Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold126G33811 Striga asiatica HOM05D001886 ORTHO05D005666 6.4e-194 680.6 362 100.0
Migut.J00351 Erythranthe guttata HOM05D001886 ORTHO05D005666 1.9e-137 493.0 434 65.9
SalBow3G2787 Salvia bowleyana HOM05D001886 ORTHO05D005666 3.4e-134 482.3 436 63.3
MSTRG.5681 Avicennia marina HOM05D001886 ORTHO05D005666 4.7e-128 461.8 432 62.5
PGSC0003DMG400008924 Solanum tuberosum HOM05D001886 ORTHO05D005666 3.2e-116 422.5 437 57.7
Solyc09g010470.3 Solanum lycopersicum HOM05D001886 ORTHO05D005666 3.9e-114 415.6 432 57.4
Sopen09g005210 Solanum pennellii HOM05D001886 ORTHO05D005666 3.9e-114 415.6 432 57.2
CAN.G97.10 Capsicum annuum HOM05D001886 ORTHO05D005666 3.3e-113 412.5 434 56.5
Oeu036169.1 Olea europaea HOM05D001886 ORTHO05D005666 4.3e-113 412.1 430 55.3
QL07p047480 Quercus lobata HOM05D001886 ORTHO05D005666 3.6e-112 409.1 433 55.7
QL05p010709 Quercus lobata HOM05D001886 ORTHO05D005666 4.7e-112 408.7 433 55.7
TAR633G2154 Trochodendron aralioides HOM05D001886 ORTHO05D005666 6.2e-112 408.3 428 55.6
Ciclev10011745m.g Citrus clementina HOM05D001886 ORTHO05D005666 6.8e-111 404.8 433 55.2
CiPaw.09G189500 Carya illinoinensis HOM05D001886 ORTHO05D005666 3.4e-110 402.5 432 56.0
Hma1.2p1_1481F.1_g286150 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 1.7e-109 400.2 436 55.0
Cfa017420 Carpinus fangiana HOM05D001886 ORTHO05D005666 3.7e-109 399.1 430 54.9
DCAR_009246 Daucus carota HOM05D001886 ORTHO05D005666 8.3e-109 397.9 430 52.8
Oeu036166.1 Olea europaea HOM05D001886 ORTHO05D005666 1.1e-108 397.5 433 54.7
CSS0014030 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.9e-108 396.7 433 54.3
CSS0002297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.4e-108 396.4 432 55.6
MD04G1123400 Malus domestica HOM05D001886 ORTHO05D005666 1.2e-107 394.0 434 55.5
Oeu060049.1 Olea europaea HOM05D001886 ORTHO05D005666 1.6e-107 393.7 418 58.4
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 2.1e-107 393.3 428 54.7
COL.COLO4_14849 Corchorus olitorius HOM05D001886 ORTHO05D005666 7.8e-107 391.3 428 53.3
Lsat_1_v5_gn_2_111601 Lactuca sativa HOM05D001886 ORTHO05D005666 7.8e-107 391.3 432 53.5
Manes.09G087100 Manihot esculenta HOM05D001886 ORTHO05D005666 7.8e-107 391.3 434 54.1
TWI74G1177 Tripterygium wilfordii HOM05D001886 ORTHO05D005666 1.3e-106 390.6 437 52.2
Gohir.A09G158000 Gossypium hirsutum HOM05D001886 ORTHO05D005666 1.7e-106 390.2 428 54.2
GSVIVG01025523001 Vitis vinifera HOM05D001886 ORTHO05D005666 3.0e-106 389.4 432 53.9
Duzib093G1847 Durio zibethinus HOM05D001886 ORTHO05D005666 8.6e-106 387.9 428 54.2
ECA238G4795 Erigeron canadensis HOM05D001886 ORTHO05D005666 8.6e-106 387.9 429 52.4
Prupe.6G251100 Prunus persica HOM05D001886 ORTHO05D005666 1.1e-105 387.5 433 54.5
Gorai.006G174800 Gossypium raimondii HOM05D001886 ORTHO05D005666 2.5e-105 386.3 428 54.2
Haze_20750 Corylus avellana HOM05D001886 ORTHO05D005666 9.5e-105 384.4 404 56.2
Gohir.D09G153300 Gossypium hirsutum HOM05D001886 ORTHO05D005666 1.2e-104 384.0 428 53.7
Aqoxy2G02037 Aquilegia oxysepala HOM05D001886 ORTHO05D005666 2.1e-104 383.3 416 52.9
HanXRQChr07g0196201 Helianthus annuus HOM05D001886 ORTHO05D005666 4.7e-104 382.1 437 51.5
MD12G1139300 Malus domestica HOM05D001886 ORTHO05D005666 6.2e-104 381.7 431 53.6
CANSAT35G0217 Cannabis sativa HOM05D001886 ORTHO05D005666 1.8e-103 380.2 431 52.9
CSS0019310 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 5.2e-103 378.6 432 53.0
unitig_578.g15699 Utricularia gibba HOM05D001886 ORTHO05D005666 5.2e-103 378.6 435 52.4
Carub.0003s0857 Capsella rubella HOM05D001886 ORTHO05D005666 1.2e-102 377.5 427 52.7
Sc20g0004960 Simmondsia chinensis HOM05D001886 ORTHO05D005666 3.4e-102 375.9 425 51.8
RcHm_v2.0_Chr3g0467171 Rosa chinensis HOM05D001886 ORTHO05D005666 5.8e-102 375.2 434 52.8
THA.LOC104823252 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 7.6e-102 374.8 426 51.6
AL3G20650 Arabidopsis lyrata HOM05D001886 ORTHO05D005666 2.2e-101 373.2 429 52.2
FvH4_6g14211 Fragaria vesca HOM05D001886 ORTHO05D005666 2.2e-101 373.2 437 52.9
FAN05G4892 Fragaria x ananassa HOM05D001886 ORTHO05D005666 4.9e-101 372.1 436 52.5
Nitab4.5_0002077g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 4.9e-101 372.1 435 52.2
Potri.006G083700 Populus trichocarpa HOM05D001886 ORTHO05D005666 6.4e-101 371.7 432 52.8
AT3G09470 Arabidopsis thaliana HOM05D001886 ORTHO05D005666 1.1e-100 370.9 429 52.0
Sabra06G0063300 Salix brachista HOM05D001886 ORTHO05D005666 1.4e-100 370.5 432 52.3
Medtr7g099890 Medicago truncatula HOM05D001886 ORTHO05D005666 1.6e-99 367.1 441 50.6
Thhalv10020764m.g Eutrema salsugineum HOM05D001886 ORTHO05D005666 1.0e-98 364.4 427 51.5
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 1.0e-98 364.4 424 50.0
MELO3C009272.2 Cucumis melo HOM05D001886 ORTHO05D005666 8.6e-98 361.3 429 50.3
CsaV3_3G035030 Cucumis sativus L. HOM05D001886 ORTHO05D005666 8.6e-98 361.3 429 50.1
Aa31LG3G1960 Aethionema arabicum HOM05D001886 ORTHO05D005666 5.6e-97 358.6 428 50.9
Hund10629 Selenicereus undatus HOM05D001886 ORTHO05D005666 9.6e-97 357.8 431 50.1
ClCG10G020980 Citrullus lanatus HOM05D001886 ORTHO05D005666 1.6e-96 357.1 431 49.4
ClCG00G003200 Citrullus lanatus HOM05D001886 ORTHO05D005666 2.1e-96 356.7 431 49.2
Cc06_g02890 Coffea canephora HOM05D001886 ORTHO05D005666 2.1e-96 356.7 436 50.9
Ca_08782_v3 Cicer arietinum L. HOM05D001886 ORTHO05D005666 3.6e-96 355.9 440 49.3
Nitab4.5_0003267g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 3.6e-96 355.9 386 54.7
PSO339G5853 Papaver somniferum HOM05D001886 ORTHO05D005666 3.6e-96 355.9 436 49.8
Peaxi162Scf00039g01233 Petunia axillaris HOM05D001886 ORTHO05D005666 3.6e-96 355.9 400 54.2
Sp3g07840 Schrenkiella parvula HOM05D001886 ORTHO05D005666 6.2e-96 355.1 427 50.1
TPR.G21472 Trifolium pratense HOM05D002608 ORTHO05D005666 8.1e-96 354.8 417 50.4
Atru.chr8.1947 Acer truncatum HOM05D001886 ORTHO05D005666 1.4e-95 354.0 430 50.2
Lj2A99T56 Lonicera japonica HOM05D001886 ORTHO05D005666 1.4e-95 354.0 369 55.0
C05p58560 Brassica napus HOM05D001886 ORTHO05D005666 3.1e-95 352.8 430 50.0
BolC5t34506H Brassica oleracea HOM05D001886 ORTHO05D005666 3.1e-95 352.8 430 50.2
Lalb_Chr01g0019241 Lupinus albus HOM05D001886 ORTHO05D005666 4.0e-95 352.4 441 48.1
BraA05t22734Z Brassica rapa HOM05D001886 ORTHO05D005666 5.2e-95 352.1 430 50.0
A05p39530 Brassica napus HOM05D001886 ORTHO05D005666 6.9e-95 351.7 430 49.8
AUR62041035 Chenopodium quinoa HOM05D001886 ORTHO05D005666 2.6e-94 349.7 428 49.1
PSO339G4978 Papaver somniferum HOM05D001886 ORTHO05D005666 2.6e-94 349.7 424 49.8
PSO339G5613 Papaver somniferum HOM05D001886 ORTHO05D005666 2.6e-94 349.7 424 49.8
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 3.4e-94 349.4 444 48.9
Hma1.2p1_1707F.1_g298500 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 2.2e-93 346.7 467 48.8
PGR004G0312 Punica granatum HOM05D001886 ORTHO05D005666 2.9e-93 346.3 449 49.0
PGR004G0538 Punica granatum HOM05D001886 ORTHO05D005666 4.9e-93 345.5 449 49.0
Hma1.2p1_1065F.1_g253710 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 6.4e-93 345.1 439 49.7
BcaC05g29675 Brassica carinata HOM05D001886 ORTHO05D005666 1.1e-92 344.4 429 50.1
Sed0005778 Sechium edule HOM05D001886 ORTHO05D005666 1.1e-92 344.4 427 49.4
VMungo1383G3275 Vigna mungo HOM05D001886 ORTHO05D005666 1.4e-92 344.0 443 48.8
ATR0559G352 Amborella trichopoda HOM05D001886 ORTHO05D005666 7.1e-92 341.7 428 48.6
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 7.1e-92 341.7 425 48.9
Phvul.001G169800 Phaseolus vulgaris HOM05D001886 ORTHO05D005666 7.1e-92 341.7 443 48.5
Prupe.6G251000 Prunus persica HOM05D001886 ORTHO05D005666 7.1e-92 341.7 434 48.2
Glyma.03G172100 Glycine max HOM05D001886 ORTHO05D005666 2.1e-91 340.1 443 47.4
PSO648G0053 Papaver somniferum HOM05D001886 ORTHO05D005666 2.7e-91 339.7 424 48.6
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 4.6e-91 339.0 418 48.8
Medtr7g099910 Medicago truncatula HOM05D001886 ORTHO05D005666 4.6e-91 339.0 439 47.4
Glyma.19G173000 Glycine max HOM05D001886 ORTHO05D005666 7.8e-91 338.2 447 47.4
FAN09G0883 Fragaria x ananassa HOM05D002354 ORTHO05D005666 3.9e-90 335.9 426 49.1
FAN09G1438 Fragaria x ananassa HOM05D001886 ORTHO05D005666 6.6e-90 335.1 519 43.7
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 1.5e-89 334.0 438 47.3
Lalb_Chr20g0113251 Lupinus albus HOM05D001886 ORTHO05D005666 2.5e-89 333.2 402 49.8
THA.LOC104816289 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 2.5e-89 333.2 413 47.9
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 4.3e-89 332.4 422 50.5
FvH4_6g14220 Fragaria vesca HOM05D001886 ORTHO05D005666 4.3e-89 332.4 433 48.3
Ah.12g062350 Amaranthus hybridus HOM05D001886 ORTHO05D005666 7.3e-89 331.6 434 46.5
MD04G1123300 Malus domestica HOM05D001886 ORTHO05D005666 1.6e-88 330.5 428 47.9
Lj1g0014450 Lotus japonicus HOM05D001886 ORTHO05D005666 8.1e-88 328.2 434 47.2
FAN14G0919 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.4e-87 327.4 433 47.8
RcHm_v2.0_Chr3g0467181 Rosa chinensis HOM05D001886 ORTHO05D005666 1.8e-87 327.0 431 48.0
Zm00001eb028780 Zea mays HOM05D001886 ORTHO05D005666 1.3e-85 320.9 447 46.1
Psat3g049200 Pisum sativum HOM05D001886 ORTHO05D005666 1.7e-85 320.5 413 47.7
Lj1g0019565 Lotus japonicus HOM05D001886 ORTHO05D005666 2.9e-85 319.7 420 47.6
Nn2g10428 Nelumbo nucifera HOM05D001886 ORTHO05D005666 1.1e-84 317.8 434 47.9
Os12g0566900 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 1.9e-84 317.0 409 48.2
Rhsim04G0155900 Rhododendron simsii HOM05D001886 ORTHO05D005666 1.6e-83 313.9 444 47.3
Dinv37200 Davidia involucrata HOM05D001886 ORTHO05D005666 1.0e-82 311.2 316 58.9
Actinidia05302 Actinidia chinensis HOM05D001886 ORTHO05D005666 1.3e-82 310.8 396 50.3
Sed0018380 Sechium edule HOM05D001886 ORTHO05D005666 3.0e-82 309.7 386 47.4
HPP92_018059 Vanilla planifolia HOM05D001886 ORTHO05D005666 5.1e-82 308.9 423 45.6
CDE07G1313 Ceratophyllum demersum HOM05D001886 ORTHO05D005666 1.9e-81 307.0 399 44.9
FAN09G1880 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.9e-81 307.0 426 47.2
arahy.Tifrunner.gnm1.ann1.QN2KEZ Arachis hypogaea HOM05D001886 ORTHO05D005666 7.6e-78 295.0 432 44.7
vmacro08662 Vaccinium macrocarpon HOM05D001886 ORTHO05D005666 1.9e-73 280.4 333 50.8
TPR.G21468 Trifolium pratense HOM05D001886 ORTHO05D005666 4.3e-73 279.3 342 48.5
Migut.O00944 Erythranthe guttata HOM05D001886 ORTHO05D005666 3.4e-70 269.6 281 60.5
AUR62041759 Chenopodium quinoa HOM05D001886 ORTHO05D005666 5.8e-70 268.9 430 42.8
CSS0035971 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 7.1e-68 261.9 430 44.4
Lj2A2G29 Lonicera japonica HOM05D001886 ORTHO05D005666 1.9e-65 253.8 359 48.2
Psat3g049040 Pisum sativum HOM05D001886 ORTHO05D005666 2.7e-59 233.4 251 52.2
EL10As1g23100 Beta vulgaris HOM05D001886 ORTHO05D005666 5.1e-58 229.2 245 51.0
Mapoly0179s0003 Marchantia polymorpha HOM05D001886 ORTHO05D005666 1.0e-50 204.9 408 32.6
SEGI_05360 Sequoiadendron giganteum HOM05D001886 ORTHO05D005666 1.5e-49 201.1 229 49.3
Actinidia13133 Actinidia chinensis HOM05D001886 ORTHO05D005666 5.7e-49 199.1 178 59.0
Pp3c8_1230 Physcomitrium patens HOM05D001886 ORTHO05D005666 2.2e-48 197.2 407 34.2
CARHR083890 Cardamine hirsuta HOM05D001886 ORTHO05D005666 9.1e-47 191.8 177 56.5
CARHR083880 Cardamine hirsuta HOM05D001886 ORTHO05D005666 5.5e-44 182.6 249 48.6
Actinidia13134 Actinidia chinensis HOM05D001886 ORTHO05D005666 1.6e-43 181.0 140 71.4
CSS0044683 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 5.7e-41 172.6 137 70.8
Gohir.D04G119800 Gossypium hirsutum HOM05D001886 ORTHO05D005666 8.2e-40 168.7 359 38.7
CSS0017297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 3.1e-39 166.8 135 71.1
Os12g0566800 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 4.2e-36 156.4 176 48.9
HPP92_018052 Vanilla planifolia HOM05D001886 ORTHO05D005666 6.7e-34 149.1 135 57.0
ATR0559G335 Amborella trichopoda HOM05D001886 ORTHO05D005666 2.6e-33 147.1 167 48.5
MD12G1139100 Malus domestica HOM05D001886 ORTHO05D005666 2.5e-28 130.6 93 68.8
AagrBONN_evm.TU.Sc2ySwM_362.1966 Anthoceros agrestis HOM05D001886 ORTHO05D005666 2.6e-25 120.6 93 58.1
FAN02G0854 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.0e-18 98.6 126 49.2
FAN11G3241 Fragaria x ananassa HOM05D001164 ORTHO05D001031 1.0e-18 98.6 79 69.6
MD12G1139200 Malus domestica HOM05D001886 ORTHO05D005666 6.8e-18 95.9 222 36.0
AagrBONN_evm.TU.Sc2ySwM_362.1965 Anthoceros agrestis HOM05D001886 ORTHO05D005666 1.2e-14 85.1 102 48.0
TAR636G1555 Trochodendron aralioides HOM05D001886 ORTHO05D005666 2.5e-12 77.4 124 42.7
Psat3g053880 Pisum sativum HOM05D000335 ORTHO05D005666 3.3e-12 77.0 72 63.9
BcaC05g29677 Brassica carinata HOM05D001886 ORTHO05D005666 3.6e-11 73.6 110 41.8
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 2.7e-06 57.4 136 26.5
Lsat_1_v5_gn_7_25540 Lactuca sativa HOM05D001886 ORTHO05D005666 3.5e-06 57.0 55 49.1
FAN05G0933 Fragaria x ananassa HOM05D001164 ORTHO05D001031 6.0e-06 56.2 38 71.1


User provided reference genes

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