Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold128G34119 Striga asiatica HOM05D005061 ORTHO05D006001 7.6e-153 543.9 291 100.0
SGA_v2.0_scaffold90G27899 Striga asiatica HOM05D005061 ORTHO05D006001 1.0e-85 320.9 195 92.3
SalBow8G4870 Salvia bowleyana HOM05D005061 ORTHO05D006001 4.7e-62 242.3 191 70.7
Migut.G00717 Erythranthe guttata HOM05D005061 ORTHO05D006001 2.7e-57 226.5 195 65.6
MSTRG.9809 Avicennia marina HOM05D005061 ORTHO05D006001 5.0e-56 222.2 194 67.5
unitig_26.g9510 Utricularia gibba HOM05D005061 ORTHO05D006001 3.0e-48 196.4 178 62.9
Dinv38211 Davidia involucrata HOM05D005061 ORTHO05D006001 4.7e-46 189.1 192 58.3
Migut.N00403 Erythranthe guttata HOM05D005061 ORTHO05D006001 5.2e-45 185.7 195 58.5
MSTRG.4232 Avicennia marina HOM05D005061 ORTHO05D006001 1.2e-44 184.5 194 57.7
CSS0003459 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 1.2e-44 184.5 186 57.0
Cc03_g08040 Coffea canephora HOM05D005061 ORTHO05D006001 1.2e-44 184.5 198 54.5
Lj8A15T45 Lonicera japonica HOM05D005061 ORTHO05D006001 6.4e-43 178.7 176 58.0
Hma1.2p1_0383F.1_g140630 Hydrangea macrophylla HOM05D005061 ORTHO05D006001 4.1e-42 176.0 194 53.1
ECA247G1905 Erigeron canadensis HOM05D005061 ORTHO05D006001 6.0e-41 172.2 185 54.1
Manes.02G208300 Manihot esculenta HOM05D005061 ORTHO05D006001 5.1e-40 169.1 169 54.4
Manes.10G081400 Manihot esculenta HOM05D005061 ORTHO05D006001 8.6e-40 168.3 169 54.4
TAR636G2803 Trochodendron aralioides HOM05D005061 ORTHO05D006001 1.6e-38 164.1 173 53.2
Gohir.D10G140500 Gossypium hirsutum HOM05D005061 ORTHO05D006001 2.8e-38 163.3 180 53.9
COL.COLO4_20183 Corchorus olitorius HOM05D005061 ORTHO05D006001 3.6e-38 162.9 178 54.5
TAR624G0493 Trochodendron aralioides HOM05D002455 ORTHO05D006001 6.2e-38 162.2 165 55.8
Psat6g003280 Pisum sativum HOM05D005061 ORTHO05D006001 1.1e-37 161.4 168 53.0
TPR.G26387 Trifolium pratense HOM05D005061 ORTHO05D006001 1.8e-37 160.6 168 53.0
Prupe.1G159300 Prunus persica HOM05D005061 ORTHO05D006001 6.8e-37 158.7 173 52.6
Gohir.A10G126200 Gossypium hirsutum HOM05D005061 ORTHO05D006001 2.0e-36 157.1 180 52.8
Solyc05g053730.3 Solanum lycopersicum HOM05D005061 ORTHO05D006001 2.6e-36 156.8 200 49.0
Sopen05g032210 Solanum pennellii HOM05D005061 ORTHO05D006001 2.6e-36 156.8 200 49.0
TPR.G1371 Trifolium pratense HOM05D005061 ORTHO05D006001 2.6e-36 156.8 168 52.4
Cpa.g.sc170.49 Carica papaya HOM05D005061 ORTHO05D006001 5.8e-36 155.6 178 52.2
PGR042G2541 Punica granatum HOM05D005061 ORTHO05D006001 9.9e-36 154.8 192 48.4
Lj1g0014719 Lotus japonicus HOM05D005061 ORTHO05D006001 1.3e-35 154.5 168 50.6
Lalb_Chr01g0000091 Lupinus albus HOM05D005061 ORTHO05D006001 1.3e-35 154.5 166 50.0
Gorai.011G156100 Gossypium raimondii HOM05D005061 ORTHO05D006001 1.7e-35 154.1 174 52.9
Rhsim02G0060400 Rhododendron simsii HOM05D005061 ORTHO05D006001 2.9e-35 153.3 243 41.6
Lj1g0023949 Lotus japonicus HOM05D005061 ORTHO05D006001 6.4e-35 152.1 168 50.0
PGSC0003DMG400015756 Solanum tuberosum HOM05D005061 ORTHO05D006001 6.4e-35 152.1 200 48.5
PSO541G4502 Papaver somniferum HOM05D005061 ORTHO05D006001 1.1e-34 151.4 154 53.9
PSO675G5536 Papaver somniferum HOM05D005061 ORTHO05D006001 1.4e-34 151.0 154 53.2
Thhalv10004918m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 3.2e-34 149.8 155 56.1
Oeu006186.1 Olea europaea HOM05D005061 ORTHO05D006001 3.2e-34 149.8 108 79.6
Glyma.08G364400 Glycine max HOM05D005061 ORTHO05D006001 7.1e-34 148.7 169 52.7
A06p38500 Brassica napus HOM05D005061 ORTHO05D006001 9.3e-34 148.3 190 48.4
Peaxi162Scf00423g00316 Petunia axillaris HOM05D005061 ORTHO05D006001 1.2e-33 147.9 199 47.2
CANSAT78G0571 Cannabis sativa HOM05D005061 ORTHO05D006001 1.6e-33 147.5 155 58.1
CDE07G0811 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 2.7e-33 146.7 171 49.7
Carub.0008s0903 Capsella rubella HOM05D005061 ORTHO05D006001 3.5e-33 146.4 151 57.6
MD14G1080700 Malus domestica HOM05D005061 ORTHO05D006001 3.5e-33 146.4 191 46.6
BcaC06g30707 Brassica carinata HOM05D005061 ORTHO05D006001 4.6e-33 146.0 178 51.7
Glyma.18G297700 Glycine max HOM05D005061 ORTHO05D006001 4.6e-33 146.0 161 52.2
RcHm_v2.0_Chr4g0414321 Rosa chinensis HOM05D005061 ORTHO05D006001 6.0e-33 145.6 172 52.9
CDE04G1543 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 7.8e-33 145.2 166 50.6
HanXRQChr13g0420931 Helianthus annuus HOM05D005061 ORTHO05D006001 7.8e-33 145.2 190 47.4
MD12G1086100 Malus domestica HOM05D005061 ORTHO05D006001 7.8e-33 145.2 173 49.7
Aa31LG11G8230 Aethionema arabicum HOM05D005061 ORTHO05D006001 1.3e-32 144.4 180 51.1
Eucgr.G02600 Eucalyptus grandis HOM05D005061 ORTHO05D006001 1.3e-32 144.4 155 54.2
BraA06t26765Z Brassica rapa HOM05D005061 ORTHO05D006001 2.3e-32 143.7 190 47.9
FAN22G0582 Fragaria x ananassa HOM05D005061 ORTHO05D006001 2.3e-32 143.7 179 50.3
FAN07G0218 Fragaria x ananassa HOM05D005061 ORTHO05D006001 5.1e-32 142.5 179 50.8
CARHR182460 Cardamine hirsuta HOM05D005061 ORTHO05D006001 6.6e-32 142.1 155 54.8
EL10Ac9g22415 Beta vulgaris HOM05D005061 ORTHO05D006001 8.7e-32 141.7 180 46.7
Duzib212G0867 Durio zibethinus HOM05D005061 ORTHO05D006001 1.1e-31 141.4 173 49.1
Medtr1g025570 Medicago truncatula HOM05D005061 ORTHO05D006001 1.1e-31 141.4 169 49.1
AT5G49210 Arabidopsis thaliana HOM05D005061 ORTHO05D006001 2.5e-31 140.2 155 53.5
BcaNung02589 Brassica carinata HOM05D005061 ORTHO05D006001 2.5e-31 140.2 190 47.4
C07p39760 Brassica napus HOM05D005061 ORTHO05D006001 2.5e-31 140.2 190 47.4
Cpa.g.sc150.53 Carica papaya HOM05D005061 ORTHO05D006001 5.6e-31 139.0 188 48.4
AL8G22790 Arabidopsis lyrata HOM05D005061 ORTHO05D006001 7.3e-31 138.7 151 55.0
FvH4_4g13570 Fragaria vesca HOM05D005061 ORTHO05D006001 7.3e-31 138.7 179 49.7
FAN17G0047 Fragaria x ananassa HOM05D005061 ORTHO05D006001 2.1e-30 137.1 179 49.2
BcaC03g17706 Brassica carinata HOM05D005061 ORTHO05D006001 3.6e-30 136.3 168 50.0
C02p57130 Brassica napus HOM05D005061 ORTHO05D006001 3.6e-30 136.3 168 50.0
AUR62006500 Chenopodium quinoa HOM05D005061 ORTHO05D006001 1.4e-29 134.4 192 43.8
CAN.G765.25 Capsicum annuum HOM05D005061 ORTHO05D006001 4.0e-29 132.9 195 43.6
QL07p041720 Quercus lobata HOM05D005061 ORTHO05D006001 5.3e-29 132.5 193 47.7
EL10Ac9g22416 Beta vulgaris HOM05D005061 ORTHO05D006001 6.9e-29 132.1 175 45.1
Medtr7g407030 Medicago truncatula HOM05D005061 ORTHO05D006001 6.9e-29 132.1 168 47.6
Nitab4.5_0003502g0080 Nicotiana tabacum HOM05D005061 ORTHO05D006001 6.9e-29 132.1 199 43.2
Atru.chr4.1296 Acer truncatum HOM05D005061 ORTHO05D006001 9.0e-29 131.7 162 48.1
HPP92_021062 Vanilla planifolia HOM05D005061 ORTHO05D006001 9.0e-29 131.7 181 44.2
QL01p037004 Quercus lobata HOM05D005061 ORTHO05D006001 1.5e-28 131.0 161 50.9
Psat3g206160 Pisum sativum HOM05D005061 ORTHO05D006001 5.8e-28 129.0 168 46.4
vmacro15554 Vaccinium macrocarpon HOM05D005061 ORTHO05D006001 1.7e-27 127.5 250 38.4
Hund18997 Selenicereus undatus HOM05D005061 ORTHO05D006001 2.9e-27 126.7 192 42.2
Os11g0148600 Oryza sativa ssp. japonica HOM05D005061 ORTHO05D006001 3.8e-27 126.3 154 50.0
Aqoxy1G01140 Aquilegia oxysepala HOM05D005061 ORTHO05D006001 4.9e-27 125.9 153 51.0
Ciclev10005973m.g Citrus clementina HOM05D005061 ORTHO05D006001 8.4e-27 125.2 177 43.5
BcaB07g34140 Brassica carinata HOM05D005061 ORTHO05D006001 5.4e-26 122.5 190 44.7
Phvul.008G004900 Phaseolus vulgaris HOM05D005061 ORTHO05D006001 7.1e-26 122.1 169 45.6
AUR62025033 Chenopodium quinoa HOM05D005061 ORTHO05D006001 9.3e-26 121.7 186 43.5
Oeu025020.1 Olea europaea HOM05D005061 ORTHO05D006001 2.1e-25 120.6 143 53.8
Sp2g19580 Schrenkiella parvula HOM05D005061 ORTHO05D006001 4.6e-25 119.4 155 48.4
Ca_04063_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 7.8e-25 118.6 168 42.3
Ca_04069_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 7.8e-25 118.6 168 42.3
BraA02t08777Z Brassica rapa HOM05D005061 ORTHO05D006001 1.7e-24 117.5 168 45.8
Sc19g0007290 Simmondsia chinensis HOM05D005061 ORTHO05D006001 3.9e-24 116.3 182 41.2
THA.LOC104808705 Tarenaya hassleriana HOM05D005061 ORTHO05D006001 5.1e-24 115.9 183 45.9
Nitab4.5_0002260g0170 Nicotiana tabacum HOM05D005061 ORTHO05D006001 1.5e-23 114.4 199 39.7
A02p37930 Brassica napus HOM05D005061 ORTHO05D006001 3.3e-23 113.2 168 44.6
BolC2t11785H Brassica oleracea HOM05D005061 ORTHO05D006001 3.3e-23 113.2 197 41.6
Haze_11630 Corylus avellana HOM05D005061 ORTHO05D006001 5.6e-23 112.5 182 45.1
Actinidia23412 Actinidia chinensis HOM05D005061 ORTHO05D006001 1.6e-22 110.9 198 40.9
Zm00001eb092840 Zea mays HOM05D005061 ORTHO05D006001 1.6e-22 110.9 160 43.8
DCAR_026627 Daucus carota HOM05D005061 ORTHO05D006001 2.8e-22 110.2 123 51.2
Sed0002608 Sechium edule HOM05D005061 ORTHO05D006001 1.4e-21 107.8 196 38.8
GSVIVG01020921001 Vitis vinifera HOM05D005061 ORTHO05D006001 3.1e-21 106.7 174 40.8
VMungo1383G0426 Vigna mungo HOM05D005061 ORTHO05D006001 4.0e-21 106.3 167 42.5
Thecc.04G199600 Theobroma cacao HOM05D005061 ORTHO05D006001 1.3e-19 101.3 168 41.1
Cfa014943 Carpinus fangiana HOM05D005061 ORTHO05D006001 2.2e-19 100.5 179 43.0
Dinv27216 Davidia involucrata HOM05D005061 ORTHO05D006001 1.9e-18 97.4 177 37.9
BcaB07g34141 Brassica carinata HOM05D005061 ORTHO05D006001 2.4e-18 97.1 190 39.5
SEGI_31023 Sequoiadendron giganteum HOM05D005061 ORTHO05D006001 4.2e-18 96.3 153 35.9
arahy.Tifrunner.gnm1.ann1.B38FIW Arachis hypogaea HOM05D005061 ORTHO05D006001 7.1e-18 95.5 153 39.9
arahy.Tifrunner.gnm1.ann1.V03Z72 Arachis hypogaea HOM05D005061 ORTHO05D006001 7.1e-18 95.5 153 39.9
MELO3C006306.2 Cucumis melo HOM05D005061 ORTHO05D006001 3.5e-17 93.2 193 36.3
BcaB04g19598 Brassica carinata HOM05D005061 ORTHO05D006001 3.9e-16 89.7 155 41.9
Atru.chr4.1292 Acer truncatum HOM05D005061 ORTHO05D006001 1.9e-15 87.4 109 48.6
Sabra16G0200700 Salix brachista HOM05D005061 ORTHO05D006001 4.3e-15 86.3 173 38.2
TWI34G0245 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 1.6e-14 84.3 177 37.9
Ah.09g228330 Amaranthus hybridus HOM05D005061 ORTHO05D006001 6.2e-14 82.4 176 36.4
Lsat_1_v5_gn_2_46320 Lactuca sativa HOM05D005061 ORTHO05D006001 8.1e-14 82.0 192 35.4
Potri.001G317300 Populus trichocarpa HOM05D005061 ORTHO05D006001 8.1e-14 82.0 169 37.9
arahy.Tifrunner.gnm1.ann1.IKZ5YQ Arachis hypogaea HOM05D000225 ORTHO05D001595 2.4e-13 80.5 103 49.5
BolC7t44502H Brassica oleracea HOM05D005061 ORTHO05D006001 1.2e-12 78.2 135 40.7
CiPaw.01G118900 Carya illinoinensis HOM05D005061 ORTHO05D006001 1.3e-11 74.7 199 34.2
arahy.Tifrunner.gnm1.ann1.FDW9Z4 Arachis hypogaea HOM05D005061 ORTHO05D006001 4.9e-11 72.8 173 33.5
arahy.Tifrunner.gnm1.ann1.SQKG7P Arachis hypogaea HOM05D005061 ORTHO05D006001 4.9e-11 72.8 103 48.5
Sc19g0007210 Simmondsia chinensis HOM05D005061 ORTHO05D006001 4.9e-11 72.8 68 55.9
CSS0041532 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 6.5e-11 72.4 172 34.9
CSS0044809 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 6.5e-11 72.4 172 34.9
Lsat_1_v5_gn_6_60821 Lactuca sativa HOM05D005061 ORTHO05D006001 8.4e-11 72.0 196 32.7
FAN12G0303 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.6e-09 67.8 52 67.3
arahy.Tifrunner.gnm1.ann1.16QZ2B Arachis hypogaea HOM05D001164 ORTHO05D026902 2.7e-09 67.0 141 40.4
ATR0745G004 Amborella trichopoda HOM05D005061 ORTHO05D006001 1.3e-08 64.7 161 32.3
FvH4_4g13580 Fragaria vesca HOM05D005061 ORTHO05D006001 1.8e-08 64.3 159 35.2
FAN12G1864 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.8e-08 64.3 159 35.2
CsaV3_3G010880 Cucumis sativus L. HOM05D005061 ORTHO05D006001 3.9e-08 63.2 138 35.5
arahy.Tifrunner.gnm1.ann1.KB0HQZ Arachis hypogaea HOM05D005061 ORTHO05D006001 1.1e-07 61.6 103 43.7
TWI34G1372 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 1.5e-07 61.2 173 33.5
arahy.Tifrunner.gnm1.ann1.W60CWR Arachis hypogaea HOM05D005061 ORTHO05D006001 2.5e-07 60.5 125 40.0
arahy.Tifrunner.gnm1.ann1.125U9W Arachis hypogaea HOM05D005061 ORTHO05D006001 8.2e-06 55.5 104 41.3


User provided reference genes

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