Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold126G33909 Striga asiatica HOM05D004499 ORTHO05D004928 7.8e-135 483.8 243 100.0
MSTRG.19143 Avicennia marina HOM05D004499 ORTHO05D004928 1.4e-43 180.6 306 43.8
SalBow3G3210 Salvia bowleyana HOM05D004499 ORTHO05D004928 2.6e-42 176.4 286 44.8
MSTRG.26719 Avicennia marina HOM05D004499 ORTHO05D004928 7.2e-40 168.3 265 44.9
Migut.J00423 Erythranthe guttata HOM05D004499 ORTHO05D004928 3.0e-38 162.9 310 40.3
Gorai.009G419500 Gossypium raimondii HOM05D004499 ORTHO05D004928 1.3e-36 157.5 302 40.7
Gohir.A04G075800 Gossypium hirsutum HOM05D004499 ORTHO05D004928 1.4e-35 154.1 304 40.5
Haze_20629 Corylus avellana HOM05D004499 ORTHO05D004928 3.5e-34 149.4 319 38.9
CiPaw.09G179000 Carya illinoinensis HOM05D004499 ORTHO05D004928 4.5e-34 149.1 311 39.5
CSS0037383 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 1.0e-33 147.9 291 40.9
QL07p045089 Quercus lobata HOM05D004499 ORTHO05D004928 1.3e-33 147.5 319 39.5
MD04G1102600 Malus domestica HOM05D004499 ORTHO05D004928 2.2e-33 146.7 321 36.8
Sed0006356 Sechium edule HOM05D004499 ORTHO05D004928 2.2e-33 146.7 299 37.1
Gorai.006G168200 Gossypium raimondii HOM05D004499 ORTHO05D004928 2.9e-33 146.4 279 39.8
Prupe.6G240400 Prunus persica HOM05D004499 ORTHO05D004928 2.9e-33 146.4 331 38.4
Gohir.D09G147000 Gossypium hirsutum HOM05D004499 ORTHO05D004928 3.8e-33 146.0 279 39.8
ClCG10G020450 Citrullus lanatus HOM05D004499 ORTHO05D004928 5.0e-33 145.6 337 36.2
CSS0026303 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 6.5e-33 145.2 291 40.2
Gohir.A09G151400 Gossypium hirsutum HOM05D004499 ORTHO05D004928 1.5e-32 144.1 279 39.4
MSTRG.10304 Avicennia marina HOM05D004499 ORTHO05D004928 1.9e-32 143.7 289 37.4
Dinv37265 Davidia involucrata HOM05D004499 ORTHO05D004928 1.9e-32 143.7 300 38.7
TAR623G0879 Trochodendron aralioides HOM05D004499 ORTHO05D004928 2.5e-32 143.3 299 39.1
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 3.2e-32 142.9 255 42.0
Lsat_1_v5_gn_6_30120 Lactuca sativa HOM05D004499 ORTHO05D004928 7.2e-32 141.7 292 39.7
Oeu029418.1 Olea europaea HOM05D004499 ORTHO05D004928 9.4e-32 141.4 294 39.5
Phvul.001G175400 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 1.6e-31 140.6 262 39.3
Sed0022446 Sechium edule HOM05D004499 ORTHO05D004928 1.6e-31 140.6 330 37.3
Duzib093G0117 Durio zibethinus HOM05D004499 ORTHO05D004928 3.6e-31 139.4 308 39.0
Hma1.2p1_0350F.1_g132810 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 4.7e-31 139.0 308 38.3
DCAR_014968 Daucus carota HOM05D004499 ORTHO05D004928 6.1e-31 138.7 264 40.9
CsaV3_3G035670 Cucumis sativus L. HOM05D004499 ORTHO05D004928 8.0e-31 138.3 346 34.7
Potri.006G130500 Populus trichocarpa HOM05D004499 ORTHO05D004928 8.0e-31 138.3 310 39.7
Cpa.g.sc174.12 Carica papaya HOM05D004499 ORTHO05D004928 1.0e-30 137.9 278 38.1
Medtr7g100830 Medicago truncatula HOM05D004499 ORTHO05D004928 1.4e-30 137.5 267 39.7
Hma1.2p1_0111F.1_g054000 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 1.8e-30 137.1 298 37.2
CANSAT80G2505 Cannabis sativa HOM05D004499 ORTHO05D004928 2.3e-30 136.7 335 35.5
VMungo1383G2757 Vigna mungo HOM05D004499 ORTHO05D004928 2.3e-30 136.7 260 39.2
Glyma.03G178700 Glycine max HOM05D004499 ORTHO05D004928 3.0e-30 136.3 270 39.6
Glyma.19G179400 Glycine max HOM05D004499 ORTHO05D004928 3.0e-30 136.3 279 39.4
SGA_v2.0_scaffold94G28675 Striga asiatica HOM05D004499 ORTHO05D004928 3.0e-30 136.3 243 42.4
THA.LOC104806496 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 3.0e-30 136.3 306 38.2
Solyc09g007470.2 Solanum lycopersicum HOM05D004499 ORTHO05D004928 6.8e-30 135.2 265 38.1
Sopen00g013370 Solanum pennellii HOM05D004499 ORTHO05D004928 6.8e-30 135.2 272 38.2
MELO3C009326.2 Cucumis melo HOM05D004499 ORTHO05D004928 1.2e-29 134.4 339 35.1
Oeu060092.2 Olea europaea HOM05D000784 ORTHO05D004928 3.4e-29 132.9 245 41.6
TWI53G1356 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 3.4e-29 132.9 216 43.5
unitig_26.g9218 Utricularia gibba HOM05D004499 ORTHO05D004928 5.7e-29 132.1 261 40.6
Atru.chr8.1895 Acer truncatum HOM05D004499 ORTHO05D004928 7.5e-29 131.7 239 41.4
FAN05G3415 Fragaria x ananassa HOM05D004499 ORTHO05D004928 7.5e-29 131.7 320 37.8
Thecc.05G055800 Theobroma cacao HOM05D004499 ORTHO05D004928 7.5e-29 131.7 316 37.0
CSS0015121 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 2.2e-28 130.2 315 35.9
Nn2g13028 Nelumbo nucifera HOM05D004499 ORTHO05D004928 2.2e-28 130.2 208 43.3
Nn2g10698 Nelumbo nucifera HOM05D004499 ORTHO05D004928 2.8e-28 129.8 308 37.3
Psat3g044200 Pisum sativum HOM05D004499 ORTHO05D004928 2.8e-28 129.8 302 36.1
Sabra06G0102500 Salix brachista HOM05D004499 ORTHO05D004928 2.8e-28 129.8 305 38.0
Lalb_Chr25g0289231 Lupinus albus HOM05D004499 ORTHO05D004928 3.7e-28 129.4 321 37.1
Cc06_g03680 Coffea canephora HOM05D004499 ORTHO05D004928 6.3e-28 128.6 331 35.0
CiPaw.10G136800 Carya illinoinensis HOM05D004499 ORTHO05D004928 1.1e-27 127.9 312 36.9
Cfa017521 Carpinus fangiana HOM05D004499 ORTHO05D004928 1.8e-27 127.1 208 45.2
RcHm_v2.0_Chr3g0469011 Rosa chinensis HOM05D004499 ORTHO05D004928 1.8e-27 127.1 321 34.0
PGSC0003DMG400001742 Solanum tuberosum HOM05D004499 ORTHO05D004928 2.4e-27 126.7 275 36.4
Lj5g0026303 Lotus japonicus HOM05D004499 ORTHO05D004928 4.1e-27 125.9 311 37.6
Lj1g0000961 Lotus japonicus HOM05D004499 ORTHO05D004928 5.4e-27 125.6 284 38.7
FAN09G3365 Fragaria x ananassa HOM05D004499 ORTHO05D004928 1.2e-26 124.4 323 35.9
FAN14G2800 Fragaria x ananassa HOM05D004499 ORTHO05D004928 1.2e-26 124.4 323 35.9
Manes.09G078863 Manihot esculenta HOM05D004499 ORTHO05D004928 1.6e-26 124.0 303 36.3
FvH4_6g15510 Fragaria vesca HOM05D004499 ORTHO05D004928 2.7e-26 123.2 323 35.6
Sc20g0005110 Simmondsia chinensis HOM05D004499 ORTHO05D004928 1.0e-25 121.3 295 36.9
FAN02G0924 Fragaria x ananassa HOM05D004499 ORTHO05D004928 1.3e-25 120.9 231 42.0
Rhsim04G0149000 Rhododendron simsii HOM05D004499 ORTHO05D004928 2.3e-25 120.2 328 34.1
Sp4g19420 Schrenkiella parvula HOM05D004499 ORTHO05D004928 2.3e-25 120.2 293 36.9
TWI77G0862 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 6.6e-25 118.6 206 41.7
Aqoxy4G03228 Aquilegia oxysepala HOM05D004499 ORTHO05D004928 8.6e-25 118.2 316 32.9
Phvul.007G164800 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 8.6e-25 118.2 279 36.2
MELO3C014257.2 Cucumis melo HOM05D004499 ORTHO05D004928 1.9e-24 117.1 259 39.0
Ca_08832_v3 Cicer arietinum L. HOM05D004499 ORTHO05D004928 2.5e-24 116.7 282 36.5
Psat6g070200 Pisum sativum HOM05D004499 ORTHO05D004928 5.5e-24 115.5 262 37.4
AUR62042302 Chenopodium quinoa HOM05D004499 ORTHO05D004928 7.2e-24 115.2 187 42.8
ClCG04G008860 Citrullus lanatus HOM05D004499 ORTHO05D004928 1.6e-23 114.0 261 38.7
Oeu038974.1 Olea europaea HOM05D004499 ORTHO05D004928 1.6e-23 114.0 344 33.1
Thhalv10016942m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 2.8e-23 113.2 323 34.1
C02p00790 Brassica napus HOM05D004499 ORTHO05D004928 4.7e-23 112.5 277 36.1
BolC2t06077H Brassica oleracea HOM05D004499 ORTHO05D004928 4.7e-23 112.5 277 36.1
Sabra16G0093100 Salix brachista HOM05D004499 ORTHO05D004928 8.0e-23 111.7 305 35.4
Glyma.10G050500 Glycine max HOM05D004499 ORTHO05D004928 1.0e-22 111.3 285 34.7
BcaC03g13031 Brassica carinata HOM05D004499 ORTHO05D004928 1.4e-22 110.9 277 36.1
Lalb_Chr01g0018981 Lupinus albus HOM05D004499 ORTHO05D004928 2.3e-22 110.2 320 32.2
Potri.016G086900 Populus trichocarpa HOM05D004499 ORTHO05D004928 2.3e-22 110.2 309 36.9
Sp6g39600 Schrenkiella parvula HOM05D004499 ORTHO05D004928 2.3e-22 110.2 291 36.1
DCAR_009280 Daucus carota HOM05D004499 ORTHO05D004928 3.0e-22 109.8 285 35.4
CARHR131610 Cardamine hirsuta HOM05D004499 ORTHO05D004928 4.0e-22 109.4 290 36.9
Manes.08G004127 Manihot esculenta HOM05D004499 ORTHO05D004928 4.0e-22 109.4 199 42.2
Manes.08G004131 Manihot esculenta HOM05D004499 ORTHO05D004928 4.0e-22 109.4 199 42.2
Medtr1g066750 Medicago truncatula HOM05D004499 ORTHO05D004928 4.0e-22 109.4 285 34.4
CARHR210240 Cardamine hirsuta HOM05D004499 ORTHO05D004928 5.2e-22 109.0 289 34.3
Glyma.13G138000 Glycine max HOM05D004499 ORTHO05D004928 5.2e-22 109.0 291 34.0
Manes.08G004114 Manihot esculenta HOM05D004499 ORTHO05D004928 5.2e-22 109.0 199 42.2
Manes.08G004120 Manihot esculenta HOM05D004499 ORTHO05D004928 5.2e-22 109.0 199 42.2
MD12G1122400 Malus domestica HOM05D004499 ORTHO05D004928 8.9e-22 108.2 321 32.1
ECA233G0353 Erigeron canadensis HOM05D004499 ORTHO05D004928 1.2e-21 107.8 269 36.4
SHI12538 Sapria himalayana HOM05D004499 ORTHO05D004928 1.2e-21 107.8 247 35.2
Manes.08G004126 Manihot esculenta HOM05D004499 ORTHO05D004928 1.5e-21 107.5 199 41.2
PGR004G1454 Punica granatum HOM05D004499 ORTHO05D004928 1.5e-21 107.5 255 35.7
CsaV3_6G039360 Cucumis sativus L. HOM05D004499 ORTHO05D004928 2.6e-21 106.7 263 37.3
Manes.08G004109 Manihot esculenta HOM05D004499 ORTHO05D004928 2.6e-21 106.7 199 41.2
Manes.08G004117 Manihot esculenta HOM05D004499 ORTHO05D004928 2.6e-21 106.7 199 41.2
Thhalv10014228m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 4.4e-21 105.9 299 35.8
Lsat_1_v5_gn_1_54160 Lactuca sativa HOM05D004499 ORTHO05D004928 4.4e-21 105.9 256 37.5
BcaB02g09303 Brassica carinata HOM05D004499 ORTHO05D004928 5.7e-21 105.5 299 35.8
AT5G03110 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 1.3e-20 104.4 284 35.2
THA.LOC104826978 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 1.7e-20 104.0 251 36.7
Gohir.D04G114901 Gossypium hirsutum HOM05D004499 ORTHO05D004928 3.7e-20 102.8 101 60.4
AL4G33450 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 4.9e-20 102.4 291 36.1
A05p08740 Brassica napus HOM05D004499 ORTHO05D004928 4.9e-20 102.4 297 35.0
Aa31LG5G22320 Aethionema arabicum HOM05D004499 ORTHO05D004928 6.3e-20 102.1 278 36.7
Duzib106G0876 Durio zibethinus HOM05D004499 ORTHO05D004928 8.3e-20 101.7 245 36.7
BolC4t22678H Brassica oleracea HOM05D004499 ORTHO05D004928 1.1e-19 101.3 289 35.6
BcaC02g11837 Brassica carinata HOM05D004499 ORTHO05D004928 1.4e-19 100.9 290 35.9
C04p10830 Brassica napus HOM05D004499 ORTHO05D004928 1.4e-19 100.9 290 35.9
AL6G12390 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 4.1e-19 99.4 288 35.1
Sc02g0001920 Simmondsia chinensis HOM05D004499 ORTHO05D004928 4.1e-19 99.4 237 35.9
Sed0011318 Sechium edule HOM05D004499 ORTHO05D004928 5.4e-19 99.0 216 40.7
BcaB05g21851 Brassica carinata HOM05D004499 ORTHO05D004928 9.2e-19 98.2 294 33.7
BraA05t19842Z Brassica rapa HOM05D004499 ORTHO05D004928 1.2e-18 97.8 296 34.1
BraA02t04744Z Brassica rapa HOM05D004499 ORTHO05D004928 1.6e-18 97.4 280 33.9
Dinv35728 Davidia involucrata HOM05D004499 ORTHO05D004928 2.7e-18 96.7 77 67.5
COL.COLO4_27061 Corchorus olitorius HOM05D004499 ORTHO05D004928 7.8e-18 95.1 79 67.1
AT2G37100 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 1.0e-17 94.7 281 33.1
Carub.0006s0191 Capsella rubella HOM05D004499 ORTHO05D004928 1.0e-17 94.7 278 32.7
Actinidia40043 Actinidia chinensis HOM05D004499 ORTHO05D004928 1.3e-17 94.4 241 36.5
Manes.08G004906 Manihot esculenta HOM05D004499 ORTHO05D004928 2.9e-17 93.2 79 65.8
Manes.12G048251 Manihot esculenta HOM05D004499 ORTHO05D004928 1.9e-16 90.5 79 64.6
Manes.05G197001 Manihot esculenta HOM05D004499 ORTHO05D004928 3.3e-16 89.7 79 64.6
PSO339G1230 Papaver somniferum HOM05D004499 ORTHO05D004928 3.3e-16 89.7 310 28.1
Ah.15g092180 Amaranthus hybridus HOM05D004499 ORTHO05D004928 4.3e-16 89.4 81 59.3
TPR.G36959 Trifolium pratense HOM05D004499 ORTHO05D004928 5.6e-16 89.0 220 37.3
THA.LOC104816329 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 9.5e-16 88.2 260 32.3
Manes.05G197300 Manihot esculenta HOM05D004499 ORTHO05D004928 3.6e-15 86.3 79 63.3
Carub.0004s1899 Capsella rubella HOM05D004499 ORTHO05D004928 4.7e-15 85.9 282 32.3
HanXRQChr02g0051991 Helianthus annuus HOM05D004499 ORTHO05D004928 6.1e-15 85.5 84 59.5
Lalb_Chr20g0112851 Lupinus albus HOM05D004499 ORTHO05D004928 1.0e-14 84.7 207 35.3
PSO384G2831 Papaver somniferum HOM05D004499 ORTHO05D004928 4.0e-14 82.8 300 27.3
PSO063G6372 Papaver somniferum HOM05D004499 ORTHO05D004928 8.9e-14 81.6 300 27.7
Oeu059988.1 Olea europaea HOM05D004499 ORTHO05D004928 2.6e-13 80.1 88 53.4
Peaxi162Scf00005g04016 Petunia axillaris HOM05D004499 ORTHO05D004928 2.6e-13 80.1 78 56.4
RhsimUnG0115800 Rhododendron simsii HOM05D004499 ORTHO05D004928 5.8e-13 79.0 111 45.0
PSO339G0805 Papaver somniferum HOM05D004499 ORTHO05D004928 7.8e-10 68.6 311 25.4
HPP92_001043 Vanilla planifolia HOM05D004499 ORTHO05D004928 7.8e-10 68.6 289 29.1
AUR62044753 Chenopodium quinoa HOM05D004499 ORTHO05D004928 3.9e-09 66.2 145 35.9
CDE10G0292 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 6.6e-09 65.5 161 36.0
MBI05_g41566_MAGBIO Magnolia biondii HOM05D060308 ORTHO05D004928 7.3e-08 62.0 99 40.4
SEGI_02629 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 1.6e-07 60.8 83 50.6
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 4.0e-06 56.2 88 46.6
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 6.8e-06 55.5 88 45.5
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 8.9e-06 55.1 87 43.7


User provided reference genes

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