Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold127G33962 Striga asiatica HOM05D004623 ORTHO05D005100 1.4e-247 859.4 507 100.0
Migut.E00632 Erythranthe guttata HOM05D004623 ORTHO05D005100 1.3e-192 676.8 533 80.9
SalBow1G2042 Salvia bowleyana HOM05D004623 ORTHO05D005100 4.2e-191 671.8 490 85.1
MSTRG.13716 Avicennia marina HOM05D004623 ORTHO05D005100 1.6e-187 659.8 525 78.7
Dinv12926 Davidia involucrata HOM05D004623 ORTHO05D005100 2.4e-162 576.2 442 80.3
Nitab4.5_0004251g0030 Nicotiana tabacum HOM05D004623 ORTHO05D005100 9.1e-162 574.3 560 68.8
Cc08_g16710 Coffea canephora HOM05D004623 ORTHO05D005100 3.8e-160 568.9 426 78.2
CAN.G567.85 Capsicum annuum HOM05D004623 ORTHO05D005100 8.5e-160 567.8 523 71.7
Nitab4.5_0007063g0040 Nicotiana tabacum HOM05D004623 ORTHO05D005100 2.5e-159 566.2 500 74.6
Solyc08g083070.3 Solanum lycopersicum HOM05D004623 ORTHO05D005100 7.2e-159 564.7 503 73.4
unitig_62.g23647 Utricularia gibba HOM05D004623 ORTHO05D005100 1.2e-158 563.9 496 73.4
CSS0032200 Camellia sinensis var. sinensis HOM05D004623 ORTHO05D005100 2.1e-158 563.1 501 73.3
Sopen08g031290 Solanum pennellii HOM05D004623 ORTHO05D005100 2.7e-158 562.8 522 71.8
Lj2A157G52 Lonicera japonica HOM05D004623 ORTHO05D005100 7.5e-156 554.7 432 79.4
TWI81G0490 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 1.1e-154 550.8 536 68.3
Haze_09171 Corylus avellana HOM05D004623 ORTHO05D005100 2.0e-153 546.6 460 74.1
Eucgr.D01683 Eucalyptus grandis HOM05D004623 ORTHO05D005100 2.7e-153 546.2 516 65.3
TWI15G0843 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 2.7e-153 546.2 464 76.3
Thecc.03G221500 Theobroma cacao HOM05D004623 ORTHO05D005100 3.5e-153 545.8 517 71.4
CiPaw.12G077700 Carya illinoinensis HOM05D004623 ORTHO05D005100 1.0e-152 544.3 524 66.6
Ciclev10019829m.g Citrus clementina HOM05D004623 ORTHO05D005100 1.0e-152 544.3 510 71.2
Nn1g00375 Nelumbo nucifera HOM05D004623 ORTHO05D005100 1.0e-152 544.3 522 67.8
CiPaw.11G112800 Carya illinoinensis HOM05D004623 ORTHO05D005100 1.3e-152 543.9 510 70.0
Atru.chr9.1891 Acer truncatum HOM05D004623 ORTHO05D005100 2.2e-152 543.1 441 72.6
Cfa011928 Carpinus fangiana HOM05D004623 ORTHO05D005100 2.2e-152 543.1 525 68.8
Aqoxy7G00024 Aquilegia oxysepala HOM05D004623 ORTHO05D005100 1.1e-151 540.8 489 72.2
RcHm_v2.0_Chr7g0186861 Rosa chinensis HOM05D004623 ORTHO05D005100 1.5e-151 540.4 524 64.1
Rhsim02G0251800 Rhododendron simsii HOM05D004623 ORTHO05D005100 4.2e-151 538.9 563 57.4
FAN08G2217 Fragaria x ananassa HOM05D004623 ORTHO05D005100 6.1e-150 535.0 454 74.2
CsaV3_3G000890 Cucumis sativus L. HOM05D004623 ORTHO05D005100 2.3e-149 533.1 517 70.6
FAN18G3535 Fragaria x ananassa HOM05D004623 ORTHO05D005100 4.0e-149 532.3 468 72.2
FvH4_5g10960 Fragaria vesca HOM05D004623 ORTHO05D005100 5.2e-149 531.9 469 72.7
FAN13G2046 Fragaria x ananassa HOM05D004623 ORTHO05D005100 6.8e-149 531.6 459 73.6
Prupe.5G129200 Prunus persica HOM05D004623 ORTHO05D005100 8.8e-149 531.2 445 70.6
MD14G1126200 Malus domestica HOM05D004623 ORTHO05D005100 1.5e-148 530.4 447 69.4
Sed0004618 Sechium edule HOM05D004623 ORTHO05D005100 1.5e-148 530.4 514 63.6
PSO063G4918 Papaver somniferum HOM05D004623 ORTHO05D005100 2.0e-148 530.0 457 69.6
HanXRQChr03g0086131 Helianthus annuus HOM05D004623 ORTHO05D005100 2.6e-148 529.6 519 68.6
PGR031G2083 Punica granatum HOM05D004623 ORTHO05D005100 4.4e-148 528.9 462 68.8
COL.COLO4_10792 Corchorus olitorius HOM05D004623 ORTHO05D005100 7.5e-148 528.1 433 77.1
Medtr1g077850 Medicago truncatula HOM05D004623 ORTHO05D005100 1.7e-147 526.9 464 68.5
FAN04G2529 Fragaria x ananassa HOM05D004623 ORTHO05D005100 2.2e-147 526.6 465 62.4
Duzib205G1161 Durio zibethinus HOM05D004623 ORTHO05D005100 2.8e-147 526.2 446 70.6
ClCG10G000820 Citrullus lanatus HOM05D004623 ORTHO05D005100 3.7e-147 525.8 517 63.6
PSO782G3970 Papaver somniferum HOM05D004623 ORTHO05D005100 4.9e-147 525.4 457 69.6
Psat6g053240 Pisum sativum HOM05D004623 ORTHO05D005100 1.1e-146 524.2 428 71.3
TAR629G1871 Trochodendron aralioides HOM05D004623 ORTHO05D005100 1.4e-146 523.9 522 67.4
TAR375G0778 Trochodendron aralioides HOM05D004623 ORTHO05D005100 3.1e-146 522.7 515 68.3
Ca_09948_v3 Cicer arietinum L. HOM05D004623 ORTHO05D005100 5.4e-146 521.9 449 69.3
arahy.Tifrunner.gnm1.ann1.CHU5UJ Arachis hypogaea HOM05D004623 ORTHO05D005100 9.1e-146 521.2 450 72.7
CANSAT21G1410 Cannabis sativa HOM05D004623 ORTHO05D005100 9.1e-146 521.2 512 67.4
Potri.003G146200 Populus trichocarpa HOM05D004623 ORTHO05D005100 1.2e-145 520.8 524 67.9
arahy.Tifrunner.gnm1.ann1.6R22RC Arachis hypogaea HOM05D004623 ORTHO05D005100 2.7e-145 519.6 469 66.5
Glyma.20G217500 Glycine max HOM05D004623 ORTHO05D005100 2.7e-145 519.6 438 69.4
Gohir.D08G123000 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.5e-145 519.2 515 69.1
Gohir.A09G188600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.5e-145 518.8 428 77.3
BcaB06g27683 Brassica carinata HOM05D004623 ORTHO05D005100 2.3e-144 516.5 536 63.4
GSVIVG01019647001 Vitis vinifera HOM05D004623 ORTHO05D005100 2.3e-144 516.5 428 71.3
Phvul.L005101 Phaseolus vulgaris HOM05D004623 ORTHO05D005100 3.8e-144 515.8 453 71.7
VMungo0720G2137 Vigna mungo HOM05D004623 ORTHO05D005100 3.8e-144 515.8 498 62.7
TPR.G34807 Trifolium pratense HOM05D004623 ORTHO05D005100 5.0e-144 515.4 443 69.3
Cpa.g.sc175.24 Carica papaya HOM05D004623 ORTHO05D005100 6.6e-144 515.0 527 65.3
Lalb_Chr21g0311621 Lupinus albus HOM05D004623 ORTHO05D005100 1.5e-143 513.8 502 63.1
QL02p028195 Quercus lobata HOM05D004623 ORTHO05D005100 1.5e-143 513.8 394 81.5
Gohir.A08G110100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.9e-143 513.5 515 68.7
Gohir.D09G183500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.3e-143 512.7 428 76.9
THA.LOC104823625 Tarenaya hassleriana HOM05D004623 ORTHO05D005100 3.3e-143 512.7 527 65.3
CDE09G0653 Ceratophyllum demersum HOM05D004623 ORTHO05D005100 3.6e-142 509.2 493 64.7
Hma1.2p1_0456F.1_g156590 Hydrangea macrophylla HOM05D004623 ORTHO05D005100 1.4e-141 507.3 496 63.1
AT5G41950 Arabidopsis thaliana HOM05D004623 ORTHO05D005100 4.0e-141 505.8 452 71.7
Hund11352 Selenicereus undatus HOM05D004623 ORTHO05D005100 4.0e-141 505.8 503 64.0
Thhalv10027708m.g Eutrema salsugineum HOM05D004623 ORTHO05D005100 6.8e-141 505.0 434 74.7
Aa31LG9G240 Aethionema arabicum HOM05D004623 ORTHO05D005100 8.9e-141 504.6 432 67.8
MELO3C013775.2 Cucumis melo HOM05D004623 ORTHO05D005100 9.8e-140 501.1 573 54.3
Gorai.004G129800 Gossypium raimondii HOM05D004623 ORTHO05D005100 9.8e-140 501.1 547 60.0
Sp7g00180 Schrenkiella parvula HOM05D004623 ORTHO05D005100 9.8e-140 501.1 536 64.4
AUR62007050 Chenopodium quinoa HOM05D004623 ORTHO05D005100 1.7e-139 500.4 468 65.2
Lj5g0020025 Lotus japonicus HOM05D004623 ORTHO05D005100 2.2e-139 500.0 403 72.2
vmacro11504 Vaccinium macrocarpon HOM05D004623 ORTHO05D005100 2.2e-139 500.0 541 54.9
Gorai.006G205900 Gossypium raimondii HOM05D004623 ORTHO05D005100 2.8e-139 499.6 426 75.8
Carub.0007s3343 Capsella rubella HOM05D004623 ORTHO05D005100 4.9e-139 498.8 452 71.9
AL7G47270 Arabidopsis lyrata HOM05D004623 ORTHO05D005100 8.3e-139 498.0 434 74.7
Dinv16877 Davidia involucrata HOM05D004623 ORTHO05D005100 1.8e-138 496.9 495 62.6
BcaC02g08901 Brassica carinata HOM05D004623 ORTHO05D005100 7.0e-138 495.0 551 61.2
BolC4t26520H Brassica oleracea HOM05D004623 ORTHO05D005100 7.0e-138 495.0 551 61.2
ATR0620G132 Amborella trichopoda HOM05D004623 ORTHO05D005100 7.8e-137 491.5 381 73.2
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 7.8e-137 491.5 450 70.4
CARHR212610 Cardamine hirsuta HOM05D004623 ORTHO05D005100 1.3e-136 490.7 549 62.3
Sabra03G0106400 Salix brachista HOM05D004623 ORTHO05D005100 1.3e-136 490.7 551 64.1
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 6.6e-136 488.4 546 60.8
Lj8A201G75 Lonicera japonica HOM05D004623 ORTHO05D005100 1.5e-135 487.3 402 72.1
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 4.3e-135 485.7 553 60.9
Sc22g0004710 Simmondsia chinensis HOM05D004623 ORTHO05D005100 2.8e-134 483.0 512 65.2
Gohir.D03G085500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.7e-131 473.8 520 64.6
DCAR_006543 Daucus carota HOM05D004623 ORTHO05D005100 2.2e-131 473.4 511 61.3
Oeu041377.1 Olea europaea HOM05D004623 ORTHO05D005100 2.2e-131 473.4 460 69.3
Gohir.A02G098100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.7e-131 472.6 522 64.2
Os03g0113800 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 8.3e-131 471.5 492 61.4
Zm00001eb220090 Zea mays HOM05D004623 ORTHO05D005100 2.4e-130 469.9 449 65.3
AUR62019914 Chenopodium quinoa HOM05D004623 ORTHO05D005100 1.6e-129 467.2 497 65.6
Lsat_1_v5_gn_3_14141 Lactuca sativa HOM05D004623 ORTHO05D005100 1.6e-129 467.2 421 73.2
Glyma.10G172800 Glycine max HOM05D004623 ORTHO05D005100 4.6e-129 465.7 448 63.8
Gorai.003G076800 Gossypium raimondii HOM05D004623 ORTHO05D005100 7.8e-129 464.9 537 62.6
MD06G1118100 Malus domestica HOM05D004623 ORTHO05D005100 1.3e-128 464.2 355 70.7
SEGI_26605 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 1.1e-127 461.1 540 60.6
Lalb_Chr02g0149581 Lupinus albus HOM05D004623 ORTHO05D005100 5.6e-127 458.8 474 66.7
ECA240G2146 Erigeron canadensis HOM05D004623 ORTHO05D005100 6.8e-125 451.8 419 72.8
Migut.E00624 Erythranthe guttata HOM05D004623 ORTHO05D005100 5.8e-124 448.7 403 78.9
ECA246G3914 Erigeron canadensis HOM05D004623 ORTHO05D005100 6.4e-123 445.3 399 71.9
Duzib068G0531 Durio zibethinus HOM05D004623 ORTHO05D005100 8.3e-123 444.9 515 63.3
Lsat_1_v5_gn_6_82240 Lactuca sativa HOM05D004623 ORTHO05D005100 1.4e-122 444.1 508 62.4
Manes.01G051700 Manihot esculenta HOM05D004623 ORTHO05D005100 1.0e-120 438.0 527 60.5
Peaxi162Scf00074g00026 Petunia axillaris HOM05D004623 ORTHO05D005100 3.6e-118 429.5 592 48.1
EL10Ac5g12433 Beta vulgaris HOM05D004623 ORTHO05D005100 6.2e-118 428.7 490 56.9
Os10g0518300 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 9.9e-116 421.4 474 59.1
Zm00001eb043430 Zea mays HOM05D004623 ORTHO05D005100 7.1e-114 415.2 416 64.2
Manes.02G003100 Manihot esculenta HOM05D004623 ORTHO05D005100 2.4e-109 400.2 415 70.6
HanXRQChr06g0166801 Helianthus annuus HOM05D004623 ORTHO05D005100 1.5e-108 397.5 466 60.7
Mapoly0068s0096 Marchantia polymorpha HOM05D004623 ORTHO05D005100 1.5e-108 397.5 488 58.2
Actinidia22205 Actinidia chinensis HOM05D004623 ORTHO05D005100 1.6e-102 377.5 334 69.2
HPP92_007396 Vanilla planifolia HOM05D004623 ORTHO05D005100 6.4e-99 365.5 328 66.2
HanXRQChr17g0534721 Helianthus annuus HOM05D004623 ORTHO05D005100 4.6e-97 359.4 343 73.5
AagrBONN_evm.TU.Sc2ySwM_344.2453 Anthoceros agrestis HOM05D004623 ORTHO05D005100 3.9e-96 356.3 391 60.9
MBI12_g13717_MAGBIO Magnolia biondii HOM05D004623 ORTHO05D005100 6.7e-88 328.9 601 43.9
Pp3c1_15130 Physcomitrium patens HOM05D004623 ORTHO05D005100 4.0e-85 319.7 502 50.6
TWI15G1120 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 4.0e-85 319.7 407 51.8
Oeu013386.1 Olea europaea HOM05D004623 ORTHO05D005100 2.9e-83 313.5 282 80.5
SMO134G0154 Selaginella moellendorffii HOM05D004623 ORTHO05D005100 3.2e-82 310.1 278 56.5
CBR_g24226 Chara braunii HOM05D004623 ORTHO05D005100 1.1e-79 301.6 504 47.0
BolC6t37215H Brassica oleracea HOM05D004623 ORTHO05D005100 2.2e-75 287.3 240 62.9
Pp3c2_21950 Physcomitrium patens HOM05D004623 ORTHO05D005100 2.3e-64 250.8 381 41.2
HanXRQChr05g0133491 Helianthus annuus HOM05D004623 ORTHO05D005100 3.5e-52 210.3 131 79.4
Gorai.001G213600 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.0e-51 208.8 152 67.8
Gohir.D05G097100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 8.8e-48 195.7 141 67.4
Gohir.A06G102600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.6e-47 194.1 141 66.7
C06p20370 Brassica napus HOM05D004623 ORTHO05D005100 7.5e-47 192.6 182 57.1
Gorai.003G053400 Gossypium raimondii HOM05D004623 ORTHO05D005100 6.3e-46 189.5 141 63.8
Gohir.D08G109908 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.7e-41 174.1 168 56.5
Gorai.002G111300 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.2e-39 168.7 134 61.9
Gohir.D01G085875 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.5e-39 168.3 134 61.2
Gohir.D03G136750 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.7e-35 154.8 171 52.0
SEGI_12617 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 4.2e-34 150.2 95 80.0
Gohir.D07G097001 Gossypium hirsutum HOM05D004623 ORTHO05D005100 9.4e-34 149.1 128 59.4
Gohir.D04G089675 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.8e-27 127.1 73 78.1
SEGI_10381 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 1.1e-26 125.6 106 56.6
BcaC08g44571 Brassica carinata HOM05D004623 ORTHO05D005100 6.8e-24 116.3 90 64.4
MCO14G177 Micromonas commoda HOM05D004623 ORTHO05D005100 8.3e-22 109.4 344 27.3
Cre09.g387550 Chlamydomonas reinhardtii HOM05D004623 ORTHO05D005100 1.4e-21 108.6 214 32.7
TPR.G39353 Trifolium pratense HOM05D004623 ORTHO05D005100 7.3e-18 96.3 55 81.8
Glyma.02G157002 Glycine max HOM05D000518 ORTHO05D005100 1.2e-15 89.0 55 74.5
Actinidia15203 Actinidia chinensis HOM05D004623 ORTHO05D005100 9.8e-15 85.9 71 69.0
Actinidia19830 Actinidia chinensis HOM05D004623 ORTHO05D005100 8.3e-14 82.8 52 80.8
MD08G1234800 Malus domestica HOM05D008315 ORTHO05D009452 4.7e-09 67.0 57 63.2
Lsat_1_v5_gn_1_84960 Lactuca sativa HOM05D004623 ORTHO05D005100 6.8e-08 63.2 68 52.9
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 1.7e-06 58.5 123 35.0


User provided reference genes

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