Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold126G33859 Striga asiatica HOM05D000227 ORTHO05D003028 1.1e-87 326.6 162 100.0
SGA_v2.0_scaffold10G05200 Striga asiatica HOM05D001088 ORTHO05D003028 1.6e-27 126.7 73 84.9
SGA_v2.0_scaffold14G07051 Striga asiatica HOM05D000499 ORTHO05D007471 3.8e-13 79.0 54 74.1
Migut.E00757 Erythranthe guttata HOM05D000227 ORTHO05D001491 5.0e-13 78.6 77 54.5
Peaxi162Scf00170g00820 Petunia axillaris HOM05D000227 ORTHO05D001491 1.9e-12 76.6 57 64.9
MSTRG.2002 Avicennia marina HOM05D000227 ORTHO05D001491 5.5e-12 75.1 77 50.6
Nitab4.5_0001595g0010 Nicotiana tabacum HOM05D000227 ORTHO05D001491 5.5e-12 75.1 57 63.2
Aqoxy4G02542 Aquilegia oxysepala HOM05D000227 ORTHO05D001491 7.2e-12 74.7 77 51.9
MSTRG.13741 Avicennia marina HOM05D000227 ORTHO05D001491 9.5e-12 74.3 77 51.9
ECA246G3425 Erigeron canadensis HOM05D000227 ORTHO05D001491 9.5e-12 74.3 77 50.6
Nitab4.5_0000529g0080 Nicotiana tabacum HOM05D000227 ORTHO05D001491 1.2e-11 73.9 57 61.4
SGA_v2.0_scaffold54G19443 Striga asiatica HOM05D000227 ORTHO05D001491 1.2e-11 73.9 77 51.9
Eucgr.D02220 Eucalyptus grandis HOM05D000227 ORTHO05D001491 1.6e-11 73.6 77 50.6
Sopen08g025070 Solanum pennellii HOM05D000227 ORTHO05D001491 1.6e-11 73.6 57 61.4
PGSC0003DMG400014797 Solanum tuberosum HOM05D000227 ORTHO05D001491 1.6e-11 73.6 57 61.4
CAN.G726.27 Capsicum annuum HOM05D000227 ORTHO05D001491 2.1e-11 73.2 77 50.6
Cc08_g03390 Coffea canephora HOM05D000227 ORTHO05D001491 2.1e-11 73.2 57 59.6
Lsat_1_v5_gn_3_19641 Lactuca sativa HOM05D002234 ORTHO05D001491 2.1e-11 73.2 77 49.4
Potri.001G138000 Populus trichocarpa HOM05D000227 ORTHO05D001491 2.1e-11 73.2 52 65.4
Potri.003G095700 Populus trichocarpa HOM05D000227 ORTHO05D001491 2.1e-11 73.2 52 65.4
QL09p023488 Quercus lobata HOM05D000227 ORTHO05D001491 2.7e-11 72.8 57 61.4
arahy.Tifrunner.gnm1.ann1.84KAU9 Arachis hypogaea HOM05D000227 ORTHO05D001491 3.6e-11 72.4 77 49.4
CiPaw.12G067400 Carya illinoinensis HOM05D000227 ORTHO05D001491 4.7e-11 72.0 64 53.1
PSO384G2873 Papaver somniferum HOM05D000227 ORTHO05D001491 4.7e-11 72.0 77 49.4
Lj2P233T22 Lonicera japonica HOM05D000227 ORTHO05D001491 6.1e-11 71.6 55 61.8
Ca_02437_v3 Cicer arietinum L. HOM05D000227 ORTHO05D001491 8.0e-11 71.2 55 60.0
Dinv28992 Davidia involucrata HOM05D000227 ORTHO05D001491 8.0e-11 71.2 52 63.5
Lalb_Chr05g0225781 Lupinus albus HOM05D000227 ORTHO05D001491 8.0e-11 71.2 57 57.9
Medtr8g066630 Medicago truncatula HOM05D000227 ORTHO05D001491 8.0e-11 71.2 55 60.0
Psat4g122920 Pisum sativum HOM05D000227 ORTHO05D001491 8.0e-11 71.2 55 60.0
CSS0004986 Camellia sinensis var. sinensis HOM05D000227 ORTHO05D001491 1.0e-10 70.9 52 63.5
HanXRQChr17g0538101 Helianthus annuus HOM05D000227 ORTHO05D001491 1.0e-10 70.9 77 48.1
PSO339G6712 Papaver somniferum HOM05D000227 ORTHO05D001491 1.0e-10 70.9 77 48.1
Sabra03G0064600 Salix brachista HOM05D000227 ORTHO05D001491 1.0e-10 70.9 52 63.5
VMungo0251G1114 Vigna mungo HOM05D000227 ORTHO05D001491 1.0e-10 70.9 55 60.0
Sc13g0010910 Simmondsia chinensis HOM05D000227 ORTHO05D001491 1.4e-10 70.5 57 57.9
Lj8P307T28 Lonicera japonica HOM05D000227 ORTHO05D001491 1.8e-10 70.1 52 61.5
Phvul.003G283800 Phaseolus vulgaris HOM05D000227 ORTHO05D001491 2.3e-10 69.7 55 58.2
Sabra01G0106800 Salix brachista HOM05D000227 ORTHO05D001491 2.3e-10 69.7 52 61.5
TAR636G3615 Trochodendron aralioides HOM05D000227 ORTHO05D001491 2.3e-10 69.7 55 60.0
Glyma.12G089800 Glycine max HOM05D000227 ORTHO05D001491 3.0e-10 69.3 52 63.5
Hma1.2p1_0572F.1_g181240 Hydrangea macrophylla HOM05D000227 ORTHO05D001491 3.0e-10 69.3 52 63.5
Hma1.2p1_0870F.1_g230840 Hydrangea macrophylla HOM05D000227 ORTHO05D001491 3.0e-10 69.3 57 54.4
Nn1g00188 Nelumbo nucifera HOM05D000227 ORTHO05D001491 3.0e-10 69.3 77 48.1
Cfa012500 Carpinus fangiana HOM05D000227 ORTHO05D001491 5.2e-10 68.6 64 51.6
Cfa016041 Carpinus fangiana HOM05D000227 ORTHO05D001491 5.2e-10 68.6 57 54.4
Haze_08161 Corylus avellana HOM05D000227 ORTHO05D001491 5.2e-10 68.6 64 51.6
Haze_08170 Corylus avellana HOM05D000227 ORTHO05D001491 5.2e-10 68.6 64 51.6
Lj4g0002548 Lotus japonicus HOM05D000227 ORTHO05D001491 5.2e-10 68.6 52 59.6
Rhsim11G0020000 Rhododendron simsii HOM05D000227 ORTHO05D001491 5.2e-10 68.6 52 61.5
vmacro00291 Vaccinium macrocarpon HOM05D000227 ORTHO05D001491 5.2e-10 68.6 52 61.5
vmacro00298 Vaccinium macrocarpon HOM05D000227 ORTHO05D001491 5.2e-10 68.6 52 61.5
CSS0020659 Camellia sinensis var. sinensis HOM05D000227 ORTHO05D001491 6.8e-10 68.2 52 61.5
CSS0033360 Camellia sinensis var. sinensis HOM05D000227 ORTHO05D001491 6.8e-10 68.2 52 61.5
Duzib205G1182 Durio zibethinus HOM05D000227 ORTHO05D001491 6.8e-10 68.2 77 48.1
ATR0829G175 Amborella trichopoda HOM05D000227 ORTHO05D001491 8.8e-10 67.8 77 46.8
COL.COLO4_16957 Corchorus olitorius HOM05D000227 ORTHO05D001491 8.8e-10 67.8 77 48.1
Dinv25248 Davidia involucrata HOM05D000227 ORTHO05D001491 8.8e-10 67.8 45 68.9
Lalb_Chr09g0334131 Lupinus albus HOM05D000227 ORTHO05D001491 8.8e-10 67.8 52 59.6
TPR.G3356 Trifolium pratense HOM05D000227 ORTHO05D001491 8.8e-10 67.8 52 59.6
Actinidia03348 Actinidia chinensis HOM05D000227 ORTHO05D001491 1.2e-09 67.4 52 57.7
Cfa012508 Carpinus fangiana HOM05D000227 ORTHO05D001491 1.2e-09 67.4 64 50.0
Duzib068G1096 Durio zibethinus HOM05D000227 ORTHO05D001491 1.2e-09 67.4 77 49.4
Nn8g39980 Nelumbo nucifera HOM05D000227 ORTHO05D001491 1.2e-09 67.4 114 41.2
Thecc.03G308700 Theobroma cacao HOM05D000227 ORTHO05D001491 1.2e-09 67.4 77 48.1
TAR629G3503 Trochodendron aralioides HOM05D000227 ORTHO05D001491 1.2e-09 67.4 52 59.6
Haze_00415 Corylus avellana HOM05D000227 ORTHO05D001491 1.5e-09 67.0 57 52.6
Glyma.11G182700 Glycine max HOM05D000227 ORTHO05D001491 1.5e-09 67.0 88 43.2
Gohir.A03G000039 Gossypium hirsutum HOM05D000227 ORTHO05D001491 1.5e-09 67.0 55 58.2
Gohir.D03G175600 Gossypium hirsutum HOM05D000227 ORTHO05D001491 1.5e-09 67.0 55 58.2
Gorai.003G184700 Gossypium raimondii HOM05D000227 ORTHO05D001491 1.5e-09 67.0 55 58.2
RcHm_v2.0_Chr7g0211631 Rosa chinensis HOM05D000227 ORTHO05D001491 1.5e-09 67.0 52 59.6
TWI60G1500 Tripterygium wilfordii HOM05D000227 ORTHO05D001491 1.5e-09 67.0 52 59.6
CDE03G0486 Ceratophyllum demersum HOM05D000227 ORTHO05D001491 2.0e-09 66.6 55 56.4
Gohir.D08G175025 Gossypium hirsutum HOM05D000227 ORTHO05D001491 2.0e-09 66.6 71 47.9
Gorai.004G182700 Gossypium raimondii HOM05D000227 ORTHO05D001491 2.0e-09 66.6 71 47.9
Manes.09G125300 Manihot esculenta HOM05D000227 ORTHO05D001491 2.0e-09 66.6 57 56.1
Peaxi162Scf00516g00618 Petunia axillaris HOM05D000227 ORTHO05D001491 2.0e-09 66.6 57 54.4
TWI15G1153 Tripterygium wilfordii HOM05D000227 ORTHO05D001491 2.0e-09 66.6 60 53.3
DCAR_008236 Daucus carota HOM05D000227 ORTHO05D001491 2.6e-09 66.2 49 59.2
QL12p001321 Quercus lobata HOM05D000227 ORTHO05D001491 2.6e-09 66.2 52 55.8
Cpa.g.sc90.10 Carica papaya HOM05D000227 ORTHO05D001491 4.4e-09 65.5 52 57.7
FAN15G0134 Fragaria x ananassa HOM05D000227 ORTHO05D001491 4.4e-09 65.5 52 57.7
MELO3C013829.2 Cucumis melo HOM05D000227 ORTHO05D001491 7.5e-09 64.7 115 38.3
CsaV3_3G001430 Cucumis sativus L. HOM05D000227 ORTHO05D001491 7.5e-09 64.7 115 38.3
MD06G1025600 Malus domestica HOM05D000227 ORTHO05D001491 7.5e-09 64.7 77 44.2
FvH4_2g21960 Fragaria vesca HOM05D000227 ORTHO05D001491 9.8e-09 64.3 52 55.8
FAN20G0259 Fragaria x ananassa HOM05D000227 ORTHO05D001491 9.8e-09 64.3 52 55.8
FAN24G1863 Fragaria x ananassa HOM05D000227 ORTHO05D001491 9.8e-09 64.3 52 55.8
Gohir.A08G154200 Gossypium hirsutum HOM05D000227 ORTHO05D001491 9.8e-09 64.3 49 59.2
Prupe.5G029500 Prunus persica HOM05D000227 ORTHO05D001491 9.8e-09 64.3 52 55.8
PGR031G2010 Punica granatum HOM05D000227 ORTHO05D001491 1.3e-08 63.9 57 56.1
Zm00001eb084880 Zea mays HOM05D001711 ORTHO05D002211 1.3e-08 63.9 87 44.8
Zm00001eb224870 Zea mays HOM05D000227 ORTHO05D001491 1.3e-08 63.9 77 45.5
Atru.chr6.1614 Acer truncatum HOM05D000227 ORTHO05D001491 1.7e-08 63.5 52 55.8
CiPaw.11G097600 Carya illinoinensis HOM05D000227 ORTHO05D001491 1.7e-08 63.5 57 50.9
ClCG10G001360 Citrullus lanatus HOM05D000227 ORTHO05D001491 1.7e-08 63.5 115 37.4
Ciclev10002732m.g Citrus clementina HOM05D000227 ORTHO05D001491 2.2e-08 63.2 52 55.8
HanXRQChr14g0446781 Helianthus annuus HOM05D000227 ORTHO05D001491 2.2e-08 63.2 67 49.3
Nn8g38611 Nelumbo nucifera HOM05D000227 ORTHO05D001491 2.2e-08 63.2 55 52.7
BolC1t05855H Brassica oleracea HOM05D000227 ORTHO05D001491 2.8e-08 62.8 57 54.4
FAN27G1116 Fragaria x ananassa HOM05D000227 ORTHO05D001491 2.8e-08 62.8 52 53.8
Gorai.008G224600 Gossypium raimondii HOM05D000227 ORTHO05D001491 2.8e-08 62.8 54 53.7
Carub.0003s0215 Capsella rubella HOM05D000227 ORTHO05D001491 3.7e-08 62.4 57 56.1
Sed0012807 Sechium edule HOM05D000227 ORTHO05D001491 3.7e-08 62.4 52 53.8
BcaNung03555 Brassica carinata HOM05D000227 ORTHO05D001491 4.9e-08 62.0 57 54.4
BNapus_Darmor_BZH_scaffold_129p00090 Brassica napus HOM05D000227 ORTHO05D001491 4.9e-08 62.0 57 54.4
BraA01t04600Z Brassica rapa HOM05D000227 ORTHO05D001491 4.9e-08 62.0 57 54.4
Thhalv10021666m.g Eutrema salsugineum HOM05D000227 ORTHO05D001491 1.1e-07 60.8 57 52.6
Os01g0505600 Oryza sativa ssp. japonica HOM05D000227 ORTHO05D001491 1.1e-07 60.8 77 41.6
CARHR077020 Cardamine hirsuta HOM05D000227 ORTHO05D001491 1.4e-07 60.5 57 52.6
AT3G03000 Arabidopsis thaliana HOM05D000227 ORTHO05D001491 1.8e-07 60.1 57 52.6
CDE02G2511 Ceratophyllum demersum HOM05D000227 ORTHO05D001491 1.8e-07 60.1 57 50.9
CDE11G0908 Ceratophyllum demersum HOM05D000227 ORTHO05D001491 2.4e-07 59.7 57 50.9
AL3G12460 Arabidopsis lyrata HOM05D000227 ORTHO05D001491 3.1e-07 59.3 52 57.7
THA.LOC104814420 Tarenaya hassleriana HOM05D000227 ORTHO05D001491 3.1e-07 59.3 55 50.9
THA.LOC104820889 Tarenaya hassleriana HOM05D000227 ORTHO05D001491 3.1e-07 59.3 57 52.6
CARHR031620 Cardamine hirsuta HOM05D000227 ORTHO05D001491 1.2e-06 57.4 55 52.7
CANSAT56G2817 Cannabis sativa HOM05D000227 ORTHO05D001491 2.0e-06 56.6 78 42.3
FAN10G2121 Fragaria x ananassa HOM05D000106 ORTHO05D002214 2.7e-06 56.2 80 42.5
DCAR_026198 Daucus carota HOM05D000227 ORTHO05D001491 3.5e-06 55.8 71 46.5
FvH4_7g34050 Fragaria vesca HOM05D000227 ORTHO05D001491 3.5e-06 55.8 80 42.5
FAN03G2571 Fragaria x ananassa HOM05D000106 ORTHO05D002214 3.5e-06 55.8 80 42.5
FAN03G3211 Fragaria x ananassa HOM05D000227 ORTHO05D001491 3.5e-06 55.8 80 42.5
Gohir.A12G206650 Gossypium hirsutum HOM05D000227 ORTHO05D001491 3.5e-06 55.8 62 46.8
FAN01G1331 Fragaria x ananassa HOM05D000227 ORTHO05D001491 4.5e-06 55.5 80 41.2
PGR102G2226 Punica granatum HOM05D000227 ORTHO05D001491 5.9e-06 55.1 45 57.8


User provided reference genes

Program Settings