Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold127G34013 Striga asiatica HOM05D005102 ORTHO05D006090 2.1e-142 509.2 294 100.0
SGA_v2.0_scaffold454G51888 Striga asiatica HOM05D005102 ORTHO05D006090 1.4e-122 443.4 294 84.4
MSTRG.9850 Avicennia marina HOM05D005102 ORTHO05D006090 8.9e-101 370.9 304 77.0
Migut.G00562 Erythranthe guttata HOM05D005102 ORTHO05D006090 4.6e-97 358.6 301 71.8
SGA_v2.0_scaffold193G40717 Striga asiatica HOM05D005102 ORTHO05D006090 1.5e-95 353.6 211 91.0
Nitab4.5_0001041g0140 Nicotiana tabacum HOM05D005102 ORTHO05D006090 4.0e-93 345.5 301 68.4
Nitab4.5_0005154g0050 Nicotiana tabacum HOM05D005102 ORTHO05D006090 3.5e-89 332.4 336 61.9
Oeu047122.2 Olea europaea HOM05D005102 ORTHO05D006090 2.0e-84 316.6 387 53.7
COL.COLO4_15983 Corchorus olitorius HOM05D005102 ORTHO05D006090 3.4e-84 315.8 300 64.0
Duzib052G0859 Durio zibethinus HOM05D005102 ORTHO05D006090 9.8e-84 314.3 300 63.7
Solyc09g090860.4 Solanum lycopersicum HOM05D005102 ORTHO05D006090 9.8e-84 314.3 299 65.9
Gohir.A02G043600 Gossypium hirsutum HOM05D005102 ORTHO05D006090 1.3e-83 313.9 300 62.0
Gorai.005G054400 Gossypium raimondii HOM05D005102 ORTHO05D006090 1.7e-83 313.5 300 62.3
Manes.03G102500 Manihot esculenta HOM05D005102 ORTHO05D006090 2.2e-83 313.2 301 63.5
Sopen09g033820 Solanum pennellii HOM05D005102 ORTHO05D006090 2.2e-83 313.2 301 65.4
Thecc.04G266700 Theobroma cacao HOM05D005102 ORTHO05D006090 1.9e-82 310.1 300 63.0
Actinidia37761 Actinidia chinensis HOM05D005102 ORTHO05D006090 4.1e-82 308.9 300 62.3
THA.LOC104808740 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 6.0e-81 305.1 301 62.5
CAN.G812.17 Capsicum annuum HOM05D005102 ORTHO05D006090 7.8e-81 304.7 300 63.0
HanXRQChr01g0011201 Helianthus annuus HOM05D005102 ORTHO05D006090 6.6e-80 301.6 293 64.8
Dinv27121 Davidia involucrata HOM05D005102 ORTHO05D006090 1.1e-79 300.8 265 66.4
Ciclev10005541m.g Citrus clementina HOM05D005102 ORTHO05D006090 2.5e-79 299.7 302 61.9
Cc03_g06480 Coffea canephora HOM05D005102 ORTHO05D006090 3.3e-79 299.3 306 60.5
TPR.G17506 Trifolium pratense HOM05D005102 ORTHO05D006090 5.6e-79 298.5 296 61.8
Ca_11361_v3 Cicer arietinum L. HOM05D005102 ORTHO05D006090 9.5e-79 297.7 301 60.8
CiPaw.01G176900 Carya illinoinensis HOM05D005102 ORTHO05D006090 1.2e-78 297.4 300 60.7
Prupe.5G230500 Prunus persica HOM05D005102 ORTHO05D006090 2.1e-78 296.6 300 59.0
AT3G24315 Arabidopsis thaliana HOM05D005102 ORTHO05D006090 6.2e-78 295.0 299 60.9
Psat7g046400 Pisum sativum HOM05D005102 ORTHO05D006090 1.1e-77 294.3 301 59.5
CARHR100410 Cardamine hirsuta HOM05D005102 ORTHO05D006090 1.8e-77 293.5 301 59.1
AL3G39760 Arabidopsis lyrata HOM05D005102 ORTHO05D006090 2.3e-77 293.1 299 60.5
Glyma.15G125200 Glycine max HOM05D005102 ORTHO05D006090 4.0e-77 292.4 303 59.4
Phvul.006G133300 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 8.9e-77 291.2 301 58.1
Cfa014795 Carpinus fangiana HOM05D005102 ORTHO05D006090 1.2e-76 290.8 300 60.7
Thhalv10002630m.g Eutrema salsugineum HOM05D005102 ORTHO05D006090 1.2e-76 290.8 296 59.5
Atru.chr12.1207 Acer truncatum HOM05D005102 ORTHO05D006090 1.5e-76 290.4 298 59.7
Aqoxy5G00133 Aquilegia oxysepala HOM05D005102 ORTHO05D006090 2.0e-76 290.0 276 62.0
Lj6g0009036 Lotus japonicus HOM05D005102 ORTHO05D006090 2.0e-76 290.0 301 59.5
Lj3g0001784 Lotus japonicus HOM05D005102 ORTHO05D006090 2.6e-76 289.7 301 59.5
Aa31LG8G11040 Aethionema arabicum HOM05D005102 ORTHO05D006090 3.4e-76 289.3 302 57.6
Psat1g170520 Pisum sativum HOM05D005102 ORTHO05D006090 3.4e-76 289.3 302 59.6
Nn3g19843 Nelumbo nucifera HOM05D005102 ORTHO05D006090 4.4e-76 288.9 302 59.6
Haze_11479 Corylus avellana HOM05D005102 ORTHO05D006090 5.8e-76 288.5 300 59.7
FAN13G1436 Fragaria x ananassa HOM05D005102 ORTHO05D006090 5.8e-76 288.5 300 59.3
Glyma.09G019100 Glycine max HOM05D005102 ORTHO05D006090 5.8e-76 288.5 302 58.6
CSS0043447 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 7.6e-76 288.1 300 61.0
RcHm_v2.0_Chr7g0178711 Rosa chinensis HOM05D005102 ORTHO05D006090 7.6e-76 288.1 303 62.7
FAN08G3625 Fragaria x ananassa HOM05D005102 ORTHO05D006090 9.9e-76 287.7 300 59.0
CSS0019941 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 1.3e-75 287.3 300 61.0
BcaB06g26613 Brassica carinata HOM05D005102 ORTHO05D006090 1.7e-75 287.0 298 60.1
FAN04G2658 Fragaria x ananassa HOM05D005102 ORTHO05D006090 2.9e-75 286.2 300 58.7
Rhsim01G0226300 Rhododendron simsii HOM05D005102 ORTHO05D006090 3.8e-75 285.8 323 57.0
THA.LOC104810405 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 3.8e-75 285.8 262 64.9
Eucgr.K00416 Eucalyptus grandis HOM05D005102 ORTHO05D006090 4.9e-75 285.4 265 64.2
FAN18G4219 Fragaria x ananassa HOM05D005102 ORTHO05D006090 4.9e-75 285.4 300 58.7
Medtr2g028660 Medicago truncatula HOM05D005102 ORTHO05D006090 6.4e-75 285.0 320 56.9
VMungo0540G0767 Vigna mungo HOM05D005102 ORTHO05D006090 1.1e-74 284.3 265 62.3
FvH4_5g17100 Fragaria vesca HOM05D005102 ORTHO05D006090 1.4e-74 283.9 300 58.3
TWI09G0526 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 2.4e-74 283.1 300 60.0
QL08p018871 Quercus lobata HOM05D005102 ORTHO05D006090 3.2e-74 282.7 294 59.5
EL10Ac3g06678 Beta vulgaris HOM05D005102 ORTHO05D006090 5.4e-74 282.0 299 57.9
BraA07t28587Z Brassica rapa HOM05D005102 ORTHO05D006090 7.1e-74 281.6 298 59.7
DCAR_030764 Daucus carota HOM05D005102 ORTHO05D006090 1.2e-73 280.8 302 58.9
arahy.Tifrunner.gnm1.ann1.Z186RR Arachis hypogaea HOM05D005102 ORTHO05D006090 2.1e-73 280.0 326 54.9
A07p08000 Brassica napus HOM05D005102 ORTHO05D006090 2.1e-73 280.0 298 59.7
Sp3g22120 Schrenkiella parvula HOM05D005102 ORTHO05D006090 3.5e-73 279.3 298 58.4
Ah.10g026170 Amaranthus hybridus HOM05D005102 ORTHO05D006090 4.6e-73 278.9 300 58.0
Carub.0003s2465 Capsella rubella HOM05D005102 ORTHO05D006090 1.0e-72 277.7 294 57.8
Potri.010G064900 Populus trichocarpa HOM05D005102 ORTHO05D006090 1.0e-72 277.7 308 58.4
PGSC0003DMG400001501 Solanum tuberosum HOM05D005102 ORTHO05D006090 1.0e-72 277.7 392 51.0
BolC7t41674H Brassica oleracea HOM05D005102 ORTHO05D006090 1.7e-72 276.9 300 58.0
QL06p021548 Quercus lobata HOM05D005102 ORTHO05D006090 1.7e-72 276.9 294 58.5
BcaC06g35682 Brassica carinata HOM05D005102 ORTHO05D006090 2.3e-72 276.6 300 58.0
C07p12060 Brassica napus HOM05D005102 ORTHO05D006090 2.3e-72 276.6 300 58.0
Sc13g0003090 Simmondsia chinensis HOM05D005102 ORTHO05D006090 6.6e-72 275.0 295 61.4
MD06G1229400 Malus domestica HOM05D005102 ORTHO05D006090 8.6e-72 274.6 299 56.2
CANSAT78G2207 Cannabis sativa HOM05D005102 ORTHO05D006090 1.5e-71 273.9 295 58.3
Lsat_1_v5_gn_1_75501 Lactuca sativa HOM05D005102 ORTHO05D006090 2.5e-71 273.1 274 60.6
Lj6A637G59 Lonicera japonica HOM05D005102 ORTHO05D006090 2.5e-71 273.1 363 50.7
TAR365G0288 Trochodendron aralioides HOM05D005102 ORTHO05D006090 4.3e-71 272.3 306 55.6
C03p53630 Brassica napus HOM05D005102 ORTHO05D006090 1.2e-70 270.8 297 57.2
BcaC01g03326 Brassica carinata HOM05D005102 ORTHO05D006090 1.6e-70 270.4 297 57.2
AUR62018036 Chenopodium quinoa HOM05D005102 ORTHO05D006090 4.7e-70 268.9 299 55.9
GSVIVG01027934001 Vitis vinifera HOM05D005102 ORTHO05D006090 4.7e-70 268.9 304 56.9
BolC3t17623H Brassica oleracea HOM05D005102 ORTHO05D006090 1.3e-67 260.8 305 55.4
Lalb_Chr06g0169571 Lupinus albus HOM05D005102 ORTHO05D006090 1.1e-66 257.7 301 55.8
Gohir.D02G049200 Gossypium hirsutum HOM05D005102 ORTHO05D006090 1.9e-66 256.9 214 68.2
CDE09G0962 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 9.3e-66 254.6 265 57.0
Sabra10G0042100 Salix brachista HOM05D005102 ORTHO05D006090 3.5e-65 252.7 316 53.5
A03p43600 Brassica napus HOM05D005102 ORTHO05D006090 4.6e-65 252.3 302 56.3
Zm00001eb238020 Zea mays HOM05D005102 ORTHO05D006090 5.1e-64 248.8 267 55.8
ATR0787G185 Amborella trichopoda HOM05D005102 ORTHO05D006090 6.6e-64 248.4 268 56.0
SalBow2G1408 Salvia bowleyana HOM05D005102 ORTHO05D006090 6.6e-64 248.4 183 79.8
Sed0020820 Sechium edule HOM05D005102 ORTHO05D006090 1.1e-63 247.7 300 54.3
PSO832G1873 Papaver somniferum HOM05D005102 ORTHO05D006090 2.5e-63 246.5 300 54.3
AUR62015240 Chenopodium quinoa HOM05D005102 ORTHO05D006090 1.3e-62 244.2 299 52.8
Os02g0658900 Oryza sativa ssp. japonica HOM05D005102 ORTHO05D006090 1.6e-62 243.8 267 56.2
PSO302G0040 Papaver somniferum HOM05D005102 ORTHO05D006090 2.8e-62 243.0 299 51.8
Hund22254 Selenicereus undatus HOM05D005102 ORTHO05D006090 6.2e-62 241.9 379 47.2
PSO170G5569 Papaver somniferum HOM05D005102 ORTHO05D006090 3.1e-61 239.6 299 51.5
CDE02G3615 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 1.2e-60 237.7 261 55.2
ClCG06G002570 Citrullus lanatus HOM05D005102 ORTHO05D006090 5.8e-60 235.3 283 54.1
PSO764G0108 Papaver somniferum HOM05D005102 ORTHO05D006090 5.8e-60 235.3 301 53.2
HPP92_021768 Vanilla planifolia HOM05D005102 ORTHO05D006090 9.9e-60 234.6 302 50.7
vmacro04848 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 8.7e-56 221.5 200 68.0
Peaxi162Scf00531g00334 Petunia axillaris HOM05D005102 ORTHO05D006090 1.9e-55 220.3 178 71.9
vmacro20979 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 2.1e-54 216.9 306 50.3
BraA03t13497Z Brassica rapa HOM05D005102 ORTHO05D006090 3.4e-52 209.5 298 50.7
CsaV3_6G008560 Cucumis sativus L. HOM05D005102 ORTHO05D006090 4.9e-51 205.7 245 54.3
MELO3C022272.2 Cucumis melo HOM05D005102 ORTHO05D006090 3.5e-49 199.5 262 51.1
SEGI_01035 Sequoiadendron giganteum HOM05D005102 ORTHO05D006090 4.6e-49 199.1 256 47.3
TWI63G1490 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 3.0e-48 196.4 211 56.9
Cpa.g.sc59.14 Carica papaya HOM05D005102 ORTHO05D006090 4.5e-44 182.6 185 64.3
ECA247G3419 Erigeron canadensis HOM05D005102 ORTHO05D006090 1.0e-43 181.4 180 70.0
Nitab4.5_0002613g0070 Nicotiana tabacum HOM05D005102 ORTHO05D006090 8.7e-40 168.3 149 71.1
AagrBONN_evm.TU.Sc2ySwM_228.1541 Anthoceros agrestis HOM05D005102 ORTHO05D006090 5.0e-35 152.5 253 39.5
AagrBONN_evm.TU.Sc2ySwM_368.1701 Anthoceros agrestis HOM05D005102 ORTHO05D006090 6.5e-35 152.1 253 39.5
Mapoly0019s0137 Marchantia polymorpha HOM05D005102 ORTHO05D006090 1.1e-34 151.4 251 41.8
unitig_748.g8293 Utricularia gibba HOM05D005102 ORTHO05D006090 7.2e-34 148.7 127 65.4
SMO364G0891 Selaginella moellendorffii HOM05D005102 ORTHO05D006090 3.0e-32 143.3 211 41.7
SHI00826 Sapria himalayana HOM05D005102 ORTHO05D006090 3.3e-31 139.8 282 38.3
Zm00001eb048840 Zea mays HOM05D005102 ORTHO05D006090 9.7e-31 138.3 167 52.7
Pp3c27_3370 Physcomitrium patens HOM05D005102 ORTHO05D006090 1.3e-27 127.9 240 34.6
Peaxi162Scf00531g00327 Petunia axillaris HOM05D000868 ORTHO05D000711 3.8e-27 126.3 133 60.2
CBR_g37523 Chara braunii HOM05D005102 ORTHO05D006090 2.1e-25 120.6 225 38.7
arahy.Tifrunner.gnm1.ann1.4HQ694 Arachis hypogaea HOM05D005102 ORTHO05D006090 5.1e-24 115.9 116 61.2
Pp3c16_3280 Physcomitrium patens HOM05D005102 ORTHO05D006090 9.7e-23 111.7 213 35.2
Eucgr.G00566 Eucalyptus grandis HOM05D005102 ORTHO05D006090 1.1e-21 108.2 121 58.7
Dinv30772 Davidia involucrata HOM05D005102 ORTHO05D006090 1.4e-21 107.8 80 76.2
Zm00001eb144710 Zea mays HOM05D005102 ORTHO05D006090 2.4e-21 107.1 179 40.2
Phvul.006G132800 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 1.2e-20 104.8 122 54.1
Zm00001eb188010 Zea mays HOM05D005102 ORTHO05D006090 6.5e-19 99.0 123 45.5
Zm00001eb021120 Zea mays HOM05D005102 ORTHO05D006090 2.6e-15 87.0 110 44.5
Zm00001eb156410 Zea mays HOM05D005102 ORTHO05D006090 5.7e-15 85.9 110 43.6
Zm00001eb291560 Zea mays HOM05D005102 ORTHO05D006090 3.7e-14 83.2 110 43.6
Zm00001eb324110 Zea mays HOM05D005102 ORTHO05D006090 2.0e-12 77.4 69 53.6
Zm00001eb402860 Zea mays HOM05D005102 ORTHO05D006090 8.8e-08 62.0 63 47.6
Zm00001eb049220 Zea mays HOM05D005102 ORTHO05D006090 1.2e-07 61.6 56 50.0
Zm00001eb318660 Zea mays HOM05D005102 ORTHO05D006090 1.2e-07 61.6 56 50.0
Zm00001eb423240 Zea mays HOM05D005102 ORTHO05D006090 1.2e-07 61.6 56 50.0
CiPaw.02G105900 Carya illinoinensis HOM05D005102 ORTHO05D006090 5.7e-07 59.3 99 45.5


User provided reference genes

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