Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold127G34034 Striga asiatica HOM05D006846 ORTHO05D008473 4.9e-120 434.5 221 100.0
SGA_v2.0_scaffold127G34033 Striga asiatica HOM05D006846 ORTHO05D008473 3.1e-66 255.8 147 91.8
SGA_v2.0_scaffold64G22040 Striga asiatica HOM05D006846 ORTHO05D008473 7.2e-63 244.6 168 79.2
Migut.H02019 Erythranthe guttata HOM05D006846 ORTHO05D008473 4.2e-47 192.2 146 69.2
MSTRG.14213 Avicennia marina HOM05D006846 ORTHO05D008473 2.3e-45 186.4 149 65.8
Nitab4.5_0007368g0030 Nicotiana tabacum HOM05D006846 ORTHO05D008473 9.8e-44 181.0 151 62.9
Nitab4.5_0007474g0050 Nicotiana tabacum HOM05D006846 ORTHO05D008473 3.7e-43 179.1 149 62.4
Hma1.2p1_0013F.1_g007970 Hydrangea macrophylla HOM05D006846 ORTHO05D008473 1.8e-42 176.8 118 72.9
GSVIVG01017604001 Vitis vinifera HOM05D006846 ORTHO05D008473 5.4e-42 175.3 152 57.9
Actinidia18502 Actinidia chinensis HOM05D006846 ORTHO05D008473 7.0e-42 174.9 137 62.8
PSO339G5299 Papaver somniferum HOM05D006846 ORTHO05D008473 7.0e-42 174.9 149 58.4
Manes.03G210800 Manihot esculenta HOM05D006846 ORTHO05D008473 2.0e-41 173.3 130 66.9
GSVIVG01017661001 Vitis vinifera HOM05D006846 ORTHO05D008473 2.0e-41 173.3 147 59.2
Prupe.1G108100 Prunus persica HOM05D006846 ORTHO05D008473 5.9e-41 171.8 121 69.4
Eucgr.H04110 Eucalyptus grandis HOM05D006846 ORTHO05D008473 1.0e-40 171.0 142 62.0
Peaxi162Scf00579g00010 Petunia axillaris HOM05D006846 ORTHO05D008473 2.3e-40 169.9 133 66.2
PSO384G1587 Papaver somniferum HOM05D006846 ORTHO05D008473 3.8e-40 169.1 149 56.4
QL06p041421 Quercus lobata HOM05D006846 ORTHO05D008473 6.6e-40 168.3 143 57.3
MD13G1143600 Malus domestica HOM05D006846 ORTHO05D008473 8.6e-40 167.9 125 69.6
VMungo1309G3101 Vigna mungo HOM05D006846 ORTHO05D008473 1.1e-39 167.5 154 58.4
Thecc.04G310600 Theobroma cacao HOM05D006846 ORTHO05D008473 1.9e-39 166.8 121 66.1
Duzib212G0339 Durio zibethinus HOM05D006846 ORTHO05D008473 3.3e-39 166.0 127 65.4
FvH4_4g21260 Fragaria vesca HOM05D006846 ORTHO05D008473 3.3e-39 166.0 125 64.8
FAN07G1325 Fragaria x ananassa HOM05D006846 ORTHO05D008473 3.3e-39 166.0 125 64.8
Lj6A699T67 Lonicera japonica HOM05D006846 ORTHO05D008473 3.3e-39 166.0 147 59.9
Phvul.009G219800 Phaseolus vulgaris HOM05D006846 ORTHO05D008473 3.3e-39 166.0 152 59.2
THA.LOC104821808 Tarenaya hassleriana HOM05D006846 ORTHO05D008473 7.3e-39 164.9 145 58.6
Thhalv10012405m.g Eutrema salsugineum HOM05D006846 ORTHO05D008473 9.5e-39 164.5 147 59.2
Os12g0182800 Oryza sativa ssp. japonica HOM05D006846 ORTHO05D008473 1.2e-38 164.1 123 66.7
AT1G48170 Arabidopsis thaliana HOM05D006846 ORTHO05D008473 1.6e-38 163.7 148 57.4
CARHR037810 Cardamine hirsuta HOM05D006846 ORTHO05D008473 1.6e-38 163.7 144 59.0
Gohir.D09G242700 Gossypium hirsutum HOM05D006846 ORTHO05D008473 1.6e-38 163.7 136 63.2
Gorai.006G266400 Gossypium raimondii HOM05D006846 ORTHO05D008473 1.6e-38 163.7 136 63.2
BcaC08g43012 Brassica carinata HOM05D006846 ORTHO05D008473 2.1e-38 163.3 141 60.3
C06p02670 Brassica napus HOM05D006846 ORTHO05D008473 2.1e-38 163.3 141 60.3
Sc23g0000700 Simmondsia chinensis HOM05D006846 ORTHO05D008473 2.1e-38 163.3 129 62.0
Sopen06g018550 Solanum pennellii HOM05D006846 ORTHO05D008473 2.1e-38 163.3 150 57.3
Glyma.15G188800 Glycine max HOM05D006846 ORTHO05D008473 2.8e-38 162.9 152 58.6
PGR004G1594 Punica granatum HOM05D006846 ORTHO05D008473 2.8e-38 162.9 151 53.6
PGR033G0007 Punica granatum HOM05D006846 ORTHO05D008473 2.8e-38 162.9 151 53.6
Solyc06g053470.3 Solanum lycopersicum HOM05D006846 ORTHO05D008473 2.8e-38 162.9 150 57.3
AL1G54740 Arabidopsis lyrata HOM05D006846 ORTHO05D008473 4.7e-38 162.2 146 59.6
PGSC0003DMG400016299 Solanum tuberosum HOM05D006846 ORTHO05D008473 4.7e-38 162.2 150 56.7
Carub.0005s0005 Capsella rubella HOM05D006846 ORTHO05D008473 6.1e-38 161.8 143 57.3
RcHm_v2.0_Chr4g0426881 Rosa chinensis HOM05D006846 ORTHO05D008473 6.1e-38 161.8 125 63.2
Sp3g23740 Schrenkiella parvula HOM05D006846 ORTHO05D008473 6.1e-38 161.8 141 58.9
BolC6t35393H Brassica oleracea HOM05D006846 ORTHO05D008473 8.0e-38 161.4 141 58.9
Lj6g0016026 Lotus japonicus HOM05D006846 ORTHO05D008473 8.0e-38 161.4 148 58.8
Rhsim04G0247300 Rhododendron simsii HOM05D006846 ORTHO05D008473 8.0e-38 161.4 145 56.6
A06p04640 Brassica napus HOM05D006846 ORTHO05D008473 1.0e-37 161.0 141 58.2
BraA06t23668Z Brassica rapa HOM05D006846 ORTHO05D008473 1.0e-37 161.0 141 58.2
Hund16859 Selenicereus undatus HOM05D006846 ORTHO05D008473 1.0e-37 161.0 122 64.8
Aqoxy1G00358 Aquilegia oxysepala HOM05D006846 ORTHO05D008473 1.8e-37 160.2 122 67.2
Aa31LG10G5560 Aethionema arabicum HOM05D006846 ORTHO05D008473 2.3e-37 159.8 143 60.1
Carub.0001s3726 Capsella rubella HOM05D003832 ORTHO05D004365 2.3e-37 159.8 145 59.3
CARHR290870 Cardamine hirsuta HOM05D006846 ORTHO05D008473 2.3e-37 159.8 120 66.7
vmacro08003 Vaccinium macrocarpon HOM05D006846 ORTHO05D008473 2.3e-37 159.8 170 50.0
MELO3C003207.2 Cucumis melo HOM05D006846 ORTHO05D008473 4.0e-37 159.1 121 64.5
Ciclev10007018m.g Citrus clementina HOM05D006846 ORTHO05D008473 5.2e-37 158.7 187 48.7
Dinv29523 Davidia involucrata HOM05D006846 ORTHO05D008473 5.2e-37 158.7 107 70.1
BcaB07g33786 Brassica carinata HOM05D006846 ORTHO05D008473 1.2e-36 157.5 145 56.6
AUR62019042 Chenopodium quinoa HOM05D006846 ORTHO05D008473 1.5e-36 157.1 118 64.4
Sed0003831 Sechium edule HOM05D006846 ORTHO05D008473 1.5e-36 157.1 121 64.5
AUR62027881 Chenopodium quinoa HOM05D006846 ORTHO05D008473 2.0e-36 156.8 138 58.7
Medtr2g046100 Medicago truncatula HOM05D006846 ORTHO05D008473 2.0e-36 156.8 146 58.2
CAN.G136.4 Capsicum annuum HOM05D006846 ORTHO05D008473 2.6e-36 156.4 136 59.6
Psat1g017720 Pisum sativum HOM05D006846 ORTHO05D008473 3.4e-36 156.0 148 57.4
EL10Ac1g01060 Beta vulgaris HOM05D006846 ORTHO05D008473 5.7e-36 155.2 138 59.4
HanXRQChr09g0246471 Helianthus annuus HOM05D006846 ORTHO05D008473 5.7e-36 155.2 152 54.6
CsaV3_4G025810 Cucumis sativus L. HOM05D006846 ORTHO05D008473 7.5e-36 154.8 117 63.2
Zm00001eb359370 Zea mays HOM05D006846 ORTHO05D008473 7.5e-36 154.8 121 63.6
CiPaw.01G161800 Carya illinoinensis HOM05D006846 ORTHO05D008473 1.3e-35 154.1 118 62.7
Potri.008G099700 Populus trichocarpa HOM05D006846 ORTHO05D008473 1.7e-35 153.7 153 52.9
SEGI_09291 Sequoiadendron giganteum HOM05D006846 ORTHO05D008473 1.7e-35 153.7 148 52.7
Lalb_Chr07g0181811 Lupinus albus HOM05D006846 ORTHO05D008473 6.4e-35 151.8 145 56.6
CDE12G0609 Ceratophyllum demersum HOM05D006846 ORTHO05D008473 8.3e-35 151.4 134 56.7
Cfa015953 Carpinus fangiana HOM05D006846 ORTHO05D008473 1.1e-34 151.0 127 63.0
CANSAT01G2167 Cannabis sativa HOM05D006846 ORTHO05D008473 1.4e-34 150.6 145 56.6
ECA233G5003 Erigeron canadensis HOM05D006846 ORTHO05D008473 1.8e-34 150.2 115 64.3
MBI11_g10320_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 1.8e-34 150.2 156 50.6
SalBow8G5328 Salvia bowleyana HOM05D006846 ORTHO05D008473 1.8e-34 150.2 140 59.3
FAN12G0803 Fragaria x ananassa HOM05D006846 ORTHO05D008473 2.4e-34 149.8 150 53.3
Ca_02363_v3 Cicer arietinum L. HOM05D006846 ORTHO05D008473 4.1e-34 149.1 140 58.6
unitig_744.g24645 Utricularia gibba HOM05D006846 ORTHO05D008473 1.2e-33 147.5 119 63.9
Sabra08G0075400 Salix brachista HOM05D006846 ORTHO05D008473 1.0e-32 144.4 161 48.4
arahy.Tifrunner.gnm1.ann1.BIT0EB Arachis hypogaea HOM05D006846 ORTHO05D008473 3.0e-32 142.9 149 53.7
Cc03_g00240 Coffea canephora HOM05D006846 ORTHO05D008473 3.9e-32 142.5 91 72.5
COL.COLO4_34545 Corchorus olitorius HOM05D005582 ORTHO05D007028 4.3e-31 139.0 90 71.1
TWI73G0996 Tripterygium wilfordii HOM05D006846 ORTHO05D008473 5.6e-31 138.7 105 65.7
HPP92_004479 Vanilla planifolia HOM05D006846 ORTHO05D008473 9.8e-28 127.9 122 55.7
Pp3c9_17660 Physcomitrium patens HOM05D006846 ORTHO05D008473 4.9e-27 125.6 126 52.4
Dinv29521 Davidia involucrata HOM05D006846 ORTHO05D008473 8.3e-27 124.8 104 59.6
Mapoly0021s0070 Marchantia polymorpha HOM05D006846 ORTHO05D008473 2.4e-26 123.2 108 54.6
MD16G1146600 Malus domestica HOM05D006846 ORTHO05D008473 3.2e-26 122.9 121 54.5
Nn4g26496 Nelumbo nucifera HOM05D006846 ORTHO05D008473 1.0e-24 117.9 118 56.8
TPR.G27493 Trifolium pratense HOM05D006846 ORTHO05D008473 1.0e-24 117.9 141 44.0
Gohir.A09G242000 Gossypium hirsutum HOM05D006846 ORTHO05D008473 1.3e-24 117.5 136 52.9
QL11p040346 Quercus lobata HOM05D006846 ORTHO05D008473 3.9e-24 115.9 121 54.5
Haze_00535 Corylus avellana HOM05D006846 ORTHO05D008473 5.0e-24 115.5 127 53.5
MBI18_g09611_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 1.9e-23 113.6 99 56.6
Lsat_1_v5_gn_6_71441 Lactuca sativa HOM05D006846 ORTHO05D008473 4.3e-23 112.5 117 52.1
Haze_00536 Corylus avellana HOM05D006846 ORTHO05D008473 7.3e-23 111.7 133 51.1
TAR365G0638 Trochodendron aralioides HOM05D006846 ORTHO05D008473 9.8e-20 101.3 75 65.3
CSS0050245 Camellia sinensis var. sinensis HOM05D006846 ORTHO05D008473 1.7e-19 100.5 65 72.3
Glyma.09G078800 Glycine max HOM05D006846 ORTHO05D008473 1.7e-19 100.5 66 75.8
arahy.Tifrunner.gnm1.ann1.EYUN0W Arachis hypogaea HOM05D000385 ORTHO05D000269 5.4e-18 95.5 146 41.1
ATR0693G432 Amborella trichopoda HOM05D006846 ORTHO05D008473 7.8e-17 91.7 92 51.1
ClCG04G007450 Citrullus lanatus HOM05D006846 ORTHO05D008473 2.3e-16 90.1 63 69.8
CSS0047848 Camellia sinensis var. sinensis HOM05D006846 ORTHO05D008473 2.8e-14 83.2 52 75.0
Hma1.2p1_0013F.1_g007960 Hydrangea macrophylla HOM05D006846 ORTHO05D008473 4.7e-14 82.4 54 70.4
MBI19_g16347_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 5.2e-13 79.0 94 47.9
Cpa.g.sc146.38 Carica papaya HOM05D006846 ORTHO05D008473 9.9e-12 74.7 48 70.8
Zm00001eb158200 Zea mays HOM05D006846 ORTHO05D008473 8.4e-11 71.6 86 45.3
AagrBONN_evm.TU.Sc2ySwM_117.777 Anthoceros agrestis HOM05D006846 ORTHO05D008473 5.1e-08 62.4 59 49.2
Cre04.g216300 Chlamydomonas reinhardtii HOM05D006846 ORTHO05D008473 8.6e-08 61.6 101 33.7


User provided reference genes

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