Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold126G33793 Striga asiatica HOM05D003527 ORTHO05D004099 4.2e-78 294.7 154 100.0
MSTRG.19089 Avicennia marina HOM05D003527 ORTHO05D004099 3.3e-46 188.7 164 65.2
MSTRG.5670 Avicennia marina HOM05D003527 ORTHO05D004099 6.8e-44 181.0 163 63.8
Migut.J00336 Erythranthe guttata HOM05D003527 ORTHO05D004099 1.5e-38 163.3 163 66.9
Ciclev10012740m.g Citrus clementina HOM05D003527 ORTHO05D004099 3.3e-38 162.2 162 60.5
Peaxi162Scf00165g01520 Petunia axillaris HOM05D003527 ORTHO05D004099 1.1e-36 157.1 162 55.6
TWI74G0830 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 2.0e-35 152.9 155 58.1
Oeu024354.1 Olea europaea HOM05D003527 ORTHO05D004099 2.6e-35 152.5 169 56.2
Thecc.05G040900 Theobroma cacao HOM05D003527 ORTHO05D004099 7.6e-35 151.0 163 57.1
Cc06_g02720 Coffea canephora HOM05D003527 ORTHO05D004099 9.9e-35 150.6 165 54.5
GSVIVG01034186001 Vitis vinifera HOM05D003527 ORTHO05D004099 1.7e-34 149.8 160 57.5
Rhsim05G0191500 Rhododendron simsii HOM05D003527 ORTHO05D004099 6.4e-34 147.9 162 54.9
Lj2A96T67 Lonicera japonica HOM05D003527 ORTHO05D004099 8.4e-34 147.5 172 51.7
QL07p048124 Quercus lobata HOM05D003527 ORTHO05D004099 8.4e-34 147.5 157 56.7
SalBow3G4662 Salvia bowleyana HOM05D003527 ORTHO05D004099 1.1e-33 147.1 153 59.5
vmacro20143 Vaccinium macrocarpon HOM05D003527 ORTHO05D004099 1.1e-33 147.1 162 55.6
ClCG02G020230 Citrullus lanatus HOM05D003527 ORTHO05D004099 1.4e-33 146.7 160 55.0
MELO3C025924.2 Cucumis melo HOM05D003527 ORTHO05D004099 2.4e-33 146.0 158 55.7
CsaV3_6G016930 Cucumis sativus L. HOM05D003527 ORTHO05D004099 4.1e-33 145.2 158 55.7
Manes.04G034300 Manihot esculenta HOM05D003527 ORTHO05D004099 4.1e-33 145.2 161 52.2
Sed0026502 Sechium edule HOM05D003527 ORTHO05D004099 4.1e-33 145.2 161 53.4
GSVIVG01024982001 Vitis vinifera HOM05D003527 ORTHO05D004099 7.1e-33 144.4 133 58.6
Dinv37181 Davidia involucrata HOM05D003527 ORTHO05D004099 1.2e-32 143.7 134 63.4
CSS0027996 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 3.5e-32 142.1 173 53.2
TAR636G1653 Trochodendron aralioides HOM05D003527 ORTHO05D004099 3.5e-32 142.1 160 50.6
Manes.08G081800 Manihot esculenta HOM05D003527 ORTHO05D004099 6.0e-32 141.4 160 55.6
Thecc.09G322900 Theobroma cacao HOM05D003527 ORTHO05D004099 7.8e-32 141.0 157 54.8
Atru.chr8.1961 Acer truncatum HOM05D003527 ORTHO05D004099 1.0e-31 140.6 160 55.6
Duzib128G0537 Durio zibethinus HOM05D003527 ORTHO05D004099 1.7e-31 139.8 160 53.8
Glyma.03G082900 Glycine max HOM05D003527 ORTHO05D004099 1.7e-31 139.8 122 64.8
Hma1.2p1_1513F.1_g288070 Hydrangea macrophylla HOM05D003527 ORTHO05D004099 2.3e-31 139.4 162 53.1
TAR633G1470 Trochodendron aralioides HOM05D003527 ORTHO05D004099 2.3e-31 139.4 164 52.4
Lj3g0018686 Lotus japonicus HOM05D003527 ORTHO05D004099 3.0e-31 139.0 156 52.6
Cpa.g.sc81.162 Carica papaya HOM05D003527 ORTHO05D004099 5.1e-31 138.3 161 50.3
COL.COLO4_14818 Corchorus olitorius HOM05D003527 ORTHO05D004099 6.6e-31 137.9 163 57.1
Duzib168G1608 Durio zibethinus HOM05D003527 ORTHO05D004099 6.6e-31 137.9 160 53.1
TWI31G0174 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 6.6e-31 137.9 159 53.5
Haze_20770 Corylus avellana HOM05D003527 ORTHO05D004099 2.5e-30 136.0 151 56.3
Manes.11G131300 Manihot esculenta HOM05D003527 ORTHO05D004099 4.3e-30 135.2 158 48.7
FAN09G0639 Fragaria x ananassa HOM05D003527 ORTHO05D004099 1.2e-29 133.7 170 48.2
Gohir.A07G097950 Gossypium hirsutum HOM05D003527 ORTHO05D004099 1.2e-29 133.7 165 49.7
Haze_24084 Corylus avellana HOM05D003527 ORTHO05D004099 1.6e-29 133.3 156 55.8
Gohir.D05G096200 Gossypium hirsutum HOM05D003527 ORTHO05D004099 1.6e-29 133.3 156 53.8
Potri.009G030100 Populus trichocarpa HOM05D003527 ORTHO05D004099 1.6e-29 133.3 161 49.7
Prupe.6G079000 Prunus persica HOM05D003527 ORTHO05D004099 1.6e-29 133.3 160 52.5
Ciclev10029234m.g Citrus clementina HOM05D003527 ORTHO05D004099 2.1e-29 132.9 177 47.5
Glyma.18G176700 Glycine max HOM05D003527 ORTHO05D004099 2.1e-29 132.9 120 60.0
Potri.001G238900 Populus trichocarpa HOM05D003527 ORTHO05D004099 2.1e-29 132.9 161 49.7
CiPaw.09G191600 Carya illinoinensis HOM05D003527 ORTHO05D004099 3.6e-29 132.1 132 61.4
FAN02G4097 Fragaria x ananassa HOM05D003527 ORTHO05D004099 3.6e-29 132.1 167 49.1
FAN25G2547 Fragaria x ananassa HOM05D003527 ORTHO05D004099 3.6e-29 132.1 161 52.2
Gohir.D07G102300 Gossypium hirsutum HOM05D003527 ORTHO05D004099 3.6e-29 132.1 165 49.1
Potri.006G084400 Populus trichocarpa HOM05D003527 ORTHO05D004099 3.6e-29 132.1 165 54.5
Sc12g0001550 Simmondsia chinensis HOM05D003527 ORTHO05D004099 3.6e-29 132.1 163 50.9
QL01p032299 Quercus lobata HOM05D003527 ORTHO05D004099 4.7e-29 131.7 157 52.2
FAN05G0377 Fragaria x ananassa HOM05D003527 ORTHO05D004099 6.2e-29 131.3 170 47.6
FAN09G3248 Fragaria x ananassa HOM05D003527 ORTHO05D004099 6.2e-29 131.3 170 47.6
Gorai.009G099700 Gossypium raimondii HOM05D003527 ORTHO05D004099 6.2e-29 131.3 156 53.8
Nn5g26928 Nelumbo nucifera HOM05D003527 ORTHO05D004099 6.2e-29 131.3 171 48.0
Gorai.001G110200 Gossypium raimondii HOM05D003527 ORTHO05D004099 8.1e-29 131.0 165 48.5
FvH4_6g13980 Fragaria vesca HOM05D003527 ORTHO05D004099 1.1e-28 130.6 170 47.1
FvH4_3g35940 Fragaria vesca HOM05D003527 ORTHO05D004099 1.4e-28 130.2 160 53.8
Sabra16G0144000 Salix brachista HOM05D003527 ORTHO05D004099 1.4e-28 130.2 163 49.1
FAN14G4675 Fragaria x ananassa HOM05D003527 ORTHO05D004099 3.1e-28 129.0 170 47.1
Psat7g236840 Pisum sativum HOM05D003527 ORTHO05D004099 3.1e-28 129.0 121 58.7
TWI79G0031 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 3.1e-28 129.0 160 50.0
VMungo1383G0208 Vigna mungo HOM05D003527 ORTHO05D004099 4.0e-28 128.6 116 60.3
FAN11G1093 Fragaria x ananassa HOM05D003527 ORTHO05D004099 5.2e-28 128.3 159 53.5
Gohir.A05G096000 Gossypium hirsutum HOM05D003527 ORTHO05D004099 5.2e-28 128.3 155 51.0
Sopen09g005410 Solanum pennellii HOM05D003527 ORTHO05D004099 5.2e-28 128.3 177 48.6
FAN16G0579 Fragaria x ananassa HOM05D003527 ORTHO05D004099 6.8e-28 127.9 164 51.2
Manes.09G089700 Manihot esculenta HOM05D003527 ORTHO05D004099 6.8e-28 127.9 162 51.2
Phvul.008G099800 Phaseolus vulgaris HOM05D003527 ORTHO05D004099 6.8e-28 127.9 105 63.8
Sabra09G0021000 Salix brachista HOM05D003527 ORTHO05D004099 6.8e-28 127.9 161 47.8
Glyma.08G358400 Glycine max HOM05D003527 ORTHO05D004099 1.2e-27 127.1 122 56.6
EL10Ac7g16007 Beta vulgaris HOM05D003527 ORTHO05D004099 1.5e-27 126.7 165 50.9
DCAR_014846 Daucus carota HOM05D006626 ORTHO05D007352 2.6e-27 125.9 123 56.1
MD11G1110500 Malus domestica HOM05D003527 ORTHO05D004099 2.6e-27 125.9 164 51.2
FAN21G2526 Fragaria x ananassa HOM05D003527 ORTHO05D004099 3.4e-27 125.6 164 51.2
Ah.08g219410 Amaranthus hybridus HOM05D003527 ORTHO05D004099 4.4e-27 125.2 165 50.9
Nn2g10383 Nelumbo nucifera HOM05D003527 ORTHO05D004099 4.4e-27 125.2 167 46.7
Dinv12411 Davidia involucrata HOM05D003527 ORTHO05D004099 5.8e-27 124.8 161 49.1
Eucgr.J02057 Eucalyptus grandis HOM05D003527 ORTHO05D004099 5.8e-27 124.8 160 51.2
Actinidia26460 Actinidia chinensis HOM05D003527 ORTHO05D004099 7.6e-27 124.4 154 50.0
CAN.G327.10 Capsicum annuum HOM05D003527 ORTHO05D004099 7.6e-27 124.4 171 46.2
DCAR_005975 Daucus carota HOM05D003527 ORTHO05D004099 9.9e-27 124.0 160 50.6
Solyc11g066010.2 Solanum lycopersicum HOM05D003527 ORTHO05D004099 1.3e-26 123.6 172 45.9
Sopen11g025750 Solanum pennellii HOM05D003527 ORTHO05D004099 1.3e-26 123.6 172 45.9
PGSC0003DMG400000395 Solanum tuberosum HOM05D003527 ORTHO05D004099 1.3e-26 123.6 172 45.9
Sabra06G0064100 Salix brachista HOM05D006626 ORTHO05D007352 1.7e-26 123.2 130 56.9
Aqoxy2G02103 Aquilegia oxysepala HOM05D003527 ORTHO05D004099 2.2e-26 122.9 160 49.4
Duzib093G1072 Durio zibethinus HOM05D003527 ORTHO05D004099 2.2e-26 122.9 156 50.6
Lalb_Chr03g0035091 Lupinus albus HOM05D003527 ORTHO05D004099 2.2e-26 122.9 117 56.4
TPR.G23255 Trifolium pratense HOM05D003527 ORTHO05D004099 6.4e-26 121.3 116 58.6
PSO384G3887 Papaver somniferum HOM05D003527 ORTHO05D004099 8.4e-26 120.9 166 47.6
RcHm_v2.0_Chr3g0466801 Rosa chinensis HOM05D003527 ORTHO05D004099 8.4e-26 120.9 169 46.2
MD04G1126900 Malus domestica HOM05D003527 ORTHO05D004099 1.4e-25 120.2 165 51.5
Psat0s4138g0040 Pisum sativum HOM05D003527 ORTHO05D004099 1.4e-25 120.2 121 57.9
AUR62001798 Chenopodium quinoa HOM05D003527 ORTHO05D004099 1.9e-25 119.8 165 49.7
Dinv16990 Davidia involucrata HOM05D003527 ORTHO05D004099 2.4e-25 119.4 164 46.3
Dinv42939 Davidia involucrata HOM05D003527 ORTHO05D004099 2.4e-25 119.4 164 46.3
Dinv43161 Davidia involucrata HOM05D003527 ORTHO05D004099 2.4e-25 119.4 164 46.3
MD03G1096000 Malus domestica HOM05D003527 ORTHO05D004099 4.2e-25 118.6 164 49.4
RcHm_v2.0_Chr5g0064221 Rosa chinensis HOM05D003527 ORTHO05D004099 5.4e-25 118.2 163 49.7
Peaxi162Scf00832g00018 Petunia axillaris HOM05D003527 ORTHO05D004099 7.1e-25 117.9 142 49.3
AUR62009585 Chenopodium quinoa HOM05D003527 ORTHO05D004099 9.3e-25 117.5 165 49.7
Actinidia23946 Actinidia chinensis HOM05D003527 ORTHO05D004099 3.5e-24 115.5 173 48.0
LjContig00564g0015687 Lotus japonicus HOM05D003527 ORTHO05D004099 3.5e-24 115.5 122 55.7
Nitab4.5_0005575g0040 Nicotiana tabacum HOM05D006626 ORTHO05D007352 4.6e-24 115.2 136 50.7
Nitab4.5_0007604g0010 Nicotiana tabacum HOM05D003527 ORTHO05D004099 7.8e-24 114.4 176 43.8
Nitab4.5_0001800g0180 Nicotiana tabacum HOM05D003527 ORTHO05D004099 1.0e-23 114.0 176 43.8
Oeu011402.1 Olea europaea HOM05D003527 ORTHO05D004099 1.0e-23 114.0 95 63.2
TAR623G1457 Trochodendron aralioides HOM05D003527 ORTHO05D004099 1.3e-23 113.6 93 64.5
Aqoxy4G02910 Aquilegia oxysepala HOM05D003527 ORTHO05D004099 1.7e-23 113.2 164 43.9
Phvul.010G013400 Phaseolus vulgaris HOM05D003527 ORTHO05D004099 2.3e-23 112.8 151 46.4
Hund04968 Selenicereus undatus HOM05D003527 ORTHO05D004099 2.3e-23 112.8 132 52.3
Gohir.A11G326600 Gossypium hirsutum HOM05D003527 ORTHO05D004099 3.0e-23 112.5 160 47.5
TPR.G5587 Trifolium pratense HOM05D003527 ORTHO05D004099 3.0e-23 112.5 123 52.8
Gohir.D11G345500 Gossypium hirsutum HOM05D003527 ORTHO05D004099 6.6e-23 111.3 160 47.5
CANSAT35G0216 Cannabis sativa HOM05D003527 ORTHO05D004099 1.1e-22 110.5 180 43.9
CSS0030599 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 1.9e-22 109.8 164 47.0
MBI05_g30238_MAGBIO Magnolia biondii HOM05D003527 ORTHO05D004099 1.9e-22 109.8 122 54.9
arahy.Tifrunner.gnm1.ann1.8UVC92 Arachis hypogaea HOM05D003527 ORTHO05D004099 2.5e-22 109.4 88 69.3
ClCG10G021090 Citrullus lanatus HOM05D003527 ORTHO05D004099 5.6e-22 108.2 127 52.8
Medtr7g059410 Medicago truncatula HOM05D003527 ORTHO05D004099 5.6e-22 108.2 92 59.8
Eucgr.K03143 Eucalyptus grandis HOM05D003527 ORTHO05D004099 7.3e-22 107.8 120 56.7
ECA236G2982 Erigeron canadensis HOM05D003527 ORTHO05D004099 9.6e-22 107.5 144 50.7
CiPaw.13G095400 Carya illinoinensis HOM05D003527 ORTHO05D004099 2.1e-21 106.3 171 43.9
MELO3C009262.2 Cucumis melo HOM05D003527 ORTHO05D004099 2.1e-21 106.3 126 50.8
CsaV3_3G034940 Cucumis sativus L. HOM05D003527 ORTHO05D004099 2.1e-21 106.3 122 52.5
Nitab4.5_0000761g0070 Nicotiana tabacum HOM05D006626 ORTHO05D007352 2.1e-21 106.3 135 50.4
PGR004G1376 Punica granatum HOM05D003527 ORTHO05D004099 2.8e-21 105.9 166 42.8
CSS0044295 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 8.1e-21 104.4 172 41.3
PSO339G4025 Papaver somniferum HOM05D003527 ORTHO05D004099 1.8e-20 103.2 104 55.8
Hund18916 Selenicereus undatus HOM05D003527 ORTHO05D004099 1.8e-20 103.2 172 43.0
Sed0011659 Sechium edule HOM05D003527 ORTHO05D004099 4.0e-20 102.1 127 51.2
Medtr4g021875 Medicago truncatula HOM05D003527 ORTHO05D004099 6.9e-20 101.3 156 46.8
Ca_26083_v3 Cicer arietinum L. HOM05D003527 ORTHO05D004099 2.0e-19 99.8 98 57.1
HanXRQChr05g0134511 Helianthus annuus HOM05D003527 ORTHO05D004099 2.6e-19 99.4 143 46.9
Duzib170G0558 Durio zibethinus HOM05D003527 ORTHO05D004099 3.4e-19 99.0 147 44.2
ECA247G3528 Erigeron canadensis HOM05D003527 ORTHO05D004099 4.4e-19 98.6 143 46.9
Lsat_1_v5_gn_9_23221 Lactuca sativa HOM05D003527 ORTHO05D004099 9.9e-19 97.4 135 45.2
Lsat_1_v5_gn_8_75920 Lactuca sativa HOM05D003527 ORTHO05D004099 1.7e-18 96.7 130 46.2
CiPaw.10G145200 Carya illinoinensis HOM05D003527 ORTHO05D004099 8.4e-18 94.4 126 50.8
Glyma.15G039000 Glycine max HOM05D003527 ORTHO05D004099 1.1e-17 94.0 122 50.0
COL.COLO4_18499 Corchorus olitorius HOM05D003527 ORTHO05D004099 3.2e-17 92.4 164 40.9
arahy.Tifrunner.gnm1.ann1.95G3UD Arachis hypogaea HOM05D003527 ORTHO05D004099 1.6e-16 90.1 133 46.6
Medtr2g096780 Medicago truncatula HOM05D003527 ORTHO05D004099 1.0e-15 87.4 132 44.7
THA.LOC104816278 Tarenaya hassleriana HOM05D003527 ORTHO05D004099 3.9e-15 85.5 94 55.3
VMungo1080G1739 Vigna mungo HOM05D003527 ORTHO05D004099 3.9e-15 85.5 158 40.5
arahy.Tifrunner.gnm1.ann1.QWF1SC Arachis hypogaea HOM05D003527 ORTHO05D004099 6.6e-15 84.7 133 45.1
Carub.0006s0124 Capsella rubella HOM05D003527 ORTHO05D004099 3.3e-14 82.4 110 46.4
MELO3C003124.2 Cucumis melo HOM05D003527 ORTHO05D004099 4.3e-14 82.0 92 52.2
CsaV3_4G024920 Cucumis sativus L. HOM05D003527 ORTHO05D004099 4.3e-14 82.0 102 50.0
ATR0680G191 Amborella trichopoda HOM05D003527 ORTHO05D004099 9.6e-14 80.9 121 41.3
HanXRQChr08g0234711 Helianthus annuus HOM05D003527 ORTHO05D004099 9.6e-14 80.9 145 42.1
MBI14_g37823_MAGBIO Magnolia biondii HOM05D003527 ORTHO05D004099 9.6e-14 80.9 93 51.6
Rhsim13G0083400 Rhododendron simsii HOM05D003527 ORTHO05D004099 9.6e-14 80.9 178 37.1
AL6G11680 Arabidopsis lyrata HOM05D003527 ORTHO05D004099 2.1e-13 79.7 105 47.6
ClCG04G008250 Citrullus lanatus HOM05D003527 ORTHO05D004099 2.8e-13 79.3 102 47.1
AT5G02440 Arabidopsis thaliana HOM05D003527 ORTHO05D004099 3.6e-13 79.0 106 49.1
Thhalv10014850m.g Eutrema salsugineum HOM05D003527 ORTHO05D004099 3.6e-13 79.0 110 47.3
Prupe.6G253600 Prunus persica HOM05D003527 ORTHO05D004099 6.2e-13 78.2 168 41.1
CARHR210970 Cardamine hirsuta HOM05D003527 ORTHO05D004099 8.1e-13 77.8 103 46.6
BolC2t06046H Brassica oleracea HOM05D003527 ORTHO05D004099 1.8e-12 76.6 109 44.0
TPR.G34322 Trifolium pratense HOM05D003527 ORTHO05D004099 1.8e-12 76.6 131 40.5
C02p00460 Brassica napus HOM05D003527 ORTHO05D004099 4.0e-12 75.5 104 45.2
arahy.Tifrunner.gnm1.ann1.0C4VVF Arachis hypogaea HOM05D003527 ORTHO05D004099 4.5e-11 72.0 172 37.2
ATR0559G115 Amborella trichopoda HOM05D003527 ORTHO05D004099 5.8e-11 71.6 126 38.9
CDE02G3270 Ceratophyllum demersum HOM05D003527 ORTHO05D004099 2.4e-09 66.2 126 34.1
PSO339G2088 Papaver somniferum HOM05D003527 ORTHO05D004099 3.2e-09 65.9 166 34.3
arahy.Tifrunner.gnm1.ann1.QZ6FSS Arachis hypogaea HOM05D003527 ORTHO05D004099 5.5e-09 65.1 167 36.5
Actinidia08370 Actinidia chinensis HOM05D003527 ORTHO05D004099 7.1e-09 64.7 115 45.2
CDE08G1604 Ceratophyllum demersum HOM05D003527 ORTHO05D004099 2.1e-08 63.2 127 35.4
PSO151G0026 Papaver somniferum HOM05D003527 ORTHO05D004099 2.1e-08 63.2 124 39.5
PGR102G2755 Punica granatum HOM05D003527 ORTHO05D004099 2.7e-08 62.8 149 34.9
Sed0028236 Sechium edule HOM05D003527 ORTHO05D004099 6.0e-08 61.6 92 42.4
Glyma.13G335402 Glycine max HOM05D003527 ORTHO05D004099 3.9e-07 58.9 69 47.8
SEGI_38129 Sequoiadendron giganteum HOM05D003527 ORTHO05D004099 8.7e-07 57.8 134 35.8
Lalb_Chr13g0291181 Lupinus albus HOM05D003527 ORTHO05D004099 1.9e-06 56.6 80 46.2
THA.LOC104825595 Tarenaya hassleriana HOM05D006794 ORTHO05D008322 9.6e-06 54.3 145 33.8


User provided reference genes

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