Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold124G33547 Striga asiatica HOM05D006290 ORTHO05D007734 4.7e-58 227.6 114 100.0
MSTRG.826 Avicennia marina HOM05D006290 ORTHO05D007734 4.1e-30 134.8 113 59.3
MSTRG.13517 Avicennia marina HOM05D006290 ORTHO05D007734 5.1e-28 127.9 115 56.5
Migut.L01076 Erythranthe guttata HOM05D006290 ORTHO05D007734 6.6e-28 127.5 114 62.3
Oeu033294.1 Olea europaea HOM05D006290 ORTHO05D007734 1.1e-27 126.7 123 57.7
Nitab4.5_0001914g0020 Nicotiana tabacum HOM05D006290 ORTHO05D007734 3.5e-21 105.1 92 55.4
Oeu020586.1 Olea europaea HOM05D006290 ORTHO05D007734 7.8e-21 104.0 75 69.3
Peaxi162Scf00004g01813 Petunia axillaris HOM05D006290 ORTHO05D007734 1.3e-20 103.2 90 56.7
Dinv21105 Davidia involucrata HOM05D001580 ORTHO05D001517 4.3e-19 98.2 89 56.2
Atru.chr11.1291 Acer truncatum HOM05D006290 ORTHO05D007734 7.3e-19 97.4 95 55.8
Hma1.2p1_3293F.1_g334960 Hydrangea macrophylla HOM05D006290 ORTHO05D007734 7.3e-19 97.4 115 47.0
DCAR_007237 Daucus carota HOM05D006290 ORTHO05D007734 2.8e-18 95.5 94 56.4
QL01p043858 Quercus lobata HOM05D006290 ORTHO05D007734 2.8e-18 95.5 120 47.5
Nitab4.5_0003285g0030 Nicotiana tabacum HOM05D006290 ORTHO05D007734 4.8e-18 94.7 110 46.4
Potri.010G126800 Populus trichocarpa HOM05D006290 ORTHO05D007734 8.1e-18 94.0 120 48.3
Sabra10G0096300 Salix brachista HOM05D006290 ORTHO05D007734 2.4e-17 92.4 118 49.2
vmacro10549 Vaccinium macrocarpon HOM05D006290 ORTHO05D007734 4.0e-17 91.7 67 67.2
Manes.14G100600 Manihot esculenta HOM05D006290 ORTHO05D007734 5.3e-17 91.3 95 54.7
CANSAT64G2445 Cannabis sativa HOM05D006290 ORTHO05D007734 6.9e-17 90.9 119 43.7
Cfa018610 Carpinus fangiana HOM05D006290 ORTHO05D007734 1.5e-16 89.7 119 47.1
DCAR_023668 Daucus carota HOM05D000325 ORTHO05D002981 7.6e-16 87.4 61 70.5
Haze_17464 Corylus avellana HOM05D006290 ORTHO05D007734 1.3e-15 86.7 119 45.4
GSVIVG01011914001 Vitis vinifera HOM05D006290 ORTHO05D007734 1.3e-15 86.7 115 43.5
Gorai.008G184100 Gossypium raimondii HOM05D006290 ORTHO05D007734 1.7e-15 86.3 72 55.6
TWI75G0318 Tripterygium wilfordii HOM05D006290 ORTHO05D007734 1.7e-15 86.3 88 55.7
Lj2g0005219 Lotus japonicus HOM05D006290 ORTHO05D007734 2.2e-15 85.9 95 46.3
Thecc.02G357300 Theobroma cacao HOM05D006290 ORTHO05D007734 2.9e-15 85.5 94 50.0
TWI79G1749 Tripterygium wilfordii HOM05D006290 ORTHO05D007734 2.9e-15 85.5 115 47.0
Duzib251G0521 Durio zibethinus HOM05D006290 ORTHO05D007734 3.8e-15 85.1 94 51.1
Glyma.01G082500 Glycine max HOM05D006290 ORTHO05D007734 4.9e-15 84.7 95 49.5
Potri.008G119300 Populus trichocarpa HOM05D006290 ORTHO05D007734 4.9e-15 84.7 106 48.1
CiPaw.15G083600 Carya illinoinensis HOM05D006290 ORTHO05D007734 6.4e-15 84.3 94 50.0
ECA234G1725 Erigeron canadensis HOM05D006290 ORTHO05D007734 6.4e-15 84.3 97 47.4
BraA02t06584Z Brassica rapa HOM05D006290 ORTHO05D007734 8.4e-15 84.0 84 48.8
Glyma.08G263700 Glycine max HOM05D006290 ORTHO05D007734 8.4e-15 84.0 95 50.5
BcaB05g24400 Brassica carinata HOM05D006290 ORTHO05D007734 1.1e-14 83.6 68 55.9
Actinidia16641 Actinidia chinensis HOM05D006290 ORTHO05D007734 1.4e-14 83.2 58 65.5
A02p15210 Brassica napus HOM05D006290 ORTHO05D007734 1.4e-14 83.2 84 48.8
A07p31920 Brassica napus HOM05D006290 ORTHO05D007734 1.4e-14 83.2 68 55.9
Aa31sc179G60 Aethionema arabicum HOM05D006290 ORTHO05D007734 1.9e-14 82.8 87 50.6
C06p37490 Brassica napus HOM05D006290 ORTHO05D007734 2.4e-14 82.4 61 60.7
BolC6t38851H Brassica oleracea HOM05D006290 ORTHO05D007734 2.4e-14 82.4 61 60.7
BraA07t30820Z Brassica rapa HOM05D006290 ORTHO05D007734 2.4e-14 82.4 61 60.7
Gohir.A12G168000 Gossypium hirsutum HOM05D006290 ORTHO05D007734 3.2e-14 82.0 72 55.6
HanXRQChr16g0529651 Helianthus annuus HOM05D006290 ORTHO05D007734 3.2e-14 82.0 76 55.3
THA.LOC104821947 Tarenaya hassleriana HOM05D006290 ORTHO05D007734 4.2e-14 81.6 113 46.9
C02p25020 Brassica napus HOM05D006290 ORTHO05D007734 5.4e-14 81.3 61 59.0
BolC2t08586H Brassica oleracea HOM05D006290 ORTHO05D007734 5.4e-14 81.3 61 59.0
CARHR061380 Cardamine hirsuta HOM05D006290 ORTHO05D007734 5.4e-14 81.3 84 51.2
Glyma.10G275300 Glycine max HOM05D006290 ORTHO05D007734 5.4e-14 81.3 87 50.6
Glyma.20G114400 Glycine max HOM05D006290 ORTHO05D007734 5.4e-14 81.3 87 51.7
Gohir.D12G171600 Gossypium hirsutum HOM05D006290 ORTHO05D007734 5.4e-14 81.3 72 55.6
Phvul.003G034800 Phaseolus vulgaris HOM05D006290 ORTHO05D007734 2.1e-13 79.3 99 50.5
AT1G68585 Arabidopsis thaliana HOM05D006290 ORTHO05D007734 2.7e-13 79.0 60 65.0
Lalb_Chr21g0309011 Lupinus albus HOM05D006290 ORTHO05D007734 2.7e-13 79.0 110 41.8
Medtr1g111150 Medicago truncatula HOM05D006290 ORTHO05D007734 2.7e-13 79.0 97 46.4
Rhsim09G0109500 Rhododendron simsii HOM05D006290 ORTHO05D007734 3.5e-13 78.6 59 61.0
TPR.G38332 Trifolium pratense HOM05D006290 ORTHO05D007734 3.5e-13 78.6 86 47.7
AL2G27490 Arabidopsis lyrata HOM05D006290 ORTHO05D007734 6.0e-13 77.8 60 63.3
BcaC08g45955 Brassica carinata HOM05D006290 ORTHO05D007734 6.0e-13 77.8 61 60.7
Eucgr.G02333 Eucalyptus grandis HOM05D006290 ORTHO05D007734 6.0e-13 77.8 101 42.6
MD13G1043600 Malus domestica HOM05D006290 ORTHO05D007734 6.0e-13 77.8 93 47.3
COL.COLO4_07905 Corchorus olitorius HOM05D001580 ORTHO05D001517 7.9e-13 77.4 103 45.6
Lj5g0001389 Lotus japonicus HOM05D006290 ORTHO05D007734 7.9e-13 77.4 68 54.4
Lalb_Chr17g0342051 Lupinus albus HOM05D006290 ORTHO05D007734 7.9e-13 77.4 102 41.2
BcaB03g15431 Brassica carinata HOM05D006290 ORTHO05D007734 1.0e-12 77.0 61 60.7
BcaC03g14971 Brassica carinata HOM05D006290 ORTHO05D007734 1.3e-12 76.6 61 59.0
Carub.0002s1512 Capsella rubella HOM05D006290 ORTHO05D007734 1.3e-12 76.6 60 63.3
Lsat_1_v5_gn_4_18480 Lactuca sativa HOM05D006290 ORTHO05D007734 1.3e-12 76.6 57 64.9
TPR.G26319 Trifolium pratense HOM05D006290 ORTHO05D007734 1.3e-12 76.6 106 40.6
Thhalv10019326m.g Eutrema salsugineum HOM05D006290 ORTHO05D007734 1.8e-12 76.3 61 59.0
Medtr5g055200 Medicago truncatula HOM05D006290 ORTHO05D007734 1.8e-12 76.3 94 45.7
arahy.Tifrunner.gnm1.ann1.89WS3K Arachis hypogaea HOM05D006290 ORTHO05D007734 3.0e-12 75.5 59 62.7
Phvul.007G026200 Phaseolus vulgaris HOM05D006290 ORTHO05D007734 3.0e-12 75.5 89 48.3
SalBow8G5082 Salvia bowleyana HOM05D006290 ORTHO05D007734 3.0e-12 75.5 75 54.7
Gohir.A13G054000 Gossypium hirsutum HOM05D006290 ORTHO05D007734 3.9e-12 75.1 67 55.2
Gohir.D13G071500 Gossypium hirsutum HOM05D006290 ORTHO05D007734 3.9e-12 75.1 67 55.2
Gorai.013G081900 Gossypium raimondii HOM05D006290 ORTHO05D007734 3.9e-12 75.1 67 55.2
SalBow8G3983 Salvia bowleyana HOM05D006290 ORTHO05D007734 3.9e-12 75.1 70 57.1
Solyc05g150121.1 Solanum lycopersicum HOM05D006290 ORTHO05D007734 5.1e-12 74.7 60 58.3
TAR371G1266 Trochodendron aralioides HOM05D006108 ORTHO05D007605 5.1e-12 74.7 71 56.3
arahy.Tifrunner.gnm1.ann1.N6V5UD Arachis hypogaea HOM05D006290 ORTHO05D007734 6.7e-12 74.3 59 61.0
Ca_11183_v3 Cicer arietinum L. HOM05D006290 ORTHO05D007734 6.7e-12 74.3 59 57.6
HanXRQChr15g0477181 Helianthus annuus HOM05D006290 ORTHO05D007734 6.7e-12 74.3 96 45.8
RcHm_v2.0_Chr4g0435471 Rosa chinensis HOM05D006108 ORTHO05D007605 8.7e-12 73.9 63 52.4
unitig_26.g10264 Utricularia gibba HOM05D000483 ORTHO05D000158 1.1e-11 73.6 67 58.2
FvH4_4g27620 Fragaria vesca HOM05D006290 ORTHO05D007734 1.5e-11 73.2 63 55.6
HanXRQChr17g0567961 Helianthus annuus HOM05D006290 ORTHO05D007734 1.5e-11 73.2 68 55.9
Dinv04481 Davidia involucrata HOM05D001580 ORTHO05D001517 1.9e-11 72.8 81 48.1
ECA246G4651 Erigeron canadensis HOM05D006290 ORTHO05D007734 2.5e-11 72.4 57 59.6
Nn4g23807 Nelumbo nucifera HOM05D006290 ORTHO05D007734 3.3e-11 72.0 58 56.9
Hund05756 Selenicereus undatus HOM05D006290 ORTHO05D007734 3.3e-11 72.0 90 38.9
HanXRQChr17g0552191 Helianthus annuus HOM05D006290 ORTHO05D007734 7.4e-11 70.9 58 56.9
Sc14g0007550 Simmondsia chinensis HOM05D006290 ORTHO05D007734 7.4e-11 70.9 93 40.9
Sp5g23690 Schrenkiella parvula HOM05D006290 ORTHO05D007734 9.6e-11 70.5 60 58.3
EL10Ac6g14437 Beta vulgaris HOM05D006290 ORTHO05D007734 1.6e-10 69.7 92 42.4
ClCG05G022830 Citrullus lanatus HOM05D006290 ORTHO05D007734 1.6e-10 69.7 88 43.2
Duzib268G1644 Durio zibethinus HOM05D006290 ORTHO05D007734 1.6e-10 69.7 72 51.4
Lalb_Chr10g0099941 Lupinus albus HOM05D006290 ORTHO05D007734 2.1e-10 69.3 70 51.4
Ciclev10033212m.g Citrus clementina HOM05D006290 ORTHO05D007734 2.8e-10 68.9 83 48.2
Psat6g229000 Pisum sativum HOM05D006290 ORTHO05D007734 2.8e-10 68.9 91 44.0
CsaV3_5G034200 Cucumis sativus L. HOM05D006290 ORTHO05D007734 4.8e-10 68.2 100 40.0
PGR119G1521 Punica granatum HOM05D006290 ORTHO05D007734 8.1e-10 67.4 68 51.5
Sed0010442 Sechium edule HOM05D006290 ORTHO05D007734 1.8e-09 66.2 58 55.2
FAN07G1587 Fragaria x ananassa HOM05D006108 ORTHO05D007605 3.1e-09 65.5 127 37.0
FAN22G0059 Fragaria x ananassa HOM05D006108 ORTHO05D007605 4.0e-09 65.1 127 37.0
Duzib248G0641 Durio zibethinus HOM05D006108 ORTHO05D007605 6.9e-09 64.3 55 56.4
Manes.06G069950 Manihot esculenta HOM05D006290 ORTHO05D007734 6.9e-09 64.3 83 45.8
Aqoxy3G00325 Aquilegia oxysepala HOM05D006290 ORTHO05D007734 5.8e-08 61.2 85 38.8
FAN12G1280 Fragaria x ananassa HOM05D006290 ORTHO05D007734 7.6e-08 60.8 87 39.1
AUR62002889 Chenopodium quinoa HOM05D006290 ORTHO05D007734 1.3e-07 60.1 58 50.0
Actinidia14876 Actinidia chinensis HOM05D006290 ORTHO05D007734 2.9e-07 58.9 66 51.5
Solyc12g150113.1 Solanum lycopersicum HOM05D006290 ORTHO05D007734 2.9e-07 58.9 81 37.0
Sopen12g017530 Solanum pennellii HOM05D006290 ORTHO05D007734 2.9e-07 58.9 81 37.0
GSVIVG01008271001 Vitis vinifera HOM05D006108 ORTHO05D007605 3.8e-07 58.5 56 50.0
Peaxi162Scf00634g00115 Petunia axillaris HOM05D006290 ORTHO05D007734 4.9e-07 58.2 81 42.0
PGSC0003DMG400021769 Solanum tuberosum HOM05D006290 ORTHO05D007734 4.9e-07 58.2 81 37.0
C06p41250 Brassica napus HOM05D006290 ORTHO05D007734 1.1e-06 57.0 48 56.2
VMungo0720G2407 Vigna mungo HOM05D006290 ORTHO05D007734 1.4e-06 56.6 41 61.0
MELO3C012234.2 Cucumis melo HOM05D006290 ORTHO05D007734 1.9e-06 56.2 42 57.1
CiPaw.16G064000 Carya illinoinensis HOM05D006290 ORTHO05D007734 2.4e-06 55.8 62 45.2
MBI12_g30235_MAGBIO Magnolia biondii HOM05D006290 ORTHO05D007734 2.4e-06 55.8 58 44.8
CAN.G257.59 Capsicum annuum HOM05D006290 ORTHO05D007734 7.1e-06 54.3 82 37.8
MD06G1215000 Malus domestica HOM05D006290 ORTHO05D007734 9.3e-06 53.9 83 36.1


User provided reference genes

Program Settings