Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold127G34055 Striga asiatica HOM05D006504 ORTHO05D007867 4.0e-98 361.7 218 100.0
MSTRG.22579 Avicennia marina HOM05D006504 ORTHO05D007867 1.2e-33 147.5 155 67.1
Migut.I01030 Erythranthe guttata HOM05D006504 ORTHO05D007867 3.8e-32 142.5 149 73.2
PGR102G0591 Punica granatum HOM05D006504 ORTHO05D007867 3.6e-22 109.4 143 64.3
Lsat_1_v5_gn_5_135100 Lactuca sativa HOM05D006504 ORTHO05D007867 3.9e-21 105.9 149 64.4
GSVIVG01016863001 Vitis vinifera HOM05D006504 ORTHO05D007867 1.5e-20 104.0 160 61.2
CSS0018438 Camellia sinensis var. sinensis HOM05D006504 ORTHO05D007867 2.0e-20 103.6 156 65.4
Eucgr.F03135 Eucalyptus grandis HOM05D006504 ORTHO05D007867 2.6e-20 103.2 178 55.1
Sopen02g018660 Solanum pennellii HOM05D006504 ORTHO05D007867 5.7e-20 102.1 165 58.8
CAN.G675.25 Capsicum annuum HOM05D006504 ORTHO05D007867 9.7e-20 101.3 170 53.5
Gohir.D05G137200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 2.8e-19 99.8 159 61.0
Gohir.A05G135200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 3.7e-19 99.4 159 61.0
Gorai.009G141600 Gossypium raimondii HOM05D006504 ORTHO05D007867 3.7e-19 99.4 159 61.0
Rhsim12G0206400 Rhododendron simsii HOM05D006504 ORTHO05D007867 8.2e-19 98.2 165 60.6
RcHm_v2.0_Chr2g0143361 Rosa chinensis HOM05D006504 ORTHO05D007867 8.2e-19 98.2 153 61.4
Solyc02g069520.2 Solanum lycopersicum HOM05D006504 ORTHO05D007867 8.2e-19 98.2 175 55.4
Hma1.2p1_0388F.1_g142400 Hydrangea macrophylla HOM05D006504 ORTHO05D007867 1.4e-18 97.4 152 58.6
Cpa.g.sc25.42 Carica papaya HOM05D006504 ORTHO05D007867 1.8e-18 97.1 149 63.8
HanXRQChr12g0360501 Helianthus annuus HOM05D006504 ORTHO05D007867 1.8e-18 97.1 149 61.1
MD09G1192700 Malus domestica HOM05D006504 ORTHO05D007867 5.3e-18 95.5 166 58.4
Gohir.A10G058600 Gossypium hirsutum HOM05D006504 ORTHO05D007867 1.6e-17 94.0 164 47.0
Aa31LG10G870 Aethionema arabicum HOM05D006504 ORTHO05D007867 2.0e-17 93.6 185 45.4
Ciclev10026403m.g Citrus clementina HOM05D006504 ORTHO05D007867 3.5e-17 92.8 151 57.0
Potri.003G037200 Populus trichocarpa HOM05D006504 ORTHO05D007867 3.5e-17 92.8 164 59.8
FAN02G0681 Fragaria x ananassa HOM05D006504 ORTHO05D007867 7.7e-17 91.7 153 52.9
Duzib235G1492 Durio zibethinus HOM05D006504 ORTHO05D007867 1.7e-16 90.5 154 58.4
FvH4_6g33500 Fragaria vesca HOM05D006504 ORTHO05D007867 1.7e-16 90.5 167 56.3
FAN14G5793 Fragaria x ananassa HOM05D006504 ORTHO05D007867 1.7e-16 90.5 167 55.7
Prupe.3G049000 Prunus persica HOM05D006504 ORTHO05D007867 1.7e-16 90.5 166 56.6
FAN09G0296 Fragaria x ananassa HOM05D006504 ORTHO05D007867 2.2e-16 90.1 153 39.9
Atru.chr1.3757 Acer truncatum HOM05D006504 ORTHO05D007867 5.0e-16 89.0 175 57.7
Cc05_g02540 Coffea canephora HOM05D006504 ORTHO05D007867 6.5e-16 88.6 148 59.5
Thecc.06G112500 Theobroma cacao HOM05D006504 ORTHO05D007867 1.5e-15 87.4 143 56.6
MELO3C030574.2 Cucumis melo HOM05D006504 ORTHO05D007867 1.9e-15 87.0 77 62.3
VMungo0331G1418 Vigna mungo HOM05D006504 ORTHO05D007867 2.5e-15 86.7 186 53.2
Nn8g38837 Nelumbo nucifera HOM05D006504 ORTHO05D007867 3.2e-15 86.3 159 46.5
Nn8g38840 Nelumbo nucifera HOM05D006504 ORTHO05D007867 3.2e-15 86.3 159 46.5
Aqoxy5G00309 Aquilegia oxysepala HOM05D006504 ORTHO05D007867 5.5e-15 85.5 77 61.0
CsaV3_3G043850 Cucumis sativus L. HOM05D006504 ORTHO05D007867 5.5e-15 85.5 77 61.0
TWI31G0577 Tripterygium wilfordii HOM05D006504 ORTHO05D007867 5.5e-15 85.5 148 60.8
TAR383G0025 Trochodendron aralioides HOM05D006504 ORTHO05D007867 1.2e-14 84.3 77 61.0
Manes.11G025900 Manihot esculenta HOM05D006504 ORTHO05D007867 1.6e-14 84.0 154 58.4
CiPaw.01G224400 Carya illinoinensis HOM05D006504 ORTHO05D007867 2.1e-14 83.6 77 59.7
Manes.04G140200 Manihot esculenta HOM05D006504 ORTHO05D007867 2.1e-14 83.6 154 56.5
PSO210G6889 Papaver somniferum HOM05D006504 ORTHO05D007867 2.1e-14 83.6 66 65.2
PSO210G7829 Papaver somniferum HOM05D006504 ORTHO05D007867 2.1e-14 83.6 66 65.2
A08p01030 Brassica napus HOM05D001264 ORTHO05D007867 2.7e-14 83.2 219 43.8
BraA08t32155Z Brassica rapa HOM05D006504 ORTHO05D007867 2.7e-14 83.2 219 43.8
Glyma.08G192500 Glycine max HOM05D006504 ORTHO05D007867 2.7e-14 83.2 162 50.0
Glyma.07G009300 Glycine max HOM05D006504 ORTHO05D007867 3.6e-14 82.8 198 46.5
Nn5g26799 Nelumbo nucifera HOM05D006504 ORTHO05D007867 6.1e-14 82.0 148 52.0
BcaB04g17003 Brassica carinata HOM05D006504 ORTHO05D007867 1.0e-13 81.3 221 41.6
Lalb_Chr25g0280741 Lupinus albus HOM05D006504 ORTHO05D007867 1.8e-13 80.5 77 57.1
Gorai.011G064600 Gossypium raimondii HOM05D006504 ORTHO05D007867 2.3e-13 80.1 142 49.3
THA.LOC104822636 Tarenaya hassleriana HOM05D006504 ORTHO05D007867 2.3e-13 80.1 201 44.8
TPR.G37598 Trifolium pratense HOM05D006504 ORTHO05D007867 2.3e-13 80.1 169 53.3
arahy.Tifrunner.gnm1.ann1.2CYW67 Arachis hypogaea HOM05D006504 ORTHO05D007867 3.0e-13 79.7 66 62.1
arahy.Tifrunner.gnm1.ann1.S1QT98 Arachis hypogaea HOM05D006504 ORTHO05D007867 3.0e-13 79.7 66 62.1
arahy.Tifrunner.gnm1.ann1.Y1EG1J Arachis hypogaea HOM05D006504 ORTHO05D007867 3.0e-13 79.7 66 62.1
FAN21G2275 Fragaria x ananassa HOM05D006504 ORTHO05D007867 3.0e-13 79.7 154 57.8
QL05p000665 Quercus lobata HOM05D006504 ORTHO05D007867 3.0e-13 79.7 77 57.1
QL05p000757 Quercus lobata HOM05D006504 ORTHO05D007867 3.0e-13 79.7 77 57.1
Lj5A44T119 Lonicera japonica HOM05D006504 ORTHO05D007867 4.0e-13 79.3 66 60.6
Gohir.D10G060350 Gossypium hirsutum HOM05D006504 ORTHO05D007867 5.2e-13 79.0 65 61.5
Lj3g0009120 Lotus japonicus HOM05D006504 ORTHO05D007867 6.7e-13 78.6 175 49.1
AT1G55080 Arabidopsis thaliana HOM05D006504 ORTHO05D007867 1.5e-12 77.4 66 60.6
CARHR044670 Cardamine hirsuta HOM05D006504 ORTHO05D007867 2.6e-12 76.6 77 54.5
Medtr8g017180 Medicago truncatula HOM05D006504 ORTHO05D007867 3.3e-12 76.3 77 55.8
Peaxi162Scf00195g00313 Petunia axillaris HOM05D006504 ORTHO05D007867 3.3e-12 76.3 170 52.4
AL1G63070 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 4.4e-12 75.9 201 36.8
Carub.0001s4357 Capsella rubella HOM05D006504 ORTHO05D007867 5.7e-12 75.5 66 59.1
C03p92210 Brassica napus HOM05D001264 ORTHO05D007867 7.5e-12 75.1 78 53.8
Os01g0501000 Oryza sativa ssp. japonica HOM05D006504 ORTHO05D007867 7.5e-12 75.1 77 55.8
Zm00001eb066180 Zea mays HOM05D006504 ORTHO05D007867 7.5e-12 75.1 66 62.1
ATR0800G060 Amborella trichopoda HOM05D006504 ORTHO05D007867 1.3e-11 74.3 66 57.6
ECA234G1551 Erigeron canadensis HOM05D000001 ORTHO05D009948 1.3e-11 74.3 66 59.1
Sp1g40740 Schrenkiella parvula HOM05D006504 ORTHO05D007867 1.7e-11 73.9 216 38.0
Psat4g188440 Pisum sativum HOM05D006504 ORTHO05D007867 2.2e-11 73.6 77 53.2
BolC3t21536H Brassica oleracea HOM05D006504 ORTHO05D007867 2.8e-11 73.2 78 52.6
ATR0661G108 Amborella trichopoda HOM05D006504 ORTHO05D007867 3.7e-11 72.8 77 51.9
BcaC01g01455 Brassica carinata HOM05D006504 ORTHO05D007867 6.3e-11 72.0 78 51.3
HPP92_023888 Vanilla planifolia HOM05D006504 ORTHO05D007867 6.3e-11 72.0 146 47.9
CDE04G1380 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 2.4e-10 70.1 154 37.0
vmacro17023 Vaccinium macrocarpon HOM05D006504 ORTHO05D007867 5.3e-10 68.9 56 66.1
CDE06G0601 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 9.1e-10 68.2 152 38.8
SGA_v2.0_scaffold464G52010 Striga asiatica HOM05D006504 ORTHO05D007867 1.6e-09 67.4 34 94.1
Sc12g0010270 Simmondsia chinensis HOM05D006504 ORTHO05D007867 2.0e-09 67.0 55 63.6
Haze_15959 Corylus avellana HOM05D006504 ORTHO05D007867 2.7e-09 66.6 56 62.5
Nitab4.5_0002964g0020 Nicotiana tabacum HOM05D006504 ORTHO05D007867 2.7e-09 66.6 137 56.9
COL.COLO4_30670 Corchorus olitorius HOM05D006504 ORTHO05D007867 4.5e-09 65.9 68 55.9
Ah.08g216230 Amaranthus hybridus HOM05D006504 ORTHO05D007867 1.0e-08 64.7 59 54.2
A05p17670 Brassica napus HOM05D006504 ORTHO05D007867 1.7e-08 63.9 61 55.7
PGSC0003DMG400021202 Solanum tuberosum HOM05D006504 ORTHO05D007867 2.2e-08 63.5 58 58.6
C06p15780 Brassica napus HOM05D001264 ORTHO05D001167 2.9e-08 63.2 61 55.7
BolC6t36770H Brassica oleracea HOM05D006504 ORTHO05D007867 2.9e-08 63.2 61 55.7
ClCG07G013760 Citrullus lanatus HOM05D006504 ORTHO05D007867 2.9e-08 63.2 56 58.9
BraA05t20659Z Brassica rapa HOM05D006504 ORTHO05D007867 8.5e-08 61.6 61 54.1
BcaB03g13872 Brassica carinata HOM05D006504 ORTHO05D007867 1.5e-07 60.8 60 55.0
QL05p000679 Quercus lobata HOM05D006504 ORTHO05D007867 1.9e-07 60.5 56 57.1
QL05p000687 Quercus lobata HOM05D006504 ORTHO05D007867 1.9e-07 60.5 56 57.1
TPR.G19289 Trifolium pratense HOM05D006504 ORTHO05D007867 1.9e-07 60.5 140 55.0
arahy.Tifrunner.gnm1.ann1.IBA4C6 Arachis hypogaea HOM05D006504 ORTHO05D007867 2.5e-07 60.1 56 57.1
Cfa003580 Carpinus fangiana HOM05D006504 ORTHO05D007867 2.5e-07 60.1 67 52.2
HPP92_023833 Vanilla planifolia HOM05D006504 ORTHO05D007867 3.2e-07 59.7 62 45.2
Mapoly0004s0244 Marchantia polymorpha HOM05D006504 ORTHO05D007867 9.4e-07 58.2 64 50.0
SalBow6G4228 Salvia bowleyana HOM05D006504 ORTHO05D007867 9.4e-07 58.2 35 77.1
SalBow6G4685 Salvia bowleyana HOM05D006504 ORTHO05D007867 9.4e-07 58.2 35 77.1
unitig_748.g8021 Utricularia gibba HOM05D000360 ORTHO05D000234 9.4e-07 58.2 38 68.4
BcaC08g44177 Brassica carinata HOM05D001264 ORTHO05D001167 1.6e-06 57.4 61 52.5
Carub.0001s2784 Capsella rubella HOM05D006504 ORTHO05D007867 2.1e-06 57.0 58 51.7
A07p10460 Brassica napus HOM05D006504 ORTHO05D007867 4.7e-06 55.8 76 43.4
BraA07t28846Z Brassica rapa HOM05D006504 ORTHO05D007867 4.7e-06 55.8 76 43.4
SEGI_28258 Sequoiadendron giganteum HOM05D006504 ORTHO05D007867 4.7e-06 55.8 82 39.0


User provided reference genes

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