Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold124G33641 Striga asiatica HOM05D005863 ORTHO05D003355 4.7e-256 887.9 637 100.0
SGA_v2.0_scaffold140G35473 Striga asiatica HOM05D005863 ORTHO05D003355 3.4e-41 174.1 169 59.8
MSTRG.7960 Avicennia marina HOM05D005863 ORTHO05D003355 5.3e-26 123.6 109 55.0
SalBow2G2700 Salvia bowleyana HOM05D005863 ORTHO05D003355 2.7e-25 121.3 125 48.0
MSTRG.544 Avicennia marina HOM05D005863 ORTHO05D003355 7.2e-23 113.2 109 53.2
COL.COLO4_23547 Corchorus olitorius HOM05D005863 ORTHO05D003355 2.1e-22 111.7 101 51.5
Dinv14763 Davidia involucrata HOM05D005863 ORTHO05D003355 4.0e-21 107.5 105 51.4
Thecc.02G268600 Theobroma cacao HOM05D005863 ORTHO05D003355 4.0e-21 107.5 93 54.8
Duzib251G0242 Durio zibethinus HOM05D005863 ORTHO05D003355 5.2e-21 107.1 98 52.0
Duzib268G1590 Durio zibethinus HOM05D005863 ORTHO05D003355 8.8e-21 106.3 103 49.5
Peaxi162Scf00128g00645 Petunia axillaris HOM05D012928 ORTHO05D003355 1.2e-20 105.9 89 55.1
Gorai.005G174200 Gossypium raimondii HOM05D005863 ORTHO05D003355 3.4e-20 104.4 103 48.5
PGSC0003DMG400010741 Solanum tuberosum HOM05D012928 ORTHO05D003355 3.4e-20 104.4 102 50.0
Migut.K00651 Erythranthe guttata HOM05D005863 ORTHO05D003355 5.7e-20 103.6 106 49.1
Lj6A818T39 Lonicera japonica HOM05D005863 ORTHO05D003355 7.5e-20 103.2 141 42.6
Solyc05g014130.3 Solanum lycopersicum HOM05D012928 ORTHO05D003355 7.5e-20 103.2 104 48.1
Gohir.A03G131400 Gossypium hirsutum HOM05D005863 ORTHO05D003355 9.8e-20 102.8 103 47.6
Ciclev10030561m.g Citrus clementina HOM05D005863 ORTHO05D003355 1.3e-19 102.4 92 51.1
Sopen05g009140 Solanum pennellii HOM05D012928 ORTHO05D003355 1.3e-19 102.4 88 52.3
Nitab4.5_0007393g0020 Nicotiana tabacum HOM05D012928 ORTHO05D003355 1.7e-19 102.1 118 48.3
Psat5g094240 Pisum sativum HOM05D013281 ORTHO05D003355 2.8e-19 101.3 88 51.1
Nitab4.5_0000041g0190 Nicotiana tabacum HOM05D012928 ORTHO05D003355 4.8e-19 100.5 86 55.8
HanXRQChr01g0023571 Helianthus annuus HOM05D005863 ORTHO05D003355 6.3e-19 100.1 87 55.2
Manes.12G018600 Manihot esculenta HOM05D005863 ORTHO05D003355 6.3e-19 100.1 89 50.6
Aqoxy3G01339 Aquilegia oxysepala HOM05D005863 ORTHO05D003355 1.1e-18 99.4 85 50.6
Lsat_1_v5_gn_8_150460 Lactuca sativa HOM05D005863 ORTHO05D003355 1.1e-18 99.4 89 52.8
Potri.010G052200 Populus trichocarpa HOM05D005863 ORTHO05D003355 1.4e-18 99.0 106 46.2
PGR102G1092 Punica granatum HOM05D005863 ORTHO05D003355 2.4e-18 98.2 94 48.9
CiPaw.11G070600 Carya illinoinensis HOM05D005863 ORTHO05D003355 3.1e-18 97.8 86 51.2
Haze_12305 Corylus avellana HOM05D005863 ORTHO05D003355 3.1e-18 97.8 109 45.9
Nitab4.5_0011762g0010 Nicotiana tabacum HOM05D012928 ORTHO05D003355 3.1e-18 97.8 103 44.7
Cpa.g.sc369.6 Carica papaya HOM05D005863 ORTHO05D003355 4.1e-18 97.4 89 51.7
GSVIVG01000596001 Vitis vinifera HOM05D005863 ORTHO05D003355 4.1e-18 97.4 100 46.0
PGR031G1574 Punica granatum HOM05D005863 ORTHO05D003355 5.4e-18 97.1 117 43.6
Sabra10G0018100 Salix brachista HOM05D005863 ORTHO05D003355 7.0e-18 96.7 88 52.3
HanXRQChr08g0208041 Helianthus annuus HOM05D005863 ORTHO05D003355 9.1e-18 96.3 194 33.5
Manes.13G019100 Manihot esculenta HOM05D005863 ORTHO05D003355 1.2e-17 95.9 89 49.4
QL03p055923 Quercus lobata HOM05D005863 ORTHO05D003355 1.6e-17 95.5 93 48.4
Rhsim12G0037600 Rhododendron simsii HOM05D005863 ORTHO05D003355 1.6e-17 95.5 91 50.5
Glyma.18G011700 Glycine max HOM05D013281 ORTHO05D003355 2.0e-17 95.1 94 47.9
vmacro01106 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 3.5e-17 94.4 90 50.0
Nn4g22491 Nelumbo nucifera HOM05D005863 ORTHO05D003355 5.9e-17 93.6 91 47.3
Glyma.11G245500 Glycine max HOM05D013281 ORTHO05D003355 1.0e-16 92.8 96 45.8
TAR629G1344 Trochodendron aralioides HOM05D005863 ORTHO05D003355 1.0e-16 92.8 98 45.9
DCAR_024069 Daucus carota HOM05D005863 ORTHO05D003355 1.7e-16 92.0 84 47.6
Sc14g0008880 Simmondsia chinensis HOM05D005863 ORTHO05D003355 1.7e-16 92.0 157 38.9
CARHR215860 Cardamine hirsuta HOM05D008497 ORTHO05D003355 2.9e-16 91.3 157 34.4
Medtr3g086220 Medicago truncatula HOM05D013281 ORTHO05D003355 2.9e-16 91.3 83 51.8
Cc11_g16250 Coffea canephora HOM05D012928 ORTHO05D003355 3.8e-16 90.9 105 46.7
BcaB07g31396 Brassica carinata HOM05D008497 ORTHO05D003355 5.0e-16 90.5 103 48.5
AL7G45710 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 6.5e-16 90.1 132 37.9
Carub.0007s3238 Capsella rubella HOM05D008497 ORTHO05D003355 6.5e-16 90.1 114 39.5
Sp7g05260 Schrenkiella parvula HOM05D008497 ORTHO05D003355 6.5e-16 90.1 209 32.5
Phvul.001G257200 Phaseolus vulgaris HOM05D013281 ORTHO05D003355 8.5e-16 89.7 94 46.8
THA.LOC104807749 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 1.1e-15 89.4 88 44.3
Atru.chr11.2201 Acer truncatum HOM05D005863 ORTHO05D003355 1.5e-15 89.0 97 46.4
MELO3C010709.2 Cucumis melo HOM05D005863 ORTHO05D003355 1.9e-15 88.6 89 48.3
ClCG08G017500 Citrullus lanatus HOM05D005863 ORTHO05D003355 4.2e-15 87.4 89 47.2
Sed0006554 Sechium edule HOM05D005863 ORTHO05D003355 4.2e-15 87.4 96 44.8
TWI36G0003 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 4.2e-15 87.4 97 42.3
CANSAT01G3281 Cannabis sativa HOM05D005863 ORTHO05D003355 5.5e-15 87.0 94 47.9
AT5G37190 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 7.2e-15 86.7 157 33.1
CsaV3_2G025110 Cucumis sativus L. HOM05D005863 ORTHO05D003355 7.2e-15 86.7 90 46.7
Lalb_Chr23g0277781 Lupinus albus HOM05D013281 ORTHO05D003355 7.2e-15 86.7 83 47.0
PSO017G4976 Papaver somniferum HOM05D040514 ORTHO05D003355 7.2e-15 86.7 92 43.5
Sp2g01280 Schrenkiella parvula HOM05D008497 ORTHO05D027096 1.6e-14 85.5 161 34.8
AT4G00930 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 2.1e-14 85.1 194 29.4
Lalb_Chr11g0075601 Lupinus albus HOM05D005863 ORTHO05D003355 2.7e-14 84.7 83 45.8
THA.LOC104825539 Tarenaya hassleriana HOM05D005863 ORTHO05D003355 2.7e-14 84.7 88 42.0
Lj4g0027725 Lotus japonicus HOM05D013281 ORTHO05D003355 6.1e-14 83.6 94 44.7
Prupe.1G239400 Prunus persica HOM05D005863 ORTHO05D017031 8.0e-14 83.2 103 40.8
TPR.G14234 Trifolium pratense HOM05D013281 ORTHO05D003355 1.0e-13 82.8 88 43.2
Thhalv10023229m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 3.0e-13 81.3 114 36.0
Sed0020016 Sechium edule HOM05D005863 ORTHO05D003355 3.0e-13 81.3 83 48.2
BcaC04g22481 Brassica carinata HOM05D008497 ORTHO05D003355 5.2e-13 80.5 238 31.9
C09p18810 Brassica napus HOM05D008497 ORTHO05D003355 5.2e-13 80.5 240 30.4
VMungo1383G2020 Vigna mungo HOM05D013281 ORTHO05D003355 5.2e-13 80.5 93 44.1
BolC9t54783H Brassica oleracea HOM05D008497 ORTHO05D003355 3.4e-12 77.8 239 31.4
Sp7g04810 Schrenkiella parvula HOM05D008497 ORTHO05D003355 5.7e-12 77.0 86 44.2
Aa31sc26G130 Aethionema arabicum HOM05D008497 ORTHO05D003355 7.5e-12 76.6 98 38.8
EL10As2g23204 Beta vulgaris HOM05D025851 ORTHO05D003355 9.8e-12 76.3 87 44.8
ATR0824G200 Amborella trichopoda HOM05D005863 ORTHO05D003355 1.7e-11 75.5 105 33.3
A09p15560 Brassica napus HOM05D008497 ORTHO05D003355 2.8e-11 74.7 240 29.2
BraA09t37196Z Brassica rapa HOM05D008497 ORTHO05D003355 2.8e-11 74.7 240 29.2
BolC4t24461H Brassica oleracea HOM05D008497 ORTHO05D003355 3.7e-11 74.3 86 41.9
Ah.03g133620 Amaranthus hybridus HOM05D001489 ORTHO05D001380 4.9e-11 73.9 89 38.2
BcaC02g10405 Brassica carinata HOM05D008497 ORTHO05D003355 1.4e-10 72.4 82 42.7
C04p29310 Brassica napus HOM05D008497 ORTHO05D003355 1.4e-10 72.4 82 42.7
CAN.G650.29 Capsicum annuum HOM05D012928 ORTHO05D003355 1.8e-10 72.0 198 29.3
BraA01t02635Z Brassica rapa HOM05D008497 ORTHO05D003355 2.4e-10 71.6 185 30.3
Potri.007G102500 Populus trichocarpa HOM05D005863 ORTHO05D003355 2.4e-10 71.6 89 36.0
arahy.Tifrunner.gnm1.ann1.R3FSDD Arachis hypogaea HOM05D015529 ORTHO05D015409 3.1e-10 71.2 132 31.8
AUR62024201 Chenopodium quinoa HOM05D025851 ORTHO05D044019 3.1e-10 71.2 94 36.2
ATR0751G078 Amborella trichopoda HOM05D005863 ORTHO05D003355 4.1e-10 70.9 81 37.0
Sabra07G0084200 Salix brachista HOM05D005863 ORTHO05D003355 5.4e-10 70.5 84 38.1
Aa31LG7G9560 Aethionema arabicum HOM05D008497 ORTHO05D003355 7.0e-10 70.1 139 30.2
BcaC06g36075 Brassica carinata HOM05D008497 ORTHO05D003355 9.2e-10 69.7 184 30.4
C07p08170 Brassica napus HOM05D008497 ORTHO05D003355 9.2e-10 69.7 184 30.4
BolC7t41233H Brassica oleracea HOM05D008497 ORTHO05D003355 9.2e-10 69.7 184 30.4
Carub.0003s3440 Capsella rubella HOM05D008497 ORTHO05D003355 9.2e-10 69.7 129 33.3
PSO384G2180 Papaver somniferum HOM05D005863 ORTHO05D003355 9.2e-10 69.7 164 29.9
Actinidia30696 Actinidia chinensis HOM05D005863 ORTHO05D003355 1.2e-09 69.3 90 42.2
RcHm_v2.0_Chr4g0432241 Rosa chinensis HOM05D005863 ORTHO05D017031 1.2e-09 69.3 83 45.8
AT4G00920 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.6e-09 68.9 197 31.0
CANSAT78G1634 Cannabis sativa HOM05D005863 ORTHO05D003355 2.7e-09 68.2 127 30.7
FAN12G0897 Fragaria x ananassa HOM05D005863 ORTHO05D017031 4.5e-09 67.4 91 41.8
MD13G1106900 Malus domestica HOM05D005863 ORTHO05D017031 4.5e-09 67.4 82 46.3
TAR629G0397 Trochodendron aralioides HOM05D005863 ORTHO05D003355 4.5e-09 67.4 81 38.3
Ca_25120_v3 Cicer arietinum L. HOM05D013281 ORTHO05D015409 7.7e-09 66.6 88 38.6
THA.LOC104825538 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 7.7e-09 66.6 72 43.1
Atru.chr2.3697 Acer truncatum HOM05D005863 ORTHO05D003355 1.0e-08 66.2 169 27.8
RcHm_v2.0_Chr3g0496661 Rosa chinensis HOM05D014719 ORTHO05D003355 1.0e-08 66.2 93 36.6
MD16G1107000 Malus domestica HOM05D005863 ORTHO05D017031 1.7e-08 65.5 214 31.3
GSVIVG01014696001 Vitis vinifera HOM05D005863 ORTHO05D003355 1.7e-08 65.5 85 35.3
FvH4_4g25060 Fragaria vesca HOM05D005863 ORTHO05D017031 2.3e-08 65.1 91 41.8
FAN22G1084 Fragaria x ananassa HOM05D005863 ORTHO05D017031 2.3e-08 65.1 91 41.8
FAN22G1483 Fragaria x ananassa HOM05D005863 ORTHO05D017031 2.3e-08 65.1 91 41.8
AL1G64360 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 2.9e-08 64.7 153 29.4
FAN07G0148 Fragaria x ananassa HOM05D005863 ORTHO05D017031 2.9e-08 64.7 91 41.8
Thecc.07G012300 Theobroma cacao HOM05D005863 ORTHO05D003355 2.9e-08 64.7 91 37.4
HanXRQChr11g0334111 Helianthus annuus HOM05D005863 ORTHO05D003355 5.0e-08 63.9 124 29.0
AT2G02770 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 6.6e-08 63.5 79 40.5
CiPaw.12G138700 Carya illinoinensis HOM05D014719 ORTHO05D003355 6.6e-08 63.5 84 38.1
FAN17G1935 Fragaria x ananassa HOM05D005863 ORTHO05D017031 8.6e-08 63.2 91 40.7
Ah.02g130420 Amaranthus hybridus HOM05D025851 ORTHO05D003355 1.1e-07 62.8 190 28.9
AT2G01800 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.1e-07 62.8 130 29.2
PSO339G2613 Papaver somniferum HOM05D005863 ORTHO05D003355 1.1e-07 62.8 81 32.1
PSO339G3984 Papaver somniferum HOM05D005863 ORTHO05D003355 1.1e-07 62.8 93 36.6
THA.LOC104822728 Tarenaya hassleriana HOM05D012516 ORTHO05D003355 1.1e-07 62.8 112 31.2
Zm00001eb079300 Zea mays HOM05D028546 ORTHO05D030325 1.1e-07 62.8 92 31.5
Prupe.8G267500 Prunus persica HOM05D014719 ORTHO05D003355 1.5e-07 62.4 106 34.9
AT1G30060 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.9e-07 62.0 140 27.9
Ciclev10008896m.g Citrus clementina HOM05D005863 ORTHO05D003355 1.9e-07 62.0 90 33.3
Hma1.2p1_2829F.1_g329210 Hydrangea macrophylla HOM05D005863 ORTHO05D003355 2.5e-07 61.6 102 31.4
PSO384G3490 Papaver somniferum HOM05D005863 ORTHO05D003355 2.5e-07 61.6 82 31.7
EL10Ac4g07554 Beta vulgaris HOM05D038882 ORTHO05D003355 3.3e-07 61.2 116 29.3
Gohir.A13G132200 Gossypium hirsutum HOM05D005863 ORTHO05D003355 4.3e-07 60.8 88 33.0
Gohir.D13G135600 Gossypium hirsutum HOM05D005863 ORTHO05D003355 4.3e-07 60.8 83 34.9
MBI14_g22553_MAGBIO Magnolia biondii HOM05D005863 ORTHO05D003355 4.3e-07 60.8 82 34.1
HPP92_027528 Vanilla planifolia HOM05D005863 ORTHO05D003355 4.3e-07 60.8 83 37.3
Gorai.013G152000 Gossypium raimondii HOM05D005863 ORTHO05D003355 9.5e-07 59.7 88 33.0
Actinidia37152 Actinidia chinensis HOM05D005863 ORTHO05D003355 1.2e-06 59.3 126 29.4
Carub.0001s4470 Capsella rubella HOM05D008497 ORTHO05D003355 1.2e-06 59.3 179 26.8
Thhalv10028078m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 1.2e-06 59.3 96 33.3
AL1G63810 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 2.1e-06 58.5 70 37.1
vmacro09646 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 4.7e-06 57.4 83 31.3
AT4G00580 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 6.1e-06 57.0 77 35.1
Lsat_1_v5_gn_7_114301 Lactuca sativa HOM05D005863 ORTHO05D003355 8.0e-06 56.6 127 28.3
Nn1g07525 Nelumbo nucifera HOM05D005863 ORTHO05D003355 8.0e-06 56.6 138 28.3
Oeu038657.1 Olea europaea HOM05D012928 ORTHO05D003355 8.0e-06 56.6 60 41.7
THA.LOC104808433 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 8.0e-06 56.6 71 33.8
THA.LOC104825537 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 8.0e-06 56.6 71 33.8


User provided reference genes

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