Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold126G33863 Striga asiatica HOM05D007382 ORTHO05D009012 6.5e-128 460.7 223 100.0
Migut.J00393 Erythranthe guttata HOM05D007382 ORTHO05D009012 2.9e-51 206.1 164 68.9
MSTRG.19120 Avicennia marina HOM05D007382 ORTHO05D009012 2.0e-44 183.3 143 65.7
Oeu029114.1 Olea europaea HOM05D007382 ORTHO05D009012 1.3e-43 180.6 163 55.8
GSVIVG01025574001 Vitis vinifera HOM05D002855 ORTHO05D009676 2.1e-41 173.3 141 59.6
Nitab4.5_0007103g0020 Nicotiana tabacum HOM05D007382 ORTHO05D009012 1.0e-40 171.0 147 59.2
Dinv37282 Davidia involucrata HOM05D007382 ORTHO05D009012 1.3e-40 170.6 154 54.5
Hma1.2p1_0111F.1_g053520 Hydrangea macrophylla HOM05D007382 ORTHO05D009012 1.7e-40 170.2 147 57.8
Ciclev10012925m.g Citrus clementina HOM05D007382 ORTHO05D009012 3.0e-40 169.5 163 52.8
Hma1.2p1_0111F.1_g053480 Hydrangea macrophylla HOM05D007382 ORTHO05D009012 6.6e-40 168.3 147 57.8
Nitab4.5_0000202g0370 Nicotiana tabacum HOM05D007382 ORTHO05D009012 7.3e-39 164.9 147 57.8
Peaxi162Scf00472g00081 Petunia axillaris HOM05D007382 ORTHO05D009012 9.6e-39 164.5 135 58.5
HanXRQChr07g0195861 Helianthus annuus HOM05D007382 ORTHO05D009012 1.6e-38 163.7 142 55.6
CSS0017861 Camellia sinensis var. sinensis HOM05D007382 ORTHO05D009012 1.8e-37 160.2 136 56.6
Manes.09G071800 Manihot esculenta HOM05D007382 ORTHO05D009012 1.8e-37 160.2 172 48.8
QL07p045887 Quercus lobata HOM05D007382 ORTHO05D009012 5.2e-37 158.7 158 51.3
Sabra06G0166500 Salix brachista HOM05D007382 ORTHO05D009012 5.2e-37 158.7 130 58.5
MD12G1130200 Malus domestica HOM05D007382 ORTHO05D009012 6.9e-37 158.3 168 48.8
Prupe.6G245200 Prunus persica HOM05D007382 ORTHO05D009012 6.9e-37 158.3 160 51.2
CAN.G435.4 Capsicum annuum HOM05D007382 ORTHO05D009012 1.2e-36 157.5 136 55.9
Cfa017470 Carpinus fangiana HOM05D007382 ORTHO05D009012 2.6e-36 156.4 146 51.4
HanXRQChr10g0297271 Helianthus annuus HOM05D007382 ORTHO05D009012 3.4e-36 156.0 153 52.9
Nn3g20330 Nelumbo nucifera HOM05D007382 ORTHO05D009012 3.4e-36 156.0 125 59.2
TAR369G0081 Trochodendron aralioides HOM05D007382 ORTHO05D009012 3.4e-36 156.0 140 52.1
Potri.006G216000 Populus trichocarpa HOM05D007382 ORTHO05D009012 4.4e-36 155.6 129 58.1
Haze_20685 Corylus avellana HOM05D007382 ORTHO05D009012 5.8e-36 155.2 146 51.4
Nn2g10574 Nelumbo nucifera HOM05D007382 ORTHO05D009012 1.3e-35 154.1 162 48.8
CiPaw.10G139200 Carya illinoinensis HOM05D007382 ORTHO05D009012 2.4e-34 149.8 159 47.8
Sopen10g033880 Solanum pennellii HOM05D007382 ORTHO05D009012 5.4e-34 148.7 163 48.5
Lsat_1_v5_gn_2_110741 Lactuca sativa HOM05D007382 ORTHO05D009012 9.3e-34 147.9 128 55.5
Lsat_1_v5_gn_2_111101 Lactuca sativa HOM05D007382 ORTHO05D009012 9.3e-34 147.9 128 55.5
Solyc10g084440.3 Solanum lycopersicum HOM05D007382 ORTHO05D009012 9.3e-34 147.9 152 49.3
Eucgr.A01209 Eucalyptus grandis HOM05D007382 ORTHO05D009012 2.7e-33 146.4 149 52.3
AUR62042292 Chenopodium quinoa HOM05D002855 ORTHO05D009012 3.5e-33 146.0 149 50.3
Duzib093G1372 Durio zibethinus HOM05D007382 ORTHO05D009012 2.3e-32 143.3 135 51.9
PGSC0003DMG401010988 Solanum tuberosum HOM05D007382 ORTHO05D009012 2.3e-32 143.3 154 49.4
Thecc.05G050100 Theobroma cacao HOM05D007382 ORTHO05D009012 3.0e-32 142.9 152 48.7
ECA238G1385 Erigeron canadensis HOM05D007382 ORTHO05D009012 3.9e-32 142.5 132 54.5
Gohir.D04G117000 Gossypium hirsutum HOM05D007382 ORTHO05D009012 3.9e-32 142.5 137 53.3
Gorai.009G421900 Gossypium raimondii HOM05D007382 ORTHO05D009012 3.9e-32 142.5 137 53.3
Sed0019756 Sechium edule HOM05D007382 ORTHO05D009012 3.9e-32 142.5 142 48.6
FvH4_6g14870 Fragaria vesca HOM05D007382 ORTHO05D009012 8.7e-32 141.4 130 53.8
FAN14G4413 Fragaria x ananassa HOM05D002855 ORTHO05D009012 8.7e-32 141.4 130 53.8
EL10Ac7g17270 Beta vulgaris HOM05D007382 ORTHO05D009012 1.1e-31 141.0 168 45.8
FAN09G0189 Fragaria x ananassa HOM05D007382 ORTHO05D009012 1.1e-31 141.0 154 50.0
FAN09G4246 Fragaria x ananassa HOM05D005749 ORTHO05D007208 1.1e-31 141.0 154 50.0
PGSC0003DMG400038088 Solanum tuberosum HOM05D007382 ORTHO05D009012 1.5e-31 140.6 134 53.7
Gohir.A04G077800 Gossypium hirsutum HOM05D007382 ORTHO05D009012 1.9e-31 140.2 137 52.6
AUR62036838 Chenopodium quinoa HOM05D007382 ORTHO05D009012 2.5e-31 139.8 162 47.5
Cc06_g15490 Coffea canephora HOM05D007382 ORTHO05D009012 2.5e-31 139.8 133 52.6
FAN05G3594 Fragaria x ananassa HOM05D007382 ORTHO05D009012 2.5e-31 139.8 130 53.1
Lsat_1_v5_gn_2_110841 Lactuca sativa HOM05D007382 ORTHO05D009012 2.5e-31 139.8 126 53.2
Sopen07g005520 Solanum pennellii HOM05D007382 ORTHO05D009012 2.5e-31 139.8 134 53.7
COL.COLO4_10307 Corchorus olitorius HOM05D007382 ORTHO05D009012 3.3e-31 139.4 152 50.7
RcHm_v2.0_Chr3g0468081 Rosa chinensis HOM05D007382 ORTHO05D009012 3.3e-31 139.4 154 48.7
CANSAT80G2903 Cannabis sativa HOM05D007382 ORTHO05D009012 4.3e-31 139.0 151 47.7
MELO3C003080.2 Cucumis melo HOM05D007382 ORTHO05D009012 5.6e-31 138.7 160 44.4
Hund10951 Selenicereus undatus HOM05D007382 ORTHO05D009012 5.6e-31 138.7 178 43.8
Sc01g0003740 Simmondsia chinensis HOM05D007382 ORTHO05D009012 9.6e-31 137.9 158 44.9
Solyc07g014660.3 Solanum lycopersicum HOM05D007382 ORTHO05D009012 1.6e-30 137.1 134 53.0
Ah.08g212080 Amaranthus hybridus HOM05D007382 ORTHO05D009012 2.8e-30 136.3 153 47.7
CsaV3_4G024470 Cucumis sativus L. HOM05D007382 ORTHO05D009012 2.8e-30 136.3 142 47.2
Sopen09g026050 Solanum pennellii HOM05D007382 ORTHO05D009012 1.1e-29 134.4 134 50.0
Glyma.03G175900 Glycine max HOM05D007382 ORTHO05D009012 3.1e-29 132.9 141 47.5
MBI04_g28758_MAGBIO Magnolia biondii HOM05D007382 ORTHO05D009012 1.2e-28 131.0 139 48.2
MBI04_g38440_MAGBIO Magnolia biondii HOM05D007382 ORTHO05D009012 1.2e-28 131.0 139 48.2
Ca_08808_v3 Cicer arietinum L. HOM05D007382 ORTHO05D009012 2.0e-28 130.2 157 42.7
AL5G39780 Arabidopsis lyrata HOM05D007382 ORTHO05D009012 3.4e-28 129.4 126 50.8
PSO384G2862 Papaver somniferum HOM05D007382 ORTHO05D009012 4.5e-28 129.0 172 44.8
BcaC02g09988 Brassica carinata HOM05D007382 ORTHO05D009012 5.8e-28 128.6 132 47.7
Medtr7g100230 Medicago truncatula HOM05D007382 ORTHO05D009012 5.8e-28 128.6 147 44.2
Sp5g04630 Schrenkiella parvula HOM05D007382 ORTHO05D009012 9.9e-28 127.9 128 48.4
Sed0025265 Sechium edule HOM05D007382 ORTHO05D009012 9.9e-28 127.9 142 45.8
TWI77G0838 Tripterygium wilfordii HOM05D007382 ORTHO05D009012 9.9e-28 127.9 124 53.2
Carub.0005s2494 Capsella rubella HOM05D007382 ORTHO05D009012 1.3e-27 127.5 124 50.8
ClCG04G008690 Citrullus lanatus HOM05D007382 ORTHO05D009012 1.3e-27 127.5 163 39.9
Phvul.001G173000 Phaseolus vulgaris HOM05D007382 ORTHO05D009012 1.3e-27 127.5 130 46.9
PGSC0003DMG400037466 Solanum tuberosum HOM05D007382 ORTHO05D009012 1.3e-27 127.5 134 48.5
Glyma.19G176400 Glycine max HOM05D007382 ORTHO05D009012 2.2e-27 126.7 145 47.6
Aa31LG10G12820 Aethionema arabicum HOM05D007382 ORTHO05D009012 2.9e-27 126.3 141 45.4
VMungo1383G3160 Vigna mungo HOM05D007382 ORTHO05D009012 1.1e-26 124.4 199 36.2
CDE05G2022 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 1.4e-26 124.0 124 50.0
CARHR168440 Cardamine hirsuta HOM05D007382 ORTHO05D009012 5.4e-26 122.1 112 53.6
unitig_744.g24666 Utricularia gibba HOM05D007382 ORTHO05D009012 5.4e-26 122.1 145 46.2
ATR0709G053 Amborella trichopoda HOM05D007382 ORTHO05D009012 1.6e-25 120.6 155 44.5
BcaB02g08277 Brassica carinata HOM05D007382 ORTHO05D009012 1.6e-25 120.6 130 46.2
Aqoxy5G00351 Aquilegia oxysepala HOM05D007382 ORTHO05D009012 6.0e-25 118.6 142 45.8
Lj1g0005181 Lotus japonicus HOM05D007382 ORTHO05D009012 6.0e-25 118.6 130 46.2
AT3G58090 Arabidopsis thaliana HOM05D000180 ORTHO05D000099 1.3e-24 117.5 102 55.9
Psat7g058560 Pisum sativum HOM05D007382 ORTHO05D009012 2.3e-24 116.7 128 43.8
BolC4t24990H Brassica oleracea HOM05D000180 ORTHO05D000099 5.6e-23 112.1 108 49.1
Zm00001eb148770 Zea mays HOM05D007382 ORTHO05D009012 7.4e-23 111.7 129 45.7
C04p34300 Brassica napus HOM05D000180 ORTHO05D000099 9.6e-23 111.3 108 49.1
PGSC0003DMG400035622 Solanum tuberosum HOM05D007382 ORTHO05D009012 1.3e-22 110.9 114 49.1
TPR.G21464 Trifolium pratense HOM05D007382 ORTHO05D009012 1.3e-22 110.9 178 36.5
A04p02730 Brassica napus HOM05D000180 ORTHO05D000099 1.6e-22 110.5 108 49.1
BraA04t15999Z Brassica rapa HOM05D000180 ORTHO05D000099 1.6e-22 110.5 108 49.1
Medtr7g100200 Medicago truncatula HOM05D007382 ORTHO05D009012 1.8e-21 107.1 144 39.6
Os01g0835600 Oryza sativa ssp. japonica HOM05D007382 ORTHO05D009012 5.3e-21 105.5 116 47.4
AUR62043938 Chenopodium quinoa HOM05D002855 ORTHO05D004406 1.2e-20 104.4 141 42.6
CiPaw.15G123900 Carya illinoinensis HOM05D007382 ORTHO05D009012 7.6e-20 101.7 144 38.9
SEGI_34495 Sequoiadendron giganteum HOM05D007382 ORTHO05D009012 6.4e-19 98.6 161 37.3
HPP92_019795 Vanilla planifolia HOM05D007382 ORTHO05D009012 8.4e-19 98.2 118 43.2
VMungo1080G1211 Vigna mungo HOM05D007382 ORTHO05D009012 7.1e-18 95.1 69 60.9
Lalb_Chr20g0113021 Lupinus albus HOM05D007382 ORTHO05D009012 1.2e-17 94.4 86 51.2
CDE09G1151 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 2.8e-14 83.2 155 34.8
Lalb_Chr25g0289341 Lupinus albus HOM05D007382 ORTHO05D009012 2.8e-14 83.2 81 49.4
CDE12G0689 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 1.3e-11 74.3 72 44.4
ATR0665G317 Amborella trichopoda HOM05D007382 ORTHO05D009012 5.5e-10 68.9 54 61.1
ATR0829G079 Amborella trichopoda HOM05D016889 ORTHO05D026570 1.2e-09 67.8 106 39.6
SEGI_03776 Sequoiadendron giganteum HOM05D016889 ORTHO05D009012 1.0e-08 64.7 131 35.9
TAR633G0943 Trochodendron aralioides HOM05D007382 ORTHO05D009012 2.5e-07 60.1 58 50.0
CBR_g41746 Chara braunii HOM05D007382 ORTHO05D009012 9.6e-07 58.2 81 39.5
Pp3c14_21840 Physcomitrium patens HOM05D016889 ORTHO05D009012 9.6e-07 58.2 56 50.0
SMO147G0006 Selaginella moellendorffii HOM05D016889 ORTHO05D026570 9.6e-07 58.2 52 53.8


User provided reference genes

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