Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold129G34191 Striga asiatica HOM05D004485 ORTHO05D005485 6.0e-212 740.7 413 100.0
Migut.K00530 Erythranthe guttata HOM05D004485 ORTHO05D005485 5.1e-171 604.7 396 87.6
QL02p042072 Quercus lobata HOM05D004485 ORTHO05D005485 2.5e-165 585.9 380 84.2
Dinv36695 Davidia involucrata HOM05D004485 ORTHO05D005485 3.2e-165 585.5 380 84.7
Gorai.004G281700 Gossypium raimondii HOM05D004485 ORTHO05D005485 8.8e-163 577.4 396 81.1
Gohir.D08G263700 Gossypium hirsutum HOM05D004485 ORTHO05D005485 3.3e-162 575.5 396 80.8
Prupe.7G221400 Prunus persica HOM05D004485 ORTHO05D005485 3.3e-162 575.5 380 82.6
MD15G1195100 Malus domestica HOM05D004485 ORTHO05D005485 7.4e-162 574.3 380 81.6
MSTRG.26380 Avicennia marina HOM05D004485 ORTHO05D005485 2.2e-161 572.8 382 85.1
CSS0002032 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 1.4e-160 570.1 380 82.4
Glyma.01G008900 Glycine max HOM05D004485 ORTHO05D005485 1.4e-160 570.1 380 81.8
Actinidia09445 Actinidia chinensis HOM05D004485 ORTHO05D005485 1.8e-160 569.7 380 82.4
Glyma.16G077500 Glycine max HOM05D004485 ORTHO05D005485 5.3e-160 568.2 380 81.8
Atru.chr7.1446 Acer truncatum HOM05D004485 ORTHO05D005485 1.5e-159 566.6 381 82.4
CiPaw.03G226100 Carya illinoinensis HOM05D004485 ORTHO05D005485 2.2e-158 562.8 380 81.8
Manes.16G110100 Manihot esculenta HOM05D004485 ORTHO05D005485 2.2e-158 562.8 380 80.8
Hma1.2p1_0571F.1_g180870 Hydrangea macrophylla HOM05D004485 ORTHO05D005485 2.9e-158 562.4 380 81.6
MD02G1064300 Malus domestica HOM05D004485 ORTHO05D005485 3.8e-158 562.0 380 81.1
CANSAT56G2449 Cannabis sativa HOM05D004485 ORTHO05D005485 5.0e-158 561.6 380 81.6
Thecc.09G101900 Theobroma cacao HOM05D004485 ORTHO05D005485 5.0e-158 561.6 380 81.8
Nn8g39096 Nelumbo nucifera HOM05D004485 ORTHO05D005485 1.9e-157 559.7 380 81.1
Solyc12g008390.3 Solanum lycopersicum HOM05D004485 ORTHO05D005485 1.9e-157 559.7 380 81.8
Sopen12g003350 Solanum pennellii HOM05D004485 ORTHO05D005485 1.9e-157 559.7 380 81.8
TAR624G1325 Trochodendron aralioides HOM05D004485 ORTHO05D005485 1.9e-157 559.7 380 80.8
Sabra18G0074900 Salix brachista HOM05D004485 ORTHO05D005485 3.2e-157 558.9 382 80.9
Ciclev10007632m.g Citrus clementina HOM05D004485 ORTHO05D005485 7.2e-157 557.8 380 80.3
Duzib168G0844 Durio zibethinus HOM05D004485 ORTHO05D005485 7.2e-157 557.8 380 80.8
Sc08g0007920 Simmondsia chinensis HOM05D004485 ORTHO05D005485 6.1e-156 554.7 396 78.8
Potri.018G086600 Populus trichocarpa HOM05D004485 ORTHO05D005485 1.4e-155 553.5 379 80.5
CsaV3_2G001970 Cucumis sativus L. HOM05D004485 ORTHO05D005485 3.9e-155 552.0 381 80.1
Sed0011847 Sechium edule HOM05D004485 ORTHO05D005485 5.1e-155 551.6 380 79.7
Nitab4.5_0013389g0010 Nicotiana tabacum HOM05D004485 ORTHO05D005485 2.0e-154 549.7 420 75.7
GSVIVG01015314001 Vitis vinifera HOM05D004485 ORTHO05D005485 2.0e-154 549.7 380 80.0
Lalb_Chr14g0371821 Lupinus albus HOM05D004485 ORTHO05D005485 3.3e-154 548.9 396 77.8
MELO3C004583.2 Cucumis melo HOM05D004485 ORTHO05D005485 4.4e-154 548.5 381 79.5
Gohir.A06G066600 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.3e-153 547.0 380 79.2
EL10Ac8g18398 Beta vulgaris HOM05D004485 ORTHO05D005485 1.7e-153 546.6 396 77.5
CiPaw.04G158800 Carya illinoinensis HOM05D004485 ORTHO05D005485 2.2e-153 546.2 393 78.6
Gohir.A08G242800 Gossypium hirsutum HOM05D004485 ORTHO05D005485 3.7e-153 545.4 396 78.3
Actinidia17528 Actinidia chinensis HOM05D004485 ORTHO05D005485 4.8e-153 545.0 380 79.5
CSS0009570 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 1.2e-151 540.4 380 79.2
Eucgr.C01004 Eucalyptus grandis HOM05D004485 ORTHO05D005485 2.9e-150 535.8 380 77.6
TWI34G0799 Tripterygium wilfordii HOM05D004485 ORTHO05D005485 2.9e-150 535.8 396 77.8
FAN19G2910 Fragaria x ananassa HOM05D004485 ORTHO05D005485 6.5e-150 534.6 380 78.2
Thhalv10001922m.g Eutrema salsugineum HOM05D004485 ORTHO05D005485 8.5e-150 534.3 396 75.8
PSO210G4150 Papaver somniferum HOM05D004485 ORTHO05D005485 5.5e-149 531.6 380 77.6
BolC9t54403H Brassica oleracea HOM05D004485 ORTHO05D005485 2.1e-148 529.6 380 76.8
ECA236G0540 Erigeron canadensis HOM05D004485 ORTHO05D005485 2.7e-148 529.3 380 77.6
Gohir.D06G065100 Gossypium hirsutum HOM05D004485 ORTHO05D005485 3.6e-148 528.9 380 78.2
Duzib187G1416 Durio zibethinus HOM05D004485 ORTHO05D005485 4.7e-148 528.5 380 77.9
A09p12650 Brassica napus HOM05D004485 ORTHO05D005485 6.1e-148 528.1 380 76.8
BraA09t36912Z Brassica rapa HOM05D004485 ORTHO05D005485 6.1e-148 528.1 380 76.8
C09p15010 Brassica napus HOM05D004485 ORTHO05D005485 8.0e-148 527.7 380 76.6
Haze_25812 Corylus avellana HOM05D004485 ORTHO05D005485 8.8e-147 524.2 360 82.2
Lalb_Chr24g0397331 Lupinus albus HOM05D004485 ORTHO05D005485 1.1e-146 523.9 396 75.3
Oeu053166.1 Olea europaea HOM05D004485 ORTHO05D005485 2.8e-145 519.2 380 78.9
AL3G48250 Arabidopsis lyrata HOM05D004485 ORTHO05D005485 1.6e-143 513.5 380 74.7
AT2G19950 Arabidopsis thaliana HOM05D004485 ORTHO05D005485 2.7e-143 512.7 396 73.0
BcaNung04089 Brassica carinata HOM05D004485 ORTHO05D005485 3.5e-143 512.3 380 75.5
Peaxi162Scf00665g00331 Petunia axillaris HOM05D004485 ORTHO05D005485 3.8e-142 508.8 381 76.6
CAN.G1642.10 Capsicum annuum HOM05D004485 ORTHO05D005485 8.5e-142 507.7 380 76.3
PSO210G3171 Papaver somniferum HOM05D004485 ORTHO05D005485 1.5e-141 506.9 380 75.3
HPP92_005563 Vanilla planifolia HOM05D004485 ORTHO05D005485 1.5e-141 506.9 387 73.1
Carub.0003s3420 Capsella rubella HOM05D004485 ORTHO05D005485 5.5e-141 505.0 380 73.7
Psat1g046640 Pisum sativum HOM05D004485 ORTHO05D005485 1.2e-140 503.8 380 74.2
AUR62021427 Chenopodium quinoa HOM05D004485 ORTHO05D005485 1.0e-139 500.7 409 70.2
Os01g0744400 Oryza sativa ssp. japonica HOM05D004485 ORTHO05D005485 1.0e-139 500.7 396 71.7
Lsat_1_v5_gn_8_96840 Lactuca sativa HOM05D004485 ORTHO05D005485 1.8e-139 500.0 419 69.2
unitig_899.g15433 Utricularia gibba HOM05D004485 ORTHO05D005485 1.8e-139 500.0 396 73.2
Zm00001eb153530 Zea mays HOM05D004485 ORTHO05D005485 8.8e-139 497.7 396 71.7
MBI07_g22518_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 2.0e-138 496.5 380 73.7
ClCG11G002190 Citrullus lanatus HOM05D004485 ORTHO05D005485 2.2e-137 493.0 389 72.2
Lj2g0014691 Lotus japonicus HOM05D004485 ORTHO05D005485 3.7e-137 492.3 380 73.7
Zm00001eb371090 Zea mays HOM05D004485 ORTHO05D005485 1.1e-136 490.7 396 70.5
Phvul.004G170300 Phaseolus vulgaris HOM05D004485 ORTHO05D005485 3.1e-136 489.2 380 72.6
ATR0705G155 Amborella trichopoda HOM05D004485 ORTHO05D005485 1.6e-135 486.9 381 71.9
VMungo0464G1472 Vigna mungo HOM05D004485 ORTHO05D005485 1.6e-135 486.9 380 72.1
vmacro10859 Vaccinium macrocarpon HOM05D004485 ORTHO05D005485 4.5e-135 485.3 345 80.6
PGR102G0995 Punica granatum HOM05D004485 ORTHO05D005485 1.7e-134 483.4 380 72.6
COL.COLO4_34764 Corchorus olitorius HOM05D004485 ORTHO05D005485 2.9e-134 482.6 367 74.7
Nitab4.5_0000566g0170 Nicotiana tabacum HOM05D004485 ORTHO05D005485 1.1e-133 480.7 388 73.7
Rhsim05G0040900 Rhododendron simsii HOM05D004485 ORTHO05D005485 1.9e-133 479.9 380 73.2
Aa31LG8G16840 Aethionema arabicum HOM05D004485 ORTHO05D005485 2.1e-132 476.5 392 69.9
arahy.Tifrunner.gnm1.ann1.N3ID59 Arachis hypogaea HOM05D004485 ORTHO05D005485 1.5e-130 470.3 380 71.1
Gorai.010G076200 Gossypium raimondii HOM05D004485 ORTHO05D005485 2.8e-129 466.1 409 67.0
CARHR110390 Cardamine hirsuta HOM05D004485 ORTHO05D005485 1.8e-128 463.4 383 69.2
arahy.Tifrunner.gnm1.ann1.8771PM Arachis hypogaea HOM05D004485 ORTHO05D005485 2.7e-127 459.5 406 66.5
Aqoxy7G03881 Aquilegia oxysepala HOM05D004485 ORTHO05D005485 5.9e-127 458.4 381 69.6
Ah.14g083300 Amaranthus hybridus HOM05D004485 ORTHO05D005485 2.3e-126 456.4 403 66.0
RcHm_v2.0_Chr2g0091661 Rosa chinensis HOM05D004485 ORTHO05D005485 5.0e-126 455.3 380 70.3
CDE04G3494 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 7.3e-125 451.4 380 67.6
FAN26G2333 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.8e-123 446.8 380 69.5
FvH4_1g05970 Fragaria vesca HOM05D004485 ORTHO05D005485 4.0e-123 445.7 380 68.9
FAN26G0748 Fragaria x ananassa HOM05D004485 ORTHO05D005485 4.0e-123 445.7 380 69.2
HanXRQChr12g0358161 Helianthus annuus HOM05D004485 ORTHO05D005485 2.6e-122 443.0 382 67.8
SEGI_40884 Sequoiadendron giganteum HOM05D004485 ORTHO05D005485 7.5e-122 441.4 381 65.6
BcaC04g22803 Brassica carinata HOM05D004485 ORTHO05D005485 3.7e-121 439.1 313 79.6
Ca_25562_v3 Cicer arietinum L. HOM05D004485 ORTHO05D005485 8.3e-121 438.0 380 68.2
FAN28G2435 Fragaria x ananassa HOM05D004485 ORTHO05D005485 2.4e-120 436.4 390 67.2
Medtr6g088595 Medicago truncatula HOM05D004485 ORTHO05D005485 3.5e-119 432.6 380 66.8
TPR.G21387 Trifolium pratense HOM05D004485 ORTHO05D005485 2.3e-118 429.9 380 66.3
THA.LOC104820040 Tarenaya hassleriana HOM05D004485 ORTHO05D005485 2.1e-116 423.3 380 66.3
arahy.Tifrunner.gnm1.ann1.96JC9B Arachis hypogaea HOM05D004485 ORTHO05D005485 4.4e-114 415.6 399 63.4
Sp3g33270 Schrenkiella parvula HOM05D004485 ORTHO05D005485 1.3e-113 414.1 380 64.7
MBI01_g35400_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 5.4e-112 408.7 479 55.3
FAN23G2550 Fragaria x ananassa HOM05D004485 ORTHO05D005485 7.3e-109 398.3 390 62.8
arahy.Tifrunner.gnm1.ann1.TC5UZA Arachis hypogaea HOM05D004485 ORTHO05D005485 8.1e-108 394.8 399 60.9
AUR62010900 Chenopodium quinoa HOM05D004485 ORTHO05D005485 3.5e-103 379.4 378 62.4
Cc06_g10330 Coffea canephora HOM05D004485 ORTHO05D005485 1.7e-94 350.5 243 81.9
Oeu064192.1 Olea europaea HOM05D004485 ORTHO05D005485 3.3e-93 346.3 228 83.8
AagrBONN_evm.TU.Sc2ySwM_368.430 Anthoceros agrestis HOM05D004485 ORTHO05D005485 1.3e-84 317.8 381 53.3
CDE02G0772 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 4.9e-81 305.8 231 74.9
Hund29368 Selenicereus undatus HOM05D004485 ORTHO05D005485 3.5e-79 299.7 217 78.8
Hund29369 Selenicereus undatus HOM05D004485 ORTHO05D005485 3.5e-79 299.7 217 78.8
Actinidia39785 Actinidia chinensis HOM05D004485 ORTHO05D005485 9.0e-75 285.0 183 81.4
Potri.006G164350 Populus trichocarpa HOM05D004485 ORTHO05D005485 1.5e-66 257.7 172 80.2
Hund28808 Selenicereus undatus HOM05D004485 ORTHO05D005485 1.3e-65 254.6 183 76.0
Hund28810 Selenicereus undatus HOM05D004485 ORTHO05D005485 1.3e-65 254.6 183 76.0
MBI07_g30871_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 1.8e-62 244.2 185 71.4
Cc06_g10340 Coffea canephora HOM05D004485 ORTHO05D005485 2.4e-59 233.8 154 81.8
SMO356G0242 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 4.5e-58 229.6 407 43.0
CBR_g39203 Chara braunii HOM05D004485 ORTHO05D005485 1.3e-52 211.5 381 39.9
Oeu064194.1 Olea europaea HOM05D004485 ORTHO05D005485 1.2e-47 194.9 138 79.7
Actinidia39786 Actinidia chinensis HOM05D004485 ORTHO05D005485 2.6e-45 187.2 138 76.1
Sc08g0007940 Simmondsia chinensis HOM05D004485 ORTHO05D005485 1.2e-34 151.8 225 49.3
Cpa.g.sc40.65 Carica papaya HOM05D004485 ORTHO05D005485 4.5e-34 149.8 90 81.1
SHI02696 Sapria himalayana HOM05D004485 ORTHO05D005485 1.3e-33 148.3 154 60.4
BcaC06g36663 Brassica carinata HOM05D004485 ORTHO05D005485 1.5e-32 144.8 243 42.4
Cpa.g.sc40.64 Carica papaya HOM05D004485 ORTHO05D005485 3.0e-30 137.1 86 86.0
SMO140G0037 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 6.7e-30 136.0 407 33.7
arahy.Tifrunner.gnm1.ann1.SL9UG3 Arachis hypogaea HOM05D004485 ORTHO05D005485 4.4e-29 133.3 91 79.1
DCAR_012046 Daucus carota HOM05D004485 ORTHO05D005485 1.7e-28 131.3 94 76.6
Gohir.D04G126400 Gossypium hirsutum HOM05D004485 ORTHO05D005485 4.7e-23 113.2 70 84.3
Gohir.D05G357440 Gossypium hirsutum HOM05D004485 ORTHO05D005485 4.7e-23 113.2 70 84.3
Gohir.D05G357788 Gossypium hirsutum HOM05D004485 ORTHO05D005485 4.7e-23 113.2 70 84.3
Cpa.g.sc40.63 Carica papaya HOM05D004485 ORTHO05D005485 8.0e-23 112.5 162 51.9
SalBow3G4580 Salvia bowleyana HOM05D004485 ORTHO05D005485 1.0e-22 112.1 71 78.9
Gorai.003G091600 Gossypium raimondii HOM05D004485 ORTHO05D005485 4.0e-22 110.2 72 79.2
PGR102G1041 Punica granatum HOM05D004485 ORTHO05D005485 1.2e-21 108.6 87 72.4
Gohir.D01G081701 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.2e-20 104.4 70 82.9
Rhsim05G0040800 Rhododendron simsii HOM05D000602 ORTHO05D001147 1.4e-19 101.7 162 46.9
A07p00710 Brassica napus HOM05D004485 ORTHO05D005485 4.7e-15 86.7 254 33.5
HPP92_005577 Vanilla planifolia HOM05D004485 ORTHO05D005485 3.0e-14 84.0 65 67.7
C07p01440 Brassica napus HOM05D004485 ORTHO05D005485 3.1e-11 73.9 70 61.4
Cre12.g517500 Chlamydomonas reinhardtii HOM05D004485 ORTHO05D005485 1.2e-10 72.0 328 27.4
ATR0693G380 Amborella trichopoda HOM05D004485 ORTHO05D005485 3.5e-10 70.5 75 56.0
HanXRQChr10g0316161 Helianthus annuus HOM05D004485 ORTHO05D005485 9.5e-08 62.4 50 70.0
HanXRQChr03g0072061 Helianthus annuus HOM05D004485 ORTHO05D005485 3.0e-06 57.4 40 65.0


User provided reference genes

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