Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold126G33837 Striga asiatica HOM05D004804 ORTHO05D005882 3.1e-259 897.9 444 100.0
MSTRG.5692 Avicennia marina HOM05D004804 ORTHO05D005882 9.1e-174 614.0 373 79.4
SalBow4G1685 Salvia bowleyana HOM05D004804 ORTHO05D005882 1.7e-167 593.2 369 79.4
SalBow1G1981 Salvia bowleyana HOM05D004804 ORTHO05D005882 2.2e-167 592.8 366 79.5
Migut.J00372 Erythranthe guttata HOM05D004804 ORTHO05D005882 1.4e-166 590.1 371 76.8
Migut.L01624 Erythranthe guttata HOM05D004804 ORTHO05D005882 1.8e-166 589.7 367 78.5
Oeu029811.2 Olea europaea HOM05D004804 ORTHO05D005882 5.5e-163 578.2 356 79.5
Gohir.D04G118600 Gossypium hirsutum HOM05D004804 ORTHO05D005882 2.1e-162 576.2 372 78.5
FvH4_6g14490 Fragaria vesca HOM05D004804 ORTHO05D005882 2.7e-162 575.9 372 76.3
Thecc.05G045900 Theobroma cacao HOM05D004804 ORTHO05D005882 1.0e-161 573.9 370 77.0
FAN02G1589 Fragaria x ananassa HOM05D004804 ORTHO05D005882 1.4e-161 573.5 372 74.7
Peaxi162Scf00039g00093 Petunia axillaris HOM05D004804 ORTHO05D005882 1.4e-161 573.5 369 76.7
RcHm_v2.0_Chr3g0467571 Rosa chinensis HOM05D004804 ORTHO05D005882 4.0e-161 572.0 369 76.2
Gohir.A04G079400 Gossypium hirsutum HOM05D004804 ORTHO05D005882 5.2e-161 571.6 372 78.2
Gorai.009G423800 Gossypium raimondii HOM05D004804 ORTHO05D005882 5.2e-161 571.6 373 78.0
Eucgr.K03171 Eucalyptus grandis HOM05D004804 ORTHO05D005882 1.2e-160 570.5 385 75.3
PGR004G0439 Punica granatum HOM05D004804 ORTHO05D005882 1.2e-160 570.5 372 76.1
CiPaw.09G187800 Carya illinoinensis HOM05D004804 ORTHO05D005882 1.3e-159 567.0 372 75.8
Cc06_g03070 Coffea canephora HOM05D004804 ORTHO05D005882 1.7e-159 566.6 390 74.1
COL.COLO4_14869 Corchorus olitorius HOM05D004804 ORTHO05D005882 1.7e-159 566.6 371 76.0
Solyc09g005700.3 Solanum lycopersicum HOM05D004804 ORTHO05D005882 2.2e-159 566.2 371 74.7
Duzib093G1125 Durio zibethinus HOM05D004804 ORTHO05D005882 2.8e-159 565.8 370 75.9
Hma1.2p1_1481F.1_g286070 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 3.7e-159 565.5 310 84.5
FAN09G0808 Fragaria x ananassa HOM05D004804 ORTHO05D005882 4.8e-159 565.1 368 75.8
Haze_20724 Corylus avellana HOM05D004804 ORTHO05D005882 6.3e-159 564.7 373 75.9
Nitab4.5_0002995g0070 Nicotiana tabacum HOM05D004804 ORTHO05D005882 5.3e-158 561.6 361 76.5
Ciclev10012025m.g Citrus clementina HOM05D004804 ORTHO05D005882 9.1e-158 560.8 368 75.3
GSVIVG01025612001 Vitis vinifera HOM05D004804 ORTHO05D005882 2.7e-157 559.3 308 84.1
MD12G1136700 Malus domestica HOM05D004804 ORTHO05D005882 5.9e-157 558.1 368 75.0
Manes.08G076545 Manihot esculenta HOM05D004804 ORTHO05D005882 5.9e-157 558.1 373 74.0
CAN.G125.11 Capsicum annuum HOM05D004804 ORTHO05D005882 1.3e-156 557.0 308 83.8
Lj2A100T74 Lonicera japonica HOM05D004804 ORTHO05D005882 1.7e-156 556.6 317 81.7
Sed0001519 Sechium edule HOM05D004804 ORTHO05D005882 1.7e-156 556.6 375 72.3
Cfa017439 Carpinus fangiana HOM05D004804 ORTHO05D005882 2.9e-156 555.8 381 73.8
Dinv37213 Davidia involucrata HOM05D004804 ORTHO05D005882 3.8e-156 555.4 368 74.5
Lsat_1_v5_gn_2_111181 Lactuca sativa HOM05D004804 ORTHO05D005882 3.2e-155 552.4 376 72.6
Hund13338 Selenicereus undatus HOM05D004804 ORTHO05D005882 4.2e-155 552.0 324 80.9
MD04G1119400 Malus domestica HOM05D004804 ORTHO05D005882 5.5e-155 551.6 368 73.1
CsaV3_4G024670 Cucumis sativus L. HOM05D004804 ORTHO05D005882 7.2e-155 551.2 368 73.1
ECA238G1409 Erigeron canadensis HOM05D004804 ORTHO05D005882 7.2e-155 551.2 369 72.6
QL07p046693 Quercus lobata HOM05D004804 ORTHO05D005882 7.2e-155 551.2 375 73.3
CANSAT80G2153 Cannabis sativa HOM05D004804 ORTHO05D005882 9.4e-155 550.8 374 72.7
Nn2g12889 Nelumbo nucifera HOM05D004804 ORTHO05D005882 2.1e-154 549.7 372 72.6
TWI53G1005 Tripterygium wilfordii HOM05D004804 ORTHO05D005882 4.7e-154 548.5 375 73.6
Atru.chr8.1921 Acer truncatum HOM05D004804 ORTHO05D005882 1.4e-153 547.0 373 71.8
TAR623G1260 Trochodendron aralioides HOM05D004804 ORTHO05D005882 3.0e-153 545.8 371 73.0
PSO339G6548 Papaver somniferum HOM05D004804 ORTHO05D005882 6.8e-153 544.7 340 75.3
Actinidia05292 Actinidia chinensis HOM05D004804 ORTHO05D005882 1.2e-152 543.9 372 73.4
PSO384G4865 Papaver somniferum HOM05D004804 ORTHO05D005882 2.6e-152 542.7 340 75.0
Aqoxy4G03017 Aquilegia oxysepala HOM05D004804 ORTHO05D005882 3.4e-152 542.3 381 70.9
FAN14G5408 Fragaria x ananassa HOM05D004804 ORTHO05D005882 5.7e-152 541.6 371 73.0
DCAR_009258 Daucus carota HOM05D004804 ORTHO05D005882 1.7e-151 540.0 371 72.8
Sc01g0003910 Simmondsia chinensis HOM05D004804 ORTHO05D005882 1.7e-151 540.0 371 71.2
Lalb_Chr25g0289471 Lupinus albus HOM05D004804 ORTHO05D005882 1.4e-150 537.0 367 69.5
Nitab4.5_0004851g0050 Nicotiana tabacum HOM05D004804 ORTHO05D005882 1.4e-150 537.0 483 59.2
EL10Ac2g02842 Beta vulgaris HOM05D004804 ORTHO05D005882 1.8e-150 536.6 369 72.4
Ah.10g030750 Amaranthus hybridus HOM05D004804 ORTHO05D005882 2.4e-150 536.2 309 81.2
Glyma.19G174300 Glycine max HOM05D004804 ORTHO05D005882 5.4e-150 535.0 369 69.1
Nitab4.5_0005039g0030 Nicotiana tabacum HOM05D004804 ORTHO05D005882 5.4e-150 535.0 387 70.5
Glyma.03G173400 Glycine max HOM05D004804 ORTHO05D005882 2.0e-149 533.1 369 69.6
Potri.006G102700 Populus trichocarpa HOM05D004804 ORTHO05D005882 2.0e-149 533.1 371 72.5
Phvul.001G170900 Phaseolus vulgaris HOM05D004804 ORTHO05D005882 3.5e-149 532.3 369 69.4
arahy.Tifrunner.gnm1.ann1.EYL599 Arachis hypogaea HOM05D004804 ORTHO05D005882 5.9e-149 531.6 369 71.0
Potri.016G120900 Populus trichocarpa HOM05D004804 ORTHO05D005882 5.9e-149 531.6 356 73.6
AUR62026834 Chenopodium quinoa HOM05D004804 ORTHO05D005882 1.0e-148 530.8 364 72.8
TPR.G21455 Trifolium pratense HOM05D004804 ORTHO05D005882 1.0e-148 530.8 370 68.6
THA.LOC104806587 Tarenaya hassleriana HOM05D004804 ORTHO05D005882 1.3e-148 530.4 370 71.4
ClCG04G008480 Citrullus lanatus HOM05D004804 ORTHO05D005882 2.3e-148 529.6 383 69.5
VMungo1383G1812 Vigna mungo HOM05D004804 ORTHO05D005882 3.8e-148 528.9 369 68.8
HanXRQChr14g0453791 Helianthus annuus HOM05D004804 ORTHO05D005882 6.6e-148 528.1 396 68.2
unitig_27.g24899 Utricularia gibba HOM05D002116 ORTHO05D005882 6.6e-148 528.1 360 70.8
BolC4t22652H Brassica oleracea HOM05D004804 ORTHO05D005882 8.6e-148 527.7 369 69.4
Medtr7g100345 Medicago truncatula HOM05D004804 ORTHO05D005882 1.9e-147 526.6 370 69.2
C04p10610 Brassica napus HOM05D004804 ORTHO05D005882 3.3e-147 525.8 369 69.1
Aa31LG5G22830 Aethionema arabicum HOM05D004804 ORTHO05D005882 7.2e-147 524.6 368 71.5
Rhsim05G0187300 Rhododendron simsii HOM05D004804 ORTHO05D005882 7.2e-147 524.6 398 66.1
A05p08530 Brassica napus HOM05D004804 ORTHO05D005882 9.5e-147 524.2 365 69.9
Thhalv10016845m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 9.5e-147 524.2 354 71.5
BraA05t19821Z Brassica rapa HOM05D004804 ORTHO05D005882 1.2e-146 523.9 365 69.9
AT3G53580 Arabidopsis thaliana HOM05D004804 ORTHO05D005882 2.1e-146 523.1 363 70.2
CDE08G0350 Ceratophyllum demersum HOM05D004804 ORTHO05D005882 1.0e-145 520.8 366 71.9
Ca_07739_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 1.0e-145 520.8 376 68.1
Carub.0005s2015 Capsella rubella HOM05D004804 ORTHO05D005882 1.8e-145 520.0 367 69.2
CARHR163490 Cardamine hirsuta HOM05D004804 ORTHO05D005882 3.0e-145 519.2 368 70.1
Thhalv10010477m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 4.0e-145 518.8 365 70.7
Lalb_Chr20g0113121 Lupinus albus HOM05D004804 ORTHO05D005882 5.2e-145 518.5 367 67.8
Ca_08795_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 1.5e-144 516.9 369 66.7
Sp5g08760 Schrenkiella parvula HOM05D004804 ORTHO05D005882 2.0e-144 516.5 365 69.9
AL5G34510 Arabidopsis lyrata HOM05D004804 ORTHO05D005882 2.6e-144 516.2 367 70.0
A07p21740 Brassica napus HOM05D004804 ORTHO05D005882 2.6e-144 516.2 364 70.6
BolC6t37342H Brassica oleracea HOM05D004804 ORTHO05D005882 2.6e-144 516.2 364 71.2
Sp4g19750 Schrenkiella parvula HOM05D004804 ORTHO05D005882 5.7e-144 515.0 354 70.1
Lj1g0023900 Lotus japonicus HOM05D004804 ORTHO05D005882 7.5e-144 514.6 371 67.7
BcaC08g44637 Brassica carinata HOM05D004804 ORTHO05D005882 9.8e-144 514.2 364 70.9
C06p21540 Brassica napus HOM05D004804 ORTHO05D005882 9.8e-144 514.2 364 70.9
BcaB01g00261 Brassica carinata HOM05D004804 ORTHO05D005882 1.7e-143 513.5 368 70.4
BraA09t40124Z Brassica rapa HOM05D004804 ORTHO05D005882 2.2e-143 513.1 374 69.5
BcaB02g07773 Brassica carinata HOM05D004804 ORTHO05D005882 6.3e-143 511.5 365 69.9
A09p46600 Brassica napus HOM05D004804 ORTHO05D005882 6.3e-143 511.5 372 69.9
BraA07t29856Z Brassica rapa HOM05D004804 ORTHO05D005882 6.3e-143 511.5 365 70.4
Zm00001eb136710 Zea mays HOM05D004804 ORTHO05D005882 3.5e-141 505.8 308 77.3
C08p28920 Brassica napus HOM05D004804 ORTHO05D005882 5.0e-140 501.9 368 69.3
Actinidia19758 Actinidia chinensis HOM05D004804 ORTHO05D001149 1.9e-139 500.0 372 69.1
CSS0039312 Camellia sinensis var. sinensis HOM05D004804 ORTHO05D001149 1.4e-137 493.8 333 74.5
HPP92_019459 Vanilla planifolia HOM05D004804 ORTHO05D005882 9.8e-136 487.6 371 65.5
ATR0033G037 Amborella trichopoda HOM05D004804 ORTHO05D005882 3.2e-134 482.6 300 72.7
MELO3C003100.2 Cucumis melo HOM05D004804 ORTHO05D005882 1.6e-133 480.3 396 63.4
vmacro20115 Vaccinium macrocarpon HOM05D004804 ORTHO05D005882 1.3e-132 477.2 311 73.6
Sabra06G0079000 Salix brachista HOM05D004804 ORTHO05D005882 4.4e-128 462.2 277 79.1
AUR62037218 Chenopodium quinoa HOM05D004804 ORTHO05D005882 1.3e-127 460.7 325 72.0
Psat3g121680 Pisum sativum HOM05D004804 ORTHO05D005882 6.4e-127 458.4 331 68.9
BcaNung07017 Brassica carinata HOM05D004804 ORTHO05D005882 4.3e-123 445.7 343 68.2
SMO118G0282 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 1.4e-118 430.6 282 70.9
AagrBONN_evm.TU.Sc2ySwM_228.1472 Anthoceros agrestis HOM05D004804 ORTHO05D005882 1.0e-116 424.5 335 60.9
Sopen09g001590 Solanum pennellii HOM05D004804 ORTHO05D005882 3.3e-115 419.5 287 71.8
Mapoly0001s0200 Marchantia polymorpha HOM05D004804 ORTHO05D005882 1.6e-114 417.2 282 68.8
BcaNung07160 Brassica carinata HOM05D004804 ORTHO05D005882 4.0e-113 412.5 352 63.1
BcaC07g39720 Brassica carinata HOM05D004804 ORTHO05D005882 1.0e-108 397.9 328 64.6
Pp3c10_3520 Physcomitrium patens HOM05D004804 ORTHO05D005882 4.3e-107 392.5 283 65.0
AUR62038459 Chenopodium quinoa HOM05D004804 ORTHO05D005882 1.3e-106 391.0 244 75.0
Cre05.g237400 Chlamydomonas reinhardtii HOM05D004804 ORTHO05D005882 2.8e-106 389.8 287 64.8
MCO16G320 Micromonas commoda HOM05D004804 ORTHO05D005882 1.5e-99 367.5 290 60.7
Prupe.6G249100 Prunus persica HOM05D004804 ORTHO05D005882 9.6e-99 364.8 260 72.3
Zm00001eb028810 Zea mays HOM05D004804 ORTHO05D005882 8.1e-98 361.7 243 68.3
Cpa.g.c31068.3 Carica papaya HOM05D004804 ORTHO05D005882 5.6e-91 339.0 259 66.8
SMO116G0240 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 3.7e-90 336.3 294 55.1
BolC8t50494H Brassica oleracea HOM05D004804 ORTHO05D005882 5.8e-88 328.9 318 58.5
PRCOL_00004448 Prasinoderma coloniale HOM05D004804 ORTHO05D005882 7.6e-88 328.6 288 58.7
Cpa.g.c30481.1 Carica papaya HOM05D004804 ORTHO05D005882 3.5e-77 293.1 168 82.1
MD07G1084600 Malus domestica HOM05D004804 ORTHO05D005882 1.5e-75 287.7 159 83.0
Medtr7g072350 Medicago truncatula HOM05D004804 ORTHO05D005882 1.3e-66 258.1 229 55.5
FvH4_5g27660 Fragaria vesca HOM05D004804 ORTHO05D005882 1.5e-59 234.6 131 80.2
MD07G1085800 Malus domestica HOM05D004804 ORTHO05D005882 4.1e-57 226.5 127 81.1
AUR62014235 Chenopodium quinoa HOM05D004804 ORTHO05D005882 1.2e-53 214.9 327 43.7
BcaC05g25676 Brassica carinata HOM05D004804 ORTHO05D005882 2.6e-51 207.2 147 68.0
FAN18G1921 Fragaria x ananassa HOM05D004804 ORTHO05D005882 3.0e-44 183.7 100 82.0
BcaC03g18267 Brassica carinata HOM05D004804 ORTHO05D005882 5.2e-44 183.0 214 49.1
BcaC03g18268 Brassica carinata HOM05D004804 ORTHO05D005882 1.3e-42 178.3 147 61.2
SEGI_18757 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 2.7e-40 170.6 127 61.4
BcaC01g02299 Brassica carinata HOM05D004804 ORTHO05D005882 6.1e-37 159.5 147 53.7
SEGI_29945 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 5.4e-33 146.4 110 60.0
Hma1.2p1_0683F.1_g202920 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 7.2e-30 136.0 72 87.5
MSTRG.19109 Avicennia marina HOM05D004804 ORTHO05D005882 5.7e-27 126.3 104 56.7
Atru.chr5.1411 Acer truncatum HOM05D004804 ORTHO05D005882 4.0e-20 103.6 57 78.9
SEGI_13543 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 2.6e-19 100.9 60 78.3
C03p66890 Brassica napus HOM05D004804 ORTHO05D005882 4.1e-17 93.6 67 64.2
BolC3t18959H Brassica oleracea HOM05D004804 ORTHO05D005882 4.1e-17 93.6 67 64.2
BolC5t30247H Brassica oleracea HOM05D003490 ORTHO05D039708 1.7e-15 88.2 45 77.8
C03p66880 Brassica napus HOM05D004804 ORTHO05D005882 3.9e-15 87.0 45 77.8
BolC3t18958H Brassica oleracea HOM05D004804 ORTHO05D005882 6.6e-15 86.3 44 79.5
FAN13G1509 Fragaria x ananassa HOM05D004804 ORTHO05D022561 1.1e-12 79.0 41 80.5
SGA_v2.0_scaffold594G53100 Striga asiatica HOM05D004804 ORTHO05D005882 6.8e-12 76.3 58 63.8
Rhsim01G0214400 Rhododendron simsii HOM05D004804 ORTHO05D000007 1.2e-11 75.5 35 91.4
Oeu030496.1 Olea europaea HOM05D004804 ORTHO05D005882 3.4e-11 73.9 97 52.6
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 6.4e-10 69.7 40 82.5
CBR_g29560 Chara braunii HOM05D002780 ORTHO05D005882 8.6e-07 59.3 117 29.1


User provided reference genes

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