e-07 58.9 31 87.1


User provided reference genes

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