Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold126G33759 Striga asiatica HOM05D005320 ORTHO05D007922 7.6e-126 453.8 215 100.0
MSTRG.19072 Avicennia marina HOM05D005320 ORTHO05D007922 1.4e-116 422.9 215 92.1
Migut.J00304 Erythranthe guttata HOM05D005320 ORTHO05D007922 1.9e-116 422.5 215 91.2
Nitab4.5_0000770g0150 Nicotiana tabacum HOM05D005320 ORTHO05D007922 2.3e-114 415.6 216 91.2
PGR031G0341 Punica granatum HOM05D005320 ORTHO05D007922 6.7e-114 414.1 215 89.8
Cc06_g02320 Coffea canephora HOM05D005320 ORTHO05D007922 7.4e-113 410.6 215 88.4
CAN.G324.16 Capsicum annuum HOM05D005320 ORTHO05D007922 1.6e-112 409.5 216 90.3
Gohir.A04G083900 Gossypium hirsutum HOM05D005320 ORTHO05D007922 1.1e-111 406.8 215 87.9
unitig_21.g21010 Utricularia gibba HOM05D005320 ORTHO05D007922 1.1e-111 406.8 215 87.4
Actinidia05326 Actinidia chinensis HOM05D005320 ORTHO05D007922 5.3e-111 404.4 215 87.9
Gohir.D04G122700 Gossypium hirsutum HOM05D005320 ORTHO05D007922 5.3e-111 404.4 215 87.4
MD04G1133400 Malus domestica HOM05D005320 ORTHO05D007922 5.3e-111 404.4 215 87.4
arahy.Tifrunner.gnm1.ann1.AE34S8 Arachis hypogaea HOM05D005320 ORTHO05D007922 1.2e-110 403.3 216 87.0
arahy.Tifrunner.gnm1.ann1.SHW8SI Arachis hypogaea HOM05D005320 ORTHO05D007922 1.2e-110 403.3 216 87.0
Solyc10g084850.2 Solanum lycopersicum HOM05D005320 ORTHO05D007922 1.2e-110 403.3 216 88.9
PGSC0003DMG400011070 Solanum tuberosum HOM05D005320 ORTHO05D007922 1.2e-110 403.3 216 88.9
Thecc.05G035400 Theobroma cacao HOM05D005320 ORTHO05D007922 1.2e-110 403.3 216 88.4
GSVIVG01034127001 Vitis vinifera HOM05D005320 ORTHO05D007922 2.6e-110 402.1 215 87.0
PSO339G2759 Papaver somniferum HOM05D005320 ORTHO05D007922 3.4e-110 401.7 215 86.5
Sopen10g034290 Solanum pennellii HOM05D005320 ORTHO05D007922 4.5e-110 401.4 216 88.4
Gorai.012G105600 Gossypium raimondii HOM05D005320 ORTHO05D007922 5.9e-110 401.0 219 86.3
CiPaw.09G195900 Carya illinoinensis HOM05D005320 ORTHO05D007922 7.6e-110 400.6 215 87.4
Manes.09G092200 Manihot esculenta HOM05D005320 ORTHO05D007922 7.6e-110 400.6 215 87.0
CANSAT35G1431 Cannabis sativa HOM05D005320 ORTHO05D007922 1.0e-109 400.2 216 87.0
Nn2g11189 Nelumbo nucifera HOM05D005320 ORTHO05D007922 1.0e-109 400.2 215 86.5
QL07p030104 Quercus lobata HOM05D005320 ORTHO05D007922 1.0e-109 400.2 214 87.4
QL07p030908 Quercus lobata HOM05D005320 ORTHO05D007922 1.0e-109 400.2 214 87.4
MD12G1146200 Malus domestica HOM05D005320 ORTHO05D007922 1.3e-109 399.8 215 87.0
PSO063G2683 Papaver somniferum HOM05D005320 ORTHO05D007922 1.3e-109 399.8 215 86.0
Sc07g0007050 Simmondsia chinensis HOM05D005320 ORTHO05D007922 2.2e-109 399.1 213 86.9
Dinv35573 Davidia involucrata HOM05D005320 ORTHO05D007922 2.9e-109 398.7 215 86.5
Prupe.6G259400 Prunus persica HOM05D005320 ORTHO05D007922 5.0e-109 397.9 215 86.0
Ca_20076_v3 Cicer arietinum L. HOM05D005320 ORTHO05D007922 6.5e-109 397.5 217 85.7
Ciclev10012735m.g Citrus clementina HOM05D005320 ORTHO05D007922 1.1e-108 396.7 215 85.6
COL.COLO4_14757 Corchorus olitorius HOM05D005320 ORTHO05D007922 1.4e-108 396.4 215 87.4
Hma1.2p1_1082F.1_g255150 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 1.4e-108 396.4 216 86.1
Lalb_Chr01g0013501 Lupinus albus HOM05D005320 ORTHO05D007922 1.4e-108 396.4 215 85.6
Glyma.03G068800 Glycine max HOM05D005320 ORTHO05D007922 2.5e-108 395.6 217 84.8
Rhsim05G0195000 Rhododendron simsii HOM05D005320 ORTHO05D007922 3.2e-108 395.2 215 86.0
Glyma.01G100200 Glycine max HOM05D005320 ORTHO05D007922 4.2e-108 394.8 217 84.8
CSS0049441 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 7.2e-108 394.0 219 85.4
Lsat_1_v5_gn_5_153940 Lactuca sativa HOM05D005320 ORTHO05D007922 7.2e-108 394.0 215 85.1
Aqoxy1G00876 Aquilegia oxysepala HOM05D005320 ORTHO05D007922 9.3e-108 393.7 218 84.9
Medtr4g020460 Medicago truncatula HOM05D005320 ORTHO05D007922 2.1e-107 392.5 217 84.8
TWI74G0393 Tripterygium wilfordii HOM05D005320 ORTHO05D007922 3.5e-107 391.7 215 85.6
HanXRQChr13g0406901 Helianthus annuus HOM05D005320 ORTHO05D007922 1.0e-106 390.2 215 84.2
TPR.G17890 Trifolium pratense HOM05D005320 ORTHO05D007922 1.3e-106 389.8 217 84.3
Dinv37147 Davidia involucrata HOM05D005320 ORTHO05D007922 3.0e-106 388.7 237 78.5
MBI05_g35634_MAGBIO Magnolia biondii HOM05D005320 ORTHO05D007922 3.9e-106 388.3 216 83.8
VMungo0331G1509 Vigna mungo HOM05D005320 ORTHO05D007922 6.7e-106 387.5 210 84.8
ClCG04G008030 Citrullus lanatus HOM05D005320 ORTHO05D007922 1.5e-105 386.3 215 84.7
Atru.chr8.2015 Acer truncatum HOM05D005320 ORTHO05D007922 3.3e-105 385.2 216 83.8
ECA248G2752 Erigeron canadensis HOM05D005320 ORTHO05D007922 3.3e-105 385.2 216 83.8
Psat7g239840 Pisum sativum HOM05D005320 ORTHO05D007922 4.3e-105 384.8 217 82.5
CDE06G1896 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 7.4e-105 384.0 215 83.3
Lj3g0008944 Lotus japonicus HOM05D005320 ORTHO05D007922 9.7e-105 383.6 216 83.8
RcHm_v2.0_Chr3g0466041 Rosa chinensis HOM05D005320 ORTHO05D007922 9.7e-105 383.6 216 84.7
vmacro20179 Vaccinium macrocarpon HOM05D005320 ORTHO05D007922 9.7e-105 383.6 231 79.2
CsaV3_4G025180 Cucumis sativus L. HOM05D005320 ORTHO05D007922 2.8e-104 382.1 215 83.7
FvH4_6g13220 Fragaria vesca HOM05D005320 ORTHO05D007922 2.8e-104 382.1 216 84.3
Lj3A964T54 Lonicera japonica HOM05D005320 ORTHO05D007922 2.8e-104 382.1 248 74.6
CDE07G0950 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 6.3e-104 380.9 215 81.4
FAN02G2927 Fragaria x ananassa HOM05D005320 ORTHO05D007922 8.2e-104 380.6 216 83.8
Potri.016G100600 Populus trichocarpa HOM05D005320 ORTHO05D007922 1.8e-103 379.4 225 80.9
Peaxi162Scf00094g00911 Petunia axillaris HOM05D005320 ORTHO05D007922 4.1e-103 378.3 186 93.0
Sp4g20060 Schrenkiella parvula HOM05D005320 ORTHO05D007922 2.6e-102 375.6 216 80.1
THA.LOC104823414 Tarenaya hassleriana HOM05D005320 ORTHO05D007922 4.5e-102 374.8 216 80.6
AL4G34610 Arabidopsis lyrata HOM05D005320 ORTHO05D007922 5.9e-102 374.4 216 79.6
AT2G37680 Arabidopsis thaliana HOM05D005320 ORTHO05D007922 5.9e-102 374.4 216 79.6
CARHR131860 Cardamine hirsuta HOM05D005320 ORTHO05D007922 5.9e-102 374.4 216 79.6
Thhalv10017226m.g Eutrema salsugineum HOM05D005320 ORTHO05D007922 7.7e-102 374.0 216 79.6
BcaB06g29019 Brassica carinata HOM05D005320 ORTHO05D007922 1.7e-101 372.9 216 79.6
Eucgr.K01475 Eucalyptus grandis HOM05D005320 ORTHO05D007922 2.2e-101 372.5 241 75.9
TAR623G0888 Trochodendron aralioides HOM05D005320 ORTHO05D007922 5.0e-101 371.3 200 84.5
BraA04t18363Z Brassica rapa HOM05D005320 ORTHO05D007922 6.5e-101 370.9 216 79.2
FAN14G1919 Fragaria x ananassa HOM05D005320 ORTHO05D007922 1.4e-100 369.8 200 86.0
Oeu007799.1 Olea europaea HOM05D005320 ORTHO05D007922 1.9e-100 369.4 186 91.4
BcaC02g07499 Brassica carinata HOM05D005320 ORTHO05D007922 3.2e-100 368.6 216 79.2
Sed0022090 Sechium edule HOM05D005320 ORTHO05D007922 3.2e-100 368.6 215 81.9
Nitab4.5_0005100g0070 Nicotiana tabacum HOM05D005320 ORTHO05D007922 5.5e-100 367.9 190 91.1
Carub.0004s1963 Capsella rubella HOM05D005320 ORTHO05D007922 1.2e-99 366.7 216 78.2
DCAR_012114 Daucus carota HOM05D005320 ORTHO05D007922 7.9e-99 364.0 220 79.5
Aa31sc70G70 Aethionema arabicum HOM05D005320 ORTHO05D007922 4.3e-97 358.2 217 77.0
Duzib128G0467 Durio zibethinus HOM05D005320 ORTHO05D007922 7.4e-97 357.5 188 88.3
CSS0000536 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 1.3e-96 356.7 196 84.7
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 2.2e-96 355.9 190 87.4
AUR62043523 Chenopodium quinoa HOM05D005320 ORTHO05D007922 2.2e-96 355.9 180 89.4
Phvul.010G015600 Phaseolus vulgaris HOM05D005320 ORTHO05D007922 3.7e-96 355.1 188 85.6
FAN05G0090 Fragaria x ananassa HOM05D005320 ORTHO05D007922 4.8e-96 354.8 190 86.3
RcHm_v2.0_Chr3g0466001 Rosa chinensis HOM05D005320 ORTHO05D007922 6.3e-96 354.4 198 84.8
AUR62042382 Chenopodium quinoa HOM05D005320 ORTHO05D007922 1.1e-95 353.6 178 89.3
HPP92_026786 Vanilla planifolia HOM05D005320 ORTHO05D007922 1.4e-95 353.2 198 81.3
Os03g0679000 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 2.4e-95 352.4 219 73.5
BolC4t28116H Brassica oleracea HOM05D005320 ORTHO05D007922 4.1e-95 351.7 203 78.8
Duzib093G0721 Durio zibethinus HOM05D005320 ORTHO05D007922 3.4e-94 348.6 189 87.3
A04p28870 Brassica napus HOM05D005320 ORTHO05D007922 7.7e-94 347.4 203 78.3
Os01g0144200 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 1.0e-93 347.1 219 72.6
C04p66130 Brassica napus HOM05D005320 ORTHO05D007922 2.2e-93 345.9 203 78.3
ATR0559G120 Amborella trichopoda HOM05D005320 ORTHO05D007922 6.1e-91 337.8 207 77.3
Mapoly0038s0068 Marchantia polymorpha HOM05D005320 ORTHO05D007922 2.2e-88 329.3 196 74.5
Zm00001eb124510 Zea mays HOM05D005320 ORTHO05D007922 7.7e-86 320.9 192 76.6
Pp3c6_13830 Physcomitrium patens HOM05D005320 ORTHO05D007922 3.2e-84 315.5 215 67.0
SMO356G0269 Selaginella moellendorffii HOM05D005320 ORTHO05D007922 4.2e-84 315.1 196 69.9
AagrBONN_evm.TU.Sc2ySwM_117.2668 Anthoceros agrestis HOM05D005320 ORTHO05D007922 4.0e-82 308.5 196 69.9
CBR_g30417 Chara braunii HOM05D005320 ORTHO05D007922 2.7e-75 285.8 199 65.3
Hma1.2p1_0936F.1_g239015 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 6.1e-75 284.6 172 78.5
Hma1.2p1_1082F.1_g255160 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 6.1e-75 284.6 172 78.5
Cpa.g.c45575 Carica papaya HOM05D005320 ORTHO05D007922 3.0e-74 282.3 145 87.6
Zm00001eb335820 Zea mays HOM05D005320 ORTHO05D007922 3.7e-72 275.4 145 84.1
EL10As1g23111 Beta vulgaris HOM05D005320 ORTHO05D007922 7.7e-70 267.7 133 90.2
RcHm_v2.0_Chr3g0465971 Rosa chinensis HOM05D005320 ORTHO05D007922 8.0e-67 257.7 133 88.7
Sabra16G0101600 Salix brachista HOM05D005320 ORTHO05D007922 2.3e-66 256.1 133 86.5
HPP92_000741 Vanilla planifolia HOM05D005320 ORTHO05D007922 3.8e-61 238.8 130 81.5
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 2.1e-59 233.0 122 84.4
RcHm_v2.0_Chr3g0465901 Rosa chinensis HOM05D005320 ORTHO05D007922 2.2e-56 223.0 158 69.6
Hma1.2p1_1082F.1_g255140 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 2.4e-55 219.5 125 80.8
Hma1.2p1_0766F.1_g215380 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 2.0e-46 189.9 106 84.0
HPP92_000739 Vanilla planifolia HOM05D005320 ORTHO05D007922 9.8e-41 171.0 93 86.0
RcHm_v2.0_Chr3g0465921 Rosa chinensis HOM05D005320 ORTHO05D007922 3.7e-40 169.1 89 87.6
EL10As1g23112 Beta vulgaris HOM05D005320 ORTHO05D007922 8.9e-34 147.9 86 81.4
Haze_20831 Corylus avellana HOM05D000026 ORTHO05D000094 2.2e-32 143.3 82 81.7
Cre17.g744497 Chlamydomonas reinhardtii HOM05D005320 ORTHO05D007922 2.4e-26 123.2 204 35.3
Mapoly0050s0129 Marchantia polymorpha HOM05D005320 ORTHO05D007922 8.4e-24 114.8 209 34.4
RcHm_v2.0_Chr7g0189661 Rosa chinensis HOM05D005320 ORTHO05D007922 3.2e-15 86.3 61 68.9
MELO3C003145.2 Cucumis melo HOM05D000231 ORTHO05D000132 1.6e-14 84.0 40 92.5
RcHm_v2.0_Chr4g0436891 Rosa chinensis HOM05D005320 ORTHO05D007922 9.6e-12 74.7 64 59.4
Pp3c27_5960 Physcomitrium patens HOM05D005320 ORTHO05D007922 6.9e-10 68.6 43 67.4


User provided reference genes

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