Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold123G33426 Striga asiatica HOM05D006739 ORTHO05D008402 3.3e-73 280.4 623 100.0
Migut.N00013 Erythranthe guttata HOM05D006739 ORTHO05D008402 9.9e-25 119.4 145 51.7
MSTRG.24837 Avicennia marina HOM05D006739 ORTHO05D008402 1.7e-21 108.6 143 49.0
Nitab4.5_0002667g0050 Nicotiana tabacum HOM05D006739 ORTHO05D008402 1.8e-18 98.6 135 47.4
Nitab4.5_0002667g0060 Nicotiana tabacum HOM05D006739 ORTHO05D008402 1.8e-18 98.6 135 47.4
SalBow5G4649 Salvia bowleyana HOM05D006739 ORTHO05D008402 1.8e-18 98.6 126 50.0
Peaxi162Scf01212g00003 Petunia axillaris HOM05D006739 ORTHO05D008402 4.4e-17 94.0 133 45.1
Sopen06g003030 Solanum pennellii HOM05D006739 ORTHO05D008402 2.1e-14 85.1 167 35.9
PGSC0003DMG400014713 Solanum tuberosum HOM05D006739 ORTHO05D008402 2.7e-14 84.7 170 37.1
PGSC0003DMG400027357 Solanum tuberosum HOM05D006739 ORTHO05D008402 2.7e-14 84.7 170 37.1
CSS0033703 Camellia sinensis var. sinensis HOM05D006739 ORTHO05D008402 2.3e-13 81.6 166 37.3
CSS0036090 Camellia sinensis var. sinensis HOM05D006739 ORTHO05D008402 2.3e-13 81.6 166 37.3
Dinv44882 Davidia involucrata HOM05D006739 ORTHO05D008402 2.3e-13 81.6 161 35.4
Ah.05g171720 Amaranthus hybridus HOM05D006739 ORTHO05D008402 3.0e-13 81.3 170 34.7
HanXRQChr11g0324241 Helianthus annuus HOM05D006739 ORTHO05D008402 1.9e-12 78.6 127 37.8
Atru.chr13.953 Acer truncatum HOM05D006739 ORTHO05D008402 3.3e-12 77.8 158 35.4
Actinidia19611 Actinidia chinensis HOM05D006739 ORTHO05D008402 3.3e-12 77.8 106 47.2
EL10Ac1g00466 Beta vulgaris HOM05D006739 ORTHO05D008402 3.3e-12 77.8 46 76.1
MBI16_g36544_MAGBIO Magnolia biondii HOM05D006739 ORTHO05D008402 4.3e-12 77.4 94 50.0
MD15G1390100 Malus domestica HOM05D006739 ORTHO05D008402 9.6e-12 76.3 157 36.3
TWI56G0071 Tripterygium wilfordii HOM05D006739 ORTHO05D008402 1.2e-11 75.9 163 35.0
AUR62019126 Chenopodium quinoa HOM05D006739 ORTHO05D008402 1.6e-11 75.5 43 76.7
Ciclev10000605m.g Citrus clementina HOM05D006739 ORTHO05D008402 1.6e-11 75.5 43 76.7
TAR628G0153 Trochodendron aralioides HOM05D006739 ORTHO05D008402 1.6e-11 75.5 50 66.0
AUR62014385 Chenopodium quinoa HOM05D006739 ORTHO05D008402 2.1e-11 75.1 43 76.7
Oeu020282.1 Olea europaea HOM05D006739 ORTHO05D008402 2.1e-11 75.1 43 76.7
PSO761G0270 Papaver somniferum HOM05D006739 ORTHO05D008402 2.1e-11 75.1 139 36.0
Lsat_1_v5_gn_1_781 Lactuca sativa HOM05D006739 ORTHO05D008402 2.8e-11 74.7 43 74.4
MD08G1206600 Malus domestica HOM05D006739 ORTHO05D008402 2.8e-11 74.7 160 36.2
Hma1.2p1_0010F.1_g006410 Hydrangea macrophylla HOM05D006739 ORTHO05D008402 4.7e-11 73.9 105 44.8
ECA247G1663 Erigeron canadensis HOM05D006739 ORTHO05D008402 8.1e-11 73.2 138 36.2
Haze_22495 Corylus avellana HOM05D006739 ORTHO05D008402 1.4e-10 72.4 96 45.8
QL12p039876 Quercus lobata HOM05D006739 ORTHO05D008402 2.4e-10 71.6 43 72.1
Sc15g0003370 Simmondsia chinensis HOM05D006739 ORTHO05D008402 2.4e-10 71.6 43 74.4
PSO700G0042 Papaver somniferum HOM05D006739 ORTHO05D008402 5.2e-10 70.5 43 69.8
RcHm_v2.0_Chr7g0233521 Rosa chinensis HOM05D006739 ORTHO05D008402 6.9e-10 70.1 151 35.8
Manes.05G187600 Manihot esculenta HOM05D006739 ORTHO05D008402 9.0e-10 69.7 144 34.7
THA.LOC104816789 Tarenaya hassleriana HOM05D006739 ORTHO05D008402 9.0e-10 69.7 141 34.8
Cfa013823 Carpinus fangiana HOM05D006739 ORTHO05D008402 1.2e-09 69.3 93 44.1
FAN08G0673 Fragaria x ananassa HOM05D006739 ORTHO05D008402 1.2e-09 69.3 89 47.2
Lj1g0027306 Lotus japonicus HOM05D006739 ORTHO05D008402 1.2e-09 69.3 155 35.5
Sed0004950 Sechium edule HOM05D006739 ORTHO05D008402 1.2e-09 69.3 46 69.6
ClCG08G011830 Citrullus lanatus HOM05D006739 ORTHO05D008402 1.5e-09 68.9 43 72.1
Potri.002G109500 Populus trichocarpa HOM05D006739 ORTHO05D008402 1.5e-09 68.9 137 35.0
Eucgr.F02164 Eucalyptus grandis HOM05D006739 ORTHO05D008402 2.0e-09 68.6 46 67.4
CARHR009960 Cardamine hirsuta HOM05D006739 ORTHO05D008402 2.6e-09 68.2 143 31.5
Prupe.1G539000 Prunus persica HOM05D006739 ORTHO05D008402 2.6e-09 68.2 157 32.5
Thecc.08G075400 Theobroma cacao HOM05D006739 ORTHO05D008402 2.6e-09 68.2 152 34.9
Gorai.010G032500 Gossypium raimondii HOM05D006739 ORTHO05D008402 3.4e-09 67.8 140 36.4
TAR152G0001 Trochodendron aralioides HOM05D006739 ORTHO05D008402 3.4e-09 67.8 168 31.0
DCAR_019326 Daucus carota HOM05D006739 ORTHO05D008402 4.4e-09 67.4 43 69.8
AT1G09900 Arabidopsis thaliana HOM05D006739 ORTHO05D008402 5.8e-09 67.0 143 31.5
Sabra02G0086200 Salix brachista HOM05D006739 ORTHO05D008402 5.8e-09 67.0 137 35.0
Aa31LG1G4990 Aethionema arabicum HOM05D006739 ORTHO05D008402 7.6e-09 66.6 140 32.9
CAN.G941.26 Capsicum annuum HOM05D006739 ORTHO05D008402 7.6e-09 66.6 37 78.4
FvH4_5g34030 Fragaria vesca HOM05D006739 ORTHO05D008402 7.6e-09 66.6 151 35.8
FAN18G3137 Fragaria x ananassa HOM05D006739 ORTHO05D008402 7.6e-09 66.6 151 35.8
Gohir.A06G030375 Gossypium hirsutum HOM05D006739 ORTHO05D008402 7.6e-09 66.6 140 35.7
Gohir.D06G029600 Gossypium hirsutum HOM05D006739 ORTHO05D008402 7.6e-09 66.6 96 44.8
Aqoxy5G01872 Aquilegia oxysepala HOM05D006739 ORTHO05D008402 9.9e-09 66.2 147 32.7
Sp1g08530 Schrenkiella parvula HOM05D006739 ORTHO05D008402 9.9e-09 66.2 144 31.9
CiPaw.08G057600 Carya illinoinensis HOM05D006739 ORTHO05D008402 1.3e-08 65.9 43 65.1
Rhsim07G0214200 Rhododendron simsii HOM05D006739 ORTHO05D008402 2.2e-08 65.1 150 36.0
AL1G20500 Arabidopsis lyrata HOM05D006739 ORTHO05D008402 2.9e-08 64.7 145 32.4
A06p06610 Brassica napus HOM05D006739 ORTHO05D008402 2.9e-08 64.7 134 31.3
ATR0800G015 Amborella trichopoda HOM05D006739 ORTHO05D008402 3.8e-08 64.3 43 67.4
Carub.0001s0928 Capsella rubella HOM05D006739 ORTHO05D008402 3.8e-08 64.3 145 29.7
Hund26833 Selenicereus undatus HOM05D006739 ORTHO05D008402 3.8e-08 64.3 43 72.1
COL.COLO4_35303 Corchorus olitorius HOM05D006739 ORTHO05D008402 4.9e-08 63.9 150 34.7
MELO3C011106.2 Cucumis melo HOM05D006739 ORTHO05D008402 4.9e-08 63.9 40 72.5
BraA06t23875Z Brassica rapa HOM05D006739 ORTHO05D008402 8.4e-08 63.2 134 31.3
CANSAT25G1844 Cannabis sativa HOM05D006739 ORTHO05D008402 8.4e-08 63.2 80 47.5
Phvul.009G145100 Phaseolus vulgaris HOM05D006739 ORTHO05D008402 8.4e-08 63.2 113 36.3
vmacro04630 Vaccinium macrocarpon HOM05D006739 ORTHO05D008402 8.4e-08 63.2 146 34.2
Ca_15539_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 1.1e-07 62.8 135 33.3
BcaC05g24834 Brassica carinata HOM05D006739 ORTHO05D008402 1.9e-07 62.0 42 61.9
CsaV3_2G030450 Cucumis sativus L. HOM05D006739 ORTHO05D008402 1.9e-07 62.0 39 71.8
C05p08020 Brassica napus HOM05D006739 ORTHO05D008402 2.4e-07 61.6 42 61.9
BolC5t29554H Brassica oleracea HOM05D006739 ORTHO05D008402 2.4e-07 61.6 42 61.9
Hund26853 Selenicereus undatus HOM05D006739 ORTHO05D008402 2.4e-07 61.6 43 67.4
Duzib093G0111 Durio zibethinus HOM05D006739 ORTHO05D008402 3.2e-07 61.2 153 33.3
Glyma.04G090900 Glycine max HOM05D006739 ORTHO05D008402 3.2e-07 61.2 43 62.8
Glyma.06G092600 Glycine max HOM05D006739 ORTHO05D008402 3.2e-07 61.2 43 62.8
VMungo1309G0048 Vigna mungo HOM05D006739 ORTHO05D008402 3.2e-07 61.2 148 34.5
PGR042G0142 Punica granatum HOM05D006739 ORTHO05D008402 4.2e-07 60.8 39 71.8
CDE04G0064 Ceratophyllum demersum HOM05D006739 ORTHO05D008402 1.2e-06 59.3 49 57.1
CDE06G1140 Ceratophyllum demersum HOM05D002753 ORTHO05D003097 1.2e-06 59.3 43 62.8
CDE07G2071 Ceratophyllum demersum HOM05D006739 ORTHO05D008402 1.6e-06 58.9 127 32.3
Duzib116G0618 Durio zibethinus HOM05D006739 ORTHO05D008402 3.5e-06 57.8 99 38.4
Hund26842 Selenicereus undatus HOM05D006739 ORTHO05D008402 6.0e-06 57.0 73 49.3


User provided reference genes

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