Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold127G34009 Striga asiatica HOM05D006792 ORTHO05D008489 4.0e-113 411.4 198 100.0
SGA_v2.0_scaffold217G42431 Striga asiatica HOM05D006792 ORTHO05D008489 7.8e-109 397.1 198 97.0
Migut.C00611 Erythranthe guttata HOM05D006792 ORTHO05D008489 1.3e-74 283.5 203 69.5
GSVIVG01009569001 Vitis vinifera HOM05D006792 ORTHO05D008489 3.0e-68 262.3 196 65.3
Aqoxy5G01393 Aquilegia oxysepala HOM05D006792 ORTHO05D008489 4.3e-67 258.5 215 61.4
Lj4A777T61 Lonicera japonica HOM05D006792 ORTHO05D008489 2.8e-66 255.8 205 65.4
ClCG08G015590 Citrullus lanatus HOM05D006792 ORTHO05D008489 3.7e-66 255.4 211 63.0
FAN15G1697 Fragaria x ananassa HOM05D006792 ORTHO05D008489 3.7e-66 255.4 209 61.2
SalBow1G1949 Salvia bowleyana HOM05D006792 ORTHO05D008489 3.7e-66 255.4 198 66.2
MELO3C010894.2 Cucumis melo HOM05D006792 ORTHO05D008489 4.8e-66 255.0 210 62.4
FvH4_2g40760 Fragaria vesca HOM05D006792 ORTHO05D008489 4.8e-66 255.0 212 61.8
MD15G1036100 Malus domestica HOM05D006792 ORTHO05D008489 4.8e-66 255.0 204 63.7
SalBow6G5080 Salvia bowleyana HOM05D006792 ORTHO05D008489 4.8e-66 255.0 198 66.2
Actinidia15267 Actinidia chinensis HOM05D006792 ORTHO05D008489 6.2e-66 254.6 203 62.6
Gohir.A06G015700 Gossypium hirsutum HOM05D006792 ORTHO05D008489 8.1e-66 254.2 208 63.9
Gohir.D06G013900 Gossypium hirsutum HOM05D006792 ORTHO05D008489 8.1e-66 254.2 210 63.8
PSO170G4587 Papaver somniferum HOM05D006792 ORTHO05D008489 1.1e-65 253.8 216 59.3
CSS0036679 Camellia sinensis var. sinensis HOM05D006792 ORTHO05D008489 1.4e-65 253.4 216 59.7
CSS0036769 Camellia sinensis var. sinensis HOM05D006792 ORTHO05D008489 1.4e-65 253.4 216 59.7
Dinv35992 Davidia involucrata HOM05D006792 ORTHO05D008489 1.4e-65 253.4 212 60.8
Thecc.08G014600 Theobroma cacao HOM05D006792 ORTHO05D008489 2.4e-65 252.7 211 62.1
TAR381G0050 Trochodendron aralioides HOM05D006792 ORTHO05D008489 2.4e-65 252.7 210 60.5
Sed0017537 Sechium edule HOM05D006792 ORTHO05D008489 4.0e-65 251.9 216 62.0
TAR625G1025 Trochodendron aralioides HOM05D006792 ORTHO05D008489 4.0e-65 251.9 215 58.6
Duzib041G0477 Durio zibethinus HOM05D006792 ORTHO05D008489 5.3e-65 251.5 211 62.1
FAN27G1218 Fragaria x ananassa HOM05D006792 ORTHO05D008489 5.3e-65 251.5 210 61.9
RcHm_v2.0_Chr6g0299831 Rosa chinensis HOM05D006792 ORTHO05D008489 5.3e-65 251.5 208 62.0
Prupe.1G390300 Prunus persica HOM05D006792 ORTHO05D008489 1.2e-64 250.4 212 60.8
Nn5g30170 Nelumbo nucifera HOM05D006792 ORTHO05D008489 1.5e-64 250.0 215 60.5
Rhsim06G0045800 Rhododendron simsii HOM05D006792 ORTHO05D008489 1.5e-64 250.0 215 59.1
DCAR_008785 Daucus carota HOM05D006792 ORTHO05D008489 2.0e-64 249.6 198 63.1
Cfa018502 Carpinus fangiana HOM05D006792 ORTHO05D008489 7.6e-64 247.7 204 61.3
AUR62016018 Chenopodium quinoa HOM05D006792 ORTHO05D008489 1.3e-63 246.9 233 55.4
Eucgr.L00645 Eucalyptus grandis HOM05D006792 ORTHO05D008489 2.2e-63 246.1 216 60.6
Lalb_Chr06g0172721 Lupinus albus HOM05D006792 ORTHO05D008489 2.2e-63 246.1 211 58.8
Atru.chr13.615 Acer truncatum HOM05D006792 ORTHO05D008489 2.9e-63 245.7 208 63.0
AUR62021223 Chenopodium quinoa HOM05D006792 ORTHO05D008489 3.8e-63 245.4 233 54.5
CsaV3_2G028180 Cucumis sativus L. HOM05D006792 ORTHO05D008489 4.9e-63 245.0 210 60.0
CiPaw.15G064100 Carya illinoinensis HOM05D006792 ORTHO05D008489 6.5e-63 244.6 214 60.7
Aa31LG5G9340 Aethionema arabicum HOM05D006792 ORTHO05D008489 8.4e-63 244.2 204 61.8
Ciclev10002498m.g Citrus clementina HOM05D006792 ORTHO05D008489 1.1e-62 243.8 213 60.1
Carub.0006s0578 Capsella rubella HOM05D006792 ORTHO05D008489 1.4e-62 243.4 196 63.3
Potri.014G035300 Populus trichocarpa HOM05D006792 ORTHO05D008489 1.9e-62 243.0 214 57.5
BolC9t59782H Brassica oleracea HOM05D006792 ORTHO05D008489 2.5e-62 242.7 192 62.5
Sp6g36430 Schrenkiella parvula HOM05D006792 ORTHO05D008489 2.5e-62 242.7 193 63.2
A10p29960 Brassica napus HOM05D006792 ORTHO05D008489 3.2e-62 242.3 190 63.7
Sc02g0006830 Simmondsia chinensis HOM05D006792 ORTHO05D008489 3.2e-62 242.3 197 60.9
Carub.0006s0531 Capsella rubella HOM05D006792 ORTHO05D008489 4.2e-62 241.9 196 63.3
BcaC06g32576 Brassica carinata HOM05D006792 ORTHO05D008489 5.5e-62 241.5 187 65.2
BcaC06g32375 Brassica carinata HOM05D006792 ORTHO05D008489 7.1e-62 241.1 192 62.5
C09p70370 Brassica napus HOM05D006792 ORTHO05D008489 7.1e-62 241.1 192 62.5
BraA10t45035Z Brassica rapa HOM05D006792 ORTHO05D008489 7.1e-62 241.1 190 63.2
Glyma.20G204600 Glycine max HOM05D006792 ORTHO05D008489 7.1e-62 241.1 198 61.6
QL02p006151 Quercus lobata HOM05D006792 ORTHO05D008489 7.1e-62 241.1 215 59.1
Haze_17574 Corylus avellana HOM05D006792 ORTHO05D008489 9.3e-62 240.7 214 57.9
PGR031G1590 Punica granatum HOM05D006792 ORTHO05D008489 9.3e-62 240.7 201 60.2
Solyc10g006520.3 Solanum lycopersicum HOM05D006792 ORTHO05D008489 9.3e-62 240.7 210 60.0
Sopen10g002470 Solanum pennellii HOM05D006792 ORTHO05D008489 9.3e-62 240.7 210 60.0
TWI36G0635 Tripterygium wilfordii HOM05D006792 ORTHO05D008489 1.2e-61 240.4 213 57.7
Peaxi162Scf00324g00610 Petunia axillaris HOM05D006792 ORTHO05D008489 1.6e-61 240.0 212 60.4
Cpa.g.sc376.3 Carica papaya HOM05D006792 ORTHO05D008489 2.7e-61 239.2 214 57.5
Cc10_g03850 Coffea canephora HOM05D006792 ORTHO05D008489 2.7e-61 239.2 207 60.9
EL10Ac3g05711 Beta vulgaris HOM05D006792 ORTHO05D008489 6.0e-61 238.0 222 55.9
Nitab4.5_0000074g0180 Nicotiana tabacum HOM05D006792 ORTHO05D008489 6.0e-61 238.0 209 59.3
Nitab4.5_0009129g0010 Nicotiana tabacum HOM05D006792 ORTHO05D008489 6.0e-61 238.0 209 59.3
PGSC0003DMG400014433 Solanum tuberosum HOM05D006792 ORTHO05D008489 6.0e-61 238.0 212 58.5
CAN.G1110.13 Capsicum annuum HOM05D006792 ORTHO05D008489 7.9e-61 237.7 210 58.6
Thhalv10014748m.g Eutrema salsugineum HOM05D006792 ORTHO05D008489 7.9e-61 237.7 192 63.0
HanXRQChr09g0268121 Helianthus annuus HOM05D006792 ORTHO05D008489 7.9e-61 237.7 193 63.7
vmacro21565 Vaccinium macrocarpon HOM05D006792 ORTHO05D008489 1.3e-60 236.9 210 57.6
AT5G06430 Arabidopsis thaliana HOM05D006792 ORTHO05D008489 5.1e-60 235.0 197 62.4
PGR031G1503 Punica granatum HOM05D006792 ORTHO05D008489 6.7e-60 234.6 204 58.8
ECA232G0465 Erigeron canadensis HOM05D006792 ORTHO05D008489 8.7e-60 234.2 193 61.7
Manes.10G083100 Manihot esculenta HOM05D006792 ORTHO05D008489 8.7e-60 234.2 216 58.3
Hund23634 Selenicereus undatus HOM05D006792 ORTHO05D008489 1.1e-59 233.8 227 55.1
AL6G16520 Arabidopsis lyrata HOM05D006792 ORTHO05D008489 1.9e-59 233.0 193 62.2
AL6G16990 Arabidopsis lyrata HOM05D006792 ORTHO05D008489 1.9e-59 233.0 193 62.2
Lsat_1_v5_gn_4_124401 Lactuca sativa HOM05D006792 ORTHO05D008489 2.5e-59 232.6 200 62.0
Lj5g0003340 Lotus japonicus HOM05D006792 ORTHO05D008489 3.7e-58 228.8 213 55.9
THA.LOC104803789 Tarenaya hassleriana HOM05D006792 ORTHO05D008489 3.7e-58 228.8 210 56.7
TPR.G28895 Trifolium pratense HOM05D006792 ORTHO05D008489 3.7e-58 228.8 221 53.8
CANSAT56G4245 Cannabis sativa HOM05D006792 ORTHO05D008489 8.2e-58 227.6 202 59.4
Medtr1g075100 Medicago truncatula HOM05D006792 ORTHO05D008489 8.2e-58 227.6 212 54.2
arahy.Tifrunner.gnm1.ann1.LDJ6K5 Arachis hypogaea HOM05D006792 ORTHO05D008489 1.8e-57 226.5 201 59.7
arahy.Tifrunner.gnm1.ann1.LP5K48 Arachis hypogaea HOM05D006792 ORTHO05D008489 1.8e-57 226.5 201 60.2
Phvul.L001959 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 2.4e-57 226.1 194 59.3
Sabra14G0025200 Salix brachista HOM05D006792 ORTHO05D008489 9.0e-57 224.2 200 58.0
unitig_19.g30007 Utricularia gibba HOM05D006792 ORTHO05D008489 1.2e-56 223.8 198 59.1
COL.COLO4_26447 Corchorus olitorius HOM05D006792 ORTHO05D008489 1.5e-56 223.4 153 73.9
Duzib093G1402 Durio zibethinus HOM05D006792 ORTHO05D008489 2.0e-56 223.0 185 62.2
Ah.07g209080 Amaranthus hybridus HOM05D006792 ORTHO05D008489 5.9e-56 221.5 211 54.0
Psat6g128400 Pisum sativum HOM05D006792 ORTHO05D008489 5.0e-55 218.4 217 53.0
CDE07G1453 Ceratophyllum demersum HOM05D006792 ORTHO05D008489 1.9e-54 216.5 202 56.4
CARHR285910 Cardamine hirsuta HOM05D006792 ORTHO05D008489 3.2e-54 215.7 163 66.3
HPP92_009608 Vanilla planifolia HOM05D006792 ORTHO05D008489 1.2e-53 213.8 207 54.6
VMungo0720G1195 Vigna mungo HOM05D006792 ORTHO05D008489 3.5e-53 212.2 221 54.3
MSTRG.1327 Avicennia marina HOM05D006792 ORTHO05D008489 3.7e-50 202.2 151 67.5
Ca_09830_v3 Cicer arietinum L. HOM05D002720 ORTHO05D002901 2.0e-48 196.4 117 76.9
ATR0225G026 Amborella trichopoda HOM05D006792 ORTHO05D008489 3.4e-48 195.7 190 54.2
Glyma.09G029200 Glycine max HOM05D006792 ORTHO05D008489 8.8e-44 181.0 156 59.6
Oeu040900.1 Olea europaea HOM05D006792 ORTHO05D008489 2.0e-43 179.9 152 58.6
unitig_8.g5015 Utricularia gibba HOM05D006792 ORTHO05D008489 4.8e-42 175.3 198 50.5
Os11g0592900 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 2.4e-41 172.9 205 46.3
SMO184G0001 Selaginella moellendorffii HOM05D006792 ORTHO05D008489 1.5e-40 170.2 117 67.5
Gorai.010G016600 Gossypium raimondii HOM05D006792 ORTHO05D008489 3.8e-39 165.6 155 57.4
Zm00001eb167650 Zea mays HOM05D006792 ORTHO05D008489 8.5e-39 164.5 227 42.7
Phvul.008G161700 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 5.5e-38 161.8 113 71.7
Pp3c14_7090 Physcomitrium patens HOM05D006792 ORTHO05D008489 2.3e-36 156.4 122 59.0
Mapoly0072s0021 Marchantia polymorpha HOM05D006792 ORTHO05D008489 6.7e-36 154.8 120 59.2
CDE04G1657 Ceratophyllum demersum HOM05D006792 ORTHO05D008489 2.6e-35 152.9 164 51.8
Eucgr.E03397 Eucalyptus grandis HOM05D006792 ORTHO05D008489 5.9e-32 141.7 149 51.0
CBR_g61518 Chara braunii HOM05D006792 ORTHO05D008489 3.6e-29 132.5 113 54.9
Rhsim06G0045400 Rhododendron simsii HOM05D000500 ORTHO05D000367 1.5e-19 100.5 74 64.9
CARHR206180 Cardamine hirsuta HOM05D006792 ORTHO05D008489 4.4e-19 99.0 119 47.1
QL03p014147 Quercus lobata HOM05D006792 ORTHO05D008489 7.5e-19 98.2 114 49.1
Phvul.004G112200 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 6.3e-18 95.1 119 45.4
Rhsim06G0045200 Rhododendron simsii HOM05D000500 ORTHO05D000367 6.5e-15 85.1 58 74.1
MD08G1060400 Malus domestica HOM05D006792 ORTHO05D008489 7.2e-14 81.6 50 74.0
Os11g0597500 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 6.1e-13 78.6 146 37.0
Pp3c22_350 Physcomitrium patens HOM05D005776 ORTHO05D007333 7.5e-11 71.6 114 38.6
Cre14.g615250 Chlamydomonas reinhardtii HOM05D006792 ORTHO05D008489 2.7e-08 63.2 86 44.2
Cre17.g702150 Chlamydomonas reinhardtii HOM05D005776 ORTHO05D007333 4.5e-08 62.4 77 37.7
Os11g0597601 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 1.3e-07 60.8 68 47.1
CBR_g30695 Chara braunii HOM05D005776 ORTHO05D007333 1.7e-07 60.5 118 28.8


User provided reference genes

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