Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold123G33404 Striga asiatica HOM05D002451 ORTHO05D005601 9.1e-53 209.9 102 100.0
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 9.1e-29 130.2 80 80.0
Ciclev10024743m.g Citrus clementina HOM05D002451 ORTHO05D005601 2.8e-17 92.0 92 50.0
Migut.I00897 Erythranthe guttata HOM05D002451 ORTHO05D005601 4.7e-17 91.3 79 54.4
COL.COLO4_30513 Corchorus olitorius HOM05D002451 ORTHO05D005601 1.8e-16 89.4 92 47.8
ECA232G2699 Erigeron canadensis HOM05D002451 ORTHO05D005601 1.8e-16 89.4 73 47.9
vmacro18852 Vaccinium macrocarpon HOM05D002451 ORTHO05D005601 2.3e-16 89.0 79 51.9
arahy.Tifrunner.gnm1.ann1.T566S8 Arachis hypogaea HOM05D002451 ORTHO05D005601 3.0e-16 88.6 80 48.8
MELO3C024437.2 Cucumis melo HOM05D002451 ORTHO05D005601 4.0e-16 88.2 92 46.7
CsaV3_7G035270 Cucumis sativus L. HOM05D002451 ORTHO05D005601 5.2e-16 87.8 92 46.7
Dinv37977 Davidia involucrata HOM05D002451 ORTHO05D005601 5.2e-16 87.8 92 48.9
Gohir.A06G189400 Gossypium hirsutum HOM05D002451 ORTHO05D005601 6.8e-16 87.4 92 48.9
CiPaw.01G231400 Carya illinoinensis HOM05D002451 ORTHO05D005601 8.9e-16 87.0 92 46.7
Gohir.D06G197800 Gossypium hirsutum HOM05D002451 ORTHO05D005601 8.9e-16 87.0 73 52.1
ClCG09G000220 Citrullus lanatus HOM05D002451 ORTHO05D005601 1.2e-15 86.7 92 46.7
Nn8g39071 Nelumbo nucifera HOM05D002451 ORTHO05D005601 1.2e-15 86.7 73 52.1
arahy.Tifrunner.gnm1.ann1.65X03I Arachis hypogaea HOM05D002451 ORTHO05D005601 1.5e-15 86.3 80 46.2
Cpa.g.sc25.4 Carica papaya HOM05D002451 ORTHO05D005601 1.5e-15 86.3 76 51.3
PGR102G3176 Punica granatum HOM05D002451 ORTHO05D005601 1.5e-15 86.3 94 46.8
Atru.chr1.3524 Acer truncatum HOM05D002451 ORTHO05D005601 2.0e-15 85.9 92 45.7
CSS0044368 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 2.0e-15 85.9 85 42.4
HanXRQChr09g0276251 Helianthus annuus HOM05D002451 ORTHO05D005601 2.0e-15 85.9 73 46.6
Manes.11G033500 Manihot esculenta HOM05D002451 ORTHO05D005601 2.0e-15 85.9 92 50.0
Nitab4.5_0006467g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 2.0e-15 85.9 79 50.6
Sc10g0007590 Simmondsia chinensis HOM05D002451 ORTHO05D005601 2.0e-15 85.9 72 51.4
Gorai.010G230600 Gossypium raimondii HOM05D002451 ORTHO05D005601 2.6e-15 85.5 73 50.7
QL05p020031 Quercus lobata HOM05D002451 ORTHO05D005601 2.6e-15 85.5 73 49.3
Rhsim08G0227600 Rhododendron simsii HOM05D002451 ORTHO05D005601 2.6e-15 85.5 79 48.1
Solyc03g121030.2 Solanum lycopersicum HOM05D002451 ORTHO05D005601 2.6e-15 85.5 79 49.4
MSTRG.11027 Avicennia marina HOM05D002451 ORTHO05D005601 3.4e-15 85.1 92 48.9
Sopen03g039860 Solanum pennellii HOM05D002451 ORTHO05D005601 3.4e-15 85.1 79 48.1
unitig_88.g27601 Utricularia gibba HOM05D002451 ORTHO05D005601 3.4e-15 85.1 79 51.9
MBI04_g20307_MAGBIO Magnolia biondii HOM05D002451 ORTHO05D005601 5.8e-15 84.3 92 46.7
Oeu017119.1 Olea europaea HOM05D002451 ORTHO05D005601 5.8e-15 84.3 79 49.4
Sed0021872 Sechium edule HOM05D002451 ORTHO05D005601 5.8e-15 84.3 92 44.6
GSVIVG01016980001 Vitis vinifera HOM05D002451 ORTHO05D005601 5.8e-15 84.3 92 42.4
Lj9C513G3 Lonicera japonica HOM05D002451 ORTHO05D005601 7.5e-15 84.0 92 46.7
Thecc.06G100100 Theobroma cacao HOM05D002451 ORTHO05D005601 7.5e-15 84.0 92 48.9
Duzib192G0210 Durio zibethinus HOM05D002451 ORTHO05D005601 9.8e-15 83.6 92 46.7
Glyma.15G019600 Glycine max HOM05D002451 ORTHO05D005601 9.8e-15 83.6 73 47.9
Cc04_g02550 Coffea canephora HOM05D002451 ORTHO05D005601 1.3e-14 83.2 72 50.0
Actinidia32098 Actinidia chinensis HOM05D002451 ORTHO05D005601 2.9e-14 82.0 92 46.7
Nitab4.5_0006902g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 2.9e-14 82.0 79 49.4
Cfa003647 Carpinus fangiana HOM05D002451 ORTHO05D005601 3.7e-14 81.6 73 49.3
EL10Ac9g21204 Beta vulgaris HOM05D002451 ORTHO05D005601 4.9e-14 81.3 79 44.3
Haze_15848 Corylus avellana HOM05D002451 ORTHO05D005601 4.9e-14 81.3 73 47.9
Glyma.13G354600 Glycine max HOM05D002451 ORTHO05D005601 8.3e-14 80.5 74 48.6
Hund07601 Selenicereus undatus HOM05D002451 ORTHO05D005601 1.1e-13 80.1 77 46.8
THA.LOC104809828 Tarenaya hassleriana HOM05D002451 ORTHO05D005601 1.1e-13 80.1 76 47.4
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 1.1e-13 80.1 92 44.6
Medtr2g100870 Medicago truncatula HOM05D002451 ORTHO05D005601 1.4e-13 79.7 79 45.6
PSO063G3373 Papaver somniferum HOM05D002451 ORTHO05D005601 1.8e-13 79.3 92 43.5
Lalb_Chr14g0373021 Lupinus albus HOM05D002451 ORTHO05D005601 2.4e-13 79.0 73 47.9
AUR62022206 Chenopodium quinoa HOM05D002451 ORTHO05D005601 3.2e-13 78.6 89 44.9
Medtr5g085950 Medicago truncatula HOM05D002451 ORTHO05D005601 3.2e-13 78.6 79 41.8
PSO832G2466 Papaver somniferum HOM05D002451 ORTHO05D005601 3.2e-13 78.6 92 43.5
Phvul.005G166100 Phaseolus vulgaris HOM05D002451 ORTHO05D005601 3.2e-13 78.6 92 42.4
Sp2g18530 Schrenkiella parvula HOM05D002451 ORTHO05D005601 3.2e-13 78.6 92 40.2
Eucgr.F03079 Eucalyptus grandis HOM05D002451 ORTHO05D005601 4.1e-13 78.2 78 46.2
ATR0705G185 Amborella trichopoda HOM05D002451 ORTHO05D005601 5.4e-13 77.8 76 44.7
CDE05G2530 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 5.4e-13 77.8 93 43.0
AUR62031915 Chenopodium quinoa HOM05D002451 ORTHO05D005601 5.4e-13 77.8 92 43.5
TWI12G0408 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 5.4e-13 77.8 80 43.8
Potri.003G048800 Populus trichocarpa HOM05D002451 ORTHO05D005601 9.2e-13 77.0 92 44.6
Zm00001eb301230 Zea mays HOM05D002451 ORTHO05D005601 9.2e-13 77.0 76 44.7
Prupe.3G059000 Prunus persica HOM05D002451 ORTHO05D005601 1.2e-12 76.6 92 43.5
TPR.G6596 Trifolium pratense HOM05D002451 ORTHO05D005601 1.6e-12 76.3 79 39.2
TWI75G1452 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 1.6e-12 76.3 92 41.3
A02p37220 Brassica napus HOM05D002451 ORTHO05D005601 2.0e-12 75.9 92 40.2
Ca_01165_v3 Cicer arietinum L. HOM05D002451 ORTHO05D005601 2.0e-12 75.9 79 43.0
FAN02G1073 Fragaria x ananassa HOM05D002451 ORTHO05D005601 2.0e-12 75.9 92 43.5
FAN05G4332 Fragaria x ananassa HOM05D002451 ORTHO05D005601 2.0e-12 75.9 92 43.5
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 2.0e-12 75.9 92 43.5
Aa31LG9G10330 Aethionema arabicum HOM05D002451 ORTHO05D005601 2.7e-12 75.5 93 41.9
C02p56250 Brassica napus HOM05D002451 ORTHO05D005601 2.7e-12 75.5 92 40.2
CANSAT56G2471 Cannabis sativa HOM05D002451 ORTHO05D005601 2.7e-12 75.5 72 44.4
FvH4_6g32400 Fragaria vesca HOM05D002451 ORTHO05D005601 2.7e-12 75.5 92 42.4
FAN14G4820 Fragaria x ananassa HOM05D002451 ORTHO05D005601 2.7e-12 75.5 92 42.4
BcaC03g17628 Brassica carinata HOM05D002451 ORTHO05D005601 3.5e-12 75.1 92 39.1
BolC2t11683H Brassica oleracea HOM05D002451 ORTHO05D005601 3.5e-12 75.1 92 39.1
Carub.0008s0769 Capsella rubella HOM05D002451 ORTHO05D005601 3.5e-12 75.1 79 40.5
RcHm_v2.0_Chr2g0140541 Rosa chinensis HOM05D002451 ORTHO05D005601 3.5e-12 75.1 92 43.5
AT5G48120 Arabidopsis thaliana HOM05D002451 ORTHO05D005601 4.6e-12 74.7 79 40.5
Thhalv10003552m.g Eutrema salsugineum HOM05D002451 ORTHO05D005601 4.6e-12 74.7 92 41.3
Aa31LG11G5160 Aethionema arabicum HOM05D002451 ORTHO05D005601 6.0e-12 74.3 93 41.9
BraA02t08709Z Brassica rapa HOM05D002451 ORTHO05D005601 6.0e-12 74.3 92 39.1
Lsat_1_v5_gn_4_97440 Lactuca sativa HOM05D002451 ORTHO05D005601 7.8e-12 73.9 92 40.2
HPP92_007690 Vanilla planifolia HOM05D002451 ORTHO05D005601 1.3e-11 73.2 93 39.8
Psat5g295800 Pisum sativum HOM05D002451 ORTHO05D005601 1.7e-11 72.8 73 45.2
AL8G20730 Arabidopsis lyrata HOM05D002451 ORTHO05D005601 2.3e-11 72.4 79 38.0
BcaB07g30001 Brassica carinata HOM05D002451 ORTHO05D005601 2.3e-11 72.4 92 38.0
Aqoxy7G01406 Aquilegia oxysepala HOM05D002451 ORTHO05D005601 3.9e-11 71.6 92 38.0
MD09G1202800 Malus domestica HOM05D002451 ORTHO05D005601 3.9e-11 71.6 92 39.1
Os07g0177100 Oryza sativa ssp. japonica HOM05D002451 ORTHO05D005601 3.9e-11 71.6 76 43.4
SEGI_26537 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 3.9e-11 71.6 80 40.0
CARHR259290 Cardamine hirsuta HOM05D002451 ORTHO05D005601 8.6e-11 70.5 92 41.3
QL05p020001 Quercus lobata HOM05D002451 ORTHO05D005601 1.1e-10 70.1 72 51.4
Lj1g0009957 Lotus japonicus HOM05D002451 ORTHO05D005601 1.9e-10 69.3 79 41.8
SHI11089 Sapria himalayana HOM05D002451 ORTHO05D005601 1.6e-09 66.2 73 38.4
Ah.01g022090 Amaranthus hybridus HOM05D002451 ORTHO05D005601 4.7e-09 64.7 72 47.2
Pp3c9_4950 Physcomitrium patens HOM05D002451 ORTHO05D005601 2.0e-07 59.3 72 37.5
Sabra03G0029300 Salix brachista HOM05D002451 ORTHO05D005601 2.6e-07 58.9 58 48.3


User provided reference genes

Program Settings